Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p081438 Quercus lobata HOM05D005373 ORTHO05D006617 5.4e-53 210.7 103 100.0
QL12p042863 Quercus lobata HOM05D005373 ORTHO05D006617 1.2e-52 209.5 103 99.0
Cfa002338 Carpinus fangiana HOM05D005373 ORTHO05D006617 1.1e-50 203.0 103 94.2
CiPaw.02G033000 Carya illinoinensis HOM05D005373 ORTHO05D006617 4.3e-50 201.1 103 94.2
CiPaw.04G182700 Carya illinoinensis HOM05D005373 ORTHO05D006617 4.3e-50 201.1 103 94.2
EL10Ac1g00710 Beta vulgaris HOM05D005373 ORTHO05D006617 7.3e-50 200.3 103 92.2
FvH4_2g22310 Fragaria vesca HOM05D005373 ORTHO05D006617 1.2e-49 199.5 103 91.3
FAN20G0018 Fragaria x ananassa HOM05D005373 ORTHO05D006617 1.2e-49 199.5 103 91.3
FAN24G2777 Fragaria x ananassa HOM05D005373 ORTHO05D006617 1.2e-49 199.5 103 91.3
Prupe.8G230800 Prunus persica HOM05D005373 ORTHO05D006617 1.2e-49 199.5 103 91.3
TAR365G0879 Trochodendron aralioides HOM05D005373 ORTHO05D006617 1.2e-49 199.5 103 92.2
arahy.Tifrunner.gnm1.ann1.W8F73Z Arachis hypogaea HOM05D005373 ORTHO05D006617 2.1e-49 198.7 103 91.3
Manes.01G200900 Manihot esculenta HOM05D005373 ORTHO05D006617 2.1e-49 198.7 103 92.2
Dinv22468 Davidia involucrata HOM05D005373 ORTHO05D006617 2.8e-49 198.4 103 91.3
MD05G1204500 Malus domestica HOM05D005373 ORTHO05D006617 2.8e-49 198.4 103 91.3
MD10G1191500 Malus domestica HOM05D005373 ORTHO05D006617 2.8e-49 198.4 103 91.3
RcHm_v2.0_Chr6g0289311 Rosa chinensis HOM05D005373 ORTHO05D006617 2.8e-49 198.4 103 91.3
Sed0003924 Sechium edule HOM05D005373 ORTHO05D006617 2.8e-49 198.4 103 90.3
Sc02g0003290 Simmondsia chinensis HOM05D005373 ORTHO05D006617 3.6e-49 198.0 103 91.3
Actinidia24948 Actinidia chinensis HOM05D005373 ORTHO05D006617 4.7e-49 197.6 103 90.3
CSS0017854 Camellia sinensis var. sinensis HOM05D005373 ORTHO05D006617 4.7e-49 197.6 103 91.3
GSVIVG01000751001 Vitis vinifera HOM05D005373 ORTHO05D006617 1.0e-48 196.4 103 90.3
CANSAT01G0877 Cannabis sativa HOM05D005373 ORTHO05D006617 1.4e-48 196.1 103 89.3
FAN15G3255 Fragaria x ananassa HOM05D005373 ORTHO05D006617 1.4e-48 196.1 103 90.3
Actinidia21168 Actinidia chinensis HOM05D005373 ORTHO05D006617 1.8e-48 195.7 103 90.3
MELO3C014306.2 Cucumis melo HOM05D005373 ORTHO05D006617 1.8e-48 195.7 103 89.3
CsaV3_2G013670 Cucumis sativus L. HOM05D005373 ORTHO05D006617 1.8e-48 195.7 103 89.3
TPR.G35732 Trifolium pratense HOM05D005373 ORTHO05D006617 1.8e-48 195.7 103 89.3
Medtr1g070460 Medicago truncatula HOM05D005373 ORTHO05D006617 2.3e-48 195.3 103 89.3
Rhsim12G0063100 Rhododendron simsii HOM05D005373 ORTHO05D006617 2.3e-48 195.3 103 88.3
Rhsim01G0268500 Rhododendron simsii HOM05D005373 ORTHO05D006617 3.1e-48 194.9 103 87.4
Cpa.g.sc52.142 Carica papaya HOM05D005373 ORTHO05D006617 4.0e-48 194.5 103 88.3
AUR62013793 Chenopodium quinoa HOM05D005373 ORTHO05D006617 4.0e-48 194.5 103 88.3
PSO832G1599 Papaver somniferum HOM05D005373 ORTHO05D006617 4.0e-48 194.5 103 88.3
TAR633G1352 Trochodendron aralioides HOM05D005373 ORTHO05D006617 4.0e-48 194.5 103 88.3
Potri.002G043600 Populus trichocarpa HOM05D005373 ORTHO05D006617 6.8e-48 193.7 103 89.3
PGR102G1093 Punica granatum HOM05D005373 ORTHO05D006617 6.8e-48 193.7 103 88.3
CARHR157930 Cardamine hirsuta HOM05D005373 ORTHO05D006617 8.9e-48 193.4 103 88.3
ClCG07G000650 Citrullus lanatus HOM05D005373 ORTHO05D006617 8.9e-48 193.4 103 87.4
Duzib211G0177 Durio zibethinus HOM05D005373 ORTHO05D006617 8.9e-48 193.4 103 87.4
AT3G49100 Arabidopsis thaliana HOM05D005373 ORTHO05D006617 1.2e-47 193.0 103 87.4
Carub.0005s1529 Capsella rubella HOM05D005373 ORTHO05D006617 1.2e-47 193.0 103 87.4
AUR62023362 Chenopodium quinoa HOM05D005373 ORTHO05D006617 1.2e-47 193.0 103 87.4
THA.LOC104821383 Tarenaya hassleriana HOM05D005373 ORTHO05D006617 1.2e-47 193.0 103 88.3
ATR0665G560 Amborella trichopoda HOM05D005373 ORTHO05D006617 2.0e-47 192.2 103 89.3
AL5G28610 Arabidopsis lyrata HOM05D005373 ORTHO05D006617 2.0e-47 192.2 103 86.4
CSS0009352 Camellia sinensis var. sinensis HOM05D005373 ORTHO05D006617 2.0e-47 192.2 103 88.3
CANSAT11G1068 Cannabis sativa HOM05D005373 ORTHO05D006617 2.0e-47 192.2 103 87.4
Hund17126 Selenicereus undatus HOM05D005373 ORTHO05D006617 2.0e-47 192.2 103 88.3
TPR.G2468 Trifolium pratense HOM05D005373 ORTHO05D006617 2.0e-47 192.2 103 86.4
Psat4g197520 Pisum sativum HOM05D005373 ORTHO05D006617 2.6e-47 191.8 103 86.4
Sp5g12980 Schrenkiella parvula HOM05D005373 ORTHO05D006617 2.6e-47 191.8 103 87.4
Atru.chr5.1594 Acer truncatum HOM05D005373 ORTHO05D006617 3.4e-47 191.4 103 86.4
COL.COLO4_08280 Corchorus olitorius HOM05D005373 ORTHO05D006617 3.4e-47 191.4 103 86.4
COL.COLO4_29457 Corchorus olitorius HOM05D005373 ORTHO05D006617 3.4e-47 191.4 103 86.4
Glyma.02G141101 Glycine max HOM05D005373 ORTHO05D006617 3.4e-47 191.4 103 88.3
Nn1g02594 Nelumbo nucifera HOM05D005373 ORTHO05D006617 3.4e-47 191.4 103 86.4
THA.LOC104818165 Tarenaya hassleriana HOM05D005373 ORTHO05D006617 3.4e-47 191.4 103 86.4
Thecc.01G266100 Theobroma cacao HOM05D005373 ORTHO05D006617 3.4e-47 191.4 103 85.4
Cc01_g18740 Coffea canephora HOM05D005373 ORTHO05D006617 4.4e-47 191.0 103 85.4
Lj5g0027817 Lotus japonicus HOM05D005373 ORTHO05D006617 4.4e-47 191.0 103 85.4
MBI04_g39243_MAGBIO Magnolia biondii HOM05D005373 ORTHO05D006617 4.4e-47 191.0 103 87.4
Gohir.A08G188600 Gossypium hirsutum HOM05D005373 ORTHO05D006617 5.8e-47 190.7 103 85.4
Gohir.D08G207000 Gossypium hirsutum HOM05D005373 ORTHO05D006617 5.8e-47 190.7 103 85.4
Gorai.004G219200 Gossypium raimondii HOM05D005373 ORTHO05D006617 5.8e-47 190.7 103 85.4
Oeu002282.1 Olea europaea HOM05D001069 ORTHO05D001549 5.8e-47 190.7 103 85.4
Dinv34577 Davidia involucrata HOM05D005373 ORTHO05D006617 7.5e-47 190.3 103 87.4
Thhalv10010849m.g Eutrema salsugineum HOM05D005373 ORTHO05D006617 7.5e-47 190.3 103 86.4
Glyma.08G346000 Glycine max HOM05D005373 ORTHO05D006617 7.5e-47 190.3 103 84.5
Aqoxy2G03557 Aquilegia oxysepala HOM05D005373 ORTHO05D006617 9.8e-47 189.9 103 86.4
Eucgr.B01502 Eucalyptus grandis HOM05D005373 ORTHO05D006617 9.8e-47 189.9 103 87.4
Glyma.10G032800 Glycine max HOM05D005373 ORTHO05D006617 9.8e-47 189.9 103 86.4
Potri.005G219400 Populus trichocarpa HOM05D005373 ORTHO05D006617 1.3e-46 189.5 103 86.4
Lalb_Chr19g0125981 Lupinus albus HOM05D005373 ORTHO05D006617 1.7e-46 189.1 103 83.5
Aa31LG4G17560 Aethionema arabicum HOM05D005373 ORTHO05D006617 2.2e-46 188.7 104 87.5
Glyma.18G156300 Glycine max HOM05D005373 ORTHO05D006617 2.2e-46 188.7 103 83.5
Phvul.008G134200 Phaseolus vulgaris HOM05D005373 ORTHO05D006617 2.2e-46 188.7 103 83.5
vmacro11045 Vaccinium macrocarpon HOM05D005373 ORTHO05D006617 2.2e-46 188.7 103 86.4
BcaB01g00749 Brassica carinata HOM05D005373 ORTHO05D006617 2.9e-46 188.3 103 85.4
Lalb_Chr03g0041301 Lupinus albus HOM05D005373 ORTHO05D006617 2.9e-46 188.3 103 82.5
BcaC07g39386 Brassica carinata HOM05D005373 ORTHO05D006617 3.7e-46 188.0 103 85.4
A06p18650 Brassica napus HOM05D005373 ORTHO05D006617 3.7e-46 188.0 103 85.4
C08p24090 Brassica napus HOM05D005373 ORTHO05D006617 3.7e-46 188.0 103 85.4
BolC8t50030H Brassica oleracea HOM05D005373 ORTHO05D006617 3.7e-46 188.0 103 85.4
BraA06t24943Z Brassica rapa HOM05D005373 ORTHO05D006617 3.7e-46 188.0 103 85.4
Nn3g19526 Nelumbo nucifera HOM05D005373 ORTHO05D006617 4.9e-46 187.6 109 83.5
Ciclev10023009m.g Citrus clementina HOM05D005373 ORTHO05D006617 6.4e-46 187.2 103 84.5
Haze_24544 Corylus avellana HOM05D005373 ORTHO05D006617 6.4e-46 187.2 129 74.4
Gorai.007G142700 Gossypium raimondii HOM05D005373 ORTHO05D006617 6.4e-46 187.2 103 86.4
BcaB02g09576 Brassica carinata HOM05D005373 ORTHO05D006617 8.3e-46 186.8 103 83.5
MSTRG.18297 Avicennia marina HOM05D005373 ORTHO05D006617 1.1e-45 186.4 103 82.5
BraA06t25747Z Brassica rapa HOM05D005373 ORTHO05D006617 1.4e-45 186.0 103 83.5
SGA_v2.0_scaffold1G00570 Striga asiatica HOM05D005373 ORTHO05D006617 1.4e-45 186.0 103 83.5
arahy.Tifrunner.gnm1.ann1.ZBI3RA Arachis hypogaea HOM05D005373 ORTHO05D006617 1.9e-45 185.7 129 73.6
A06p28050 Brassica napus HOM05D005373 ORTHO05D006617 1.9e-45 185.7 103 83.5
Peaxi162Scf00700g00135 Petunia axillaris HOM05D005373 ORTHO05D006617 1.9e-45 185.7 103 85.4
DCAR_012520 Daucus carota HOM05D005373 ORTHO05D006617 2.4e-45 185.3 103 86.4
Migut.D00388 Erythranthe guttata HOM05D005373 ORTHO05D006617 4.1e-45 184.5 103 82.5
PSO063G5966 Papaver somniferum HOM05D005373 ORTHO05D006617 7.0e-45 183.7 103 86.4
SGA_v2.0_scaffold138G35268 Striga asiatica HOM05D005373 ORTHO05D006617 7.0e-45 183.7 103 83.5
TWI18G0681 Tripterygium wilfordii HOM05D005373 ORTHO05D006617 7.0e-45 183.7 103 81.6
BcaC01g02388 Brassica carinata HOM05D005373 ORTHO05D006617 1.2e-44 183.0 103 82.5
BolC3t18839H Brassica oleracea HOM05D005373 ORTHO05D006617 1.2e-44 183.0 103 82.5
Duzib138G0987 Durio zibethinus HOM05D005373 ORTHO05D006617 1.2e-44 183.0 104 84.6
Solyc12g099820.1 Solanum lycopersicum HOM05D005373 ORTHO05D006617 1.2e-44 183.0 103 83.5
Sopen12g034450 Solanum pennellii HOM05D005373 ORTHO05D006617 1.2e-44 183.0 103 83.5
SalBow4G0280 Salvia bowleyana HOM05D005373 ORTHO05D006617 1.6e-44 182.6 103 80.6
CAN.G575.93 Capsicum annuum HOM05D005373 ORTHO05D006617 2.7e-44 181.8 103 84.5
C03p65820 Brassica napus HOM05D005373 ORTHO05D006617 6.0e-44 180.6 103 81.6
Nitab4.5_0002310g0090 Nicotiana tabacum HOM05D005373 ORTHO05D006617 7.8e-44 180.3 103 82.5
unitig_26.g10142 Utricularia gibba HOM05D005373 ORTHO05D006617 7.8e-44 180.3 103 79.6
Zm00001eb281280 Zea mays HOM05D005373 ORTHO05D006617 1.0e-43 179.9 103 80.6
PGSC0003DMG400004717 Solanum tuberosum HOM05D005373 ORTHO05D006617 1.3e-43 179.5 105 82.9
MSTRG.21508 Avicennia marina HOM05D005373 ORTHO05D006617 2.3e-43 178.7 103 82.5
HPP92_008005 Vanilla planifolia HOM05D005373 ORTHO05D006617 2.3e-43 178.7 103 80.6
HanXRQChr01g0005311 Helianthus annuus HOM05D005373 ORTHO05D006617 3.0e-43 178.3 103 85.4
HanXRQChr06g0164391 Helianthus annuus HOM05D005373 ORTHO05D006617 3.0e-43 178.3 103 85.4
Lsat_1_v5_gn_5_186641 Lactuca sativa HOM05D005373 ORTHO05D006617 6.6e-43 177.2 103 84.5
Zm00001eb379840 Zea mays HOM05D005373 ORTHO05D006617 8.6e-43 176.8 103 80.6
Migut.N02186 Erythranthe guttata HOM05D005373 ORTHO05D006617 1.2e-41 172.9 103 76.7
ECA248G2609 Erigeron canadensis HOM05D005373 ORTHO05D006617 2.1e-41 172.2 103 81.6
Ah.05g177620 Amaranthus hybridus HOM05D005373 ORTHO05D006617 4.0e-40 167.9 166 55.4
AagrBONN_evm.TU.Sc2ySwM_344.4653 Anthoceros agrestis HOM05D005373 ORTHO05D006617 2.0e-39 165.6 103 75.7
Hma1.2p1_1029F.1_g249680 Hydrangea macrophylla HOM05D005373 ORTHO05D006617 8.3e-38 160.2 78 96.2
Mapoly0042s0050 Marchantia polymorpha HOM05D005373 ORTHO05D006617 5.4e-37 157.5 103 70.9
Pp3c14_7880 Physcomitrium patens HOM05D005373 ORTHO05D006617 1.3e-35 152.9 103 69.9
CDE06G2230 Ceratophyllum demersum HOM05D005373 ORTHO05D006617 8.6e-35 150.2 87 81.6
CSS0047138 Camellia sinensis var. sinensis HOM05D005373 ORTHO05D006617 7.3e-34 147.1 103 72.8
Pp3c2_1790 Physcomitrium patens HOM05D005373 ORTHO05D006617 1.2e-33 146.4 103 65.0
Sabra02G0035300 Salix brachista HOM05D005373 ORTHO05D006617 2.6e-31 138.7 90 76.7
Gohir.D11G133500 Gossypium hirsutum HOM05D005373 ORTHO05D006617 1.7e-30 136.0 75 86.7
Gohir.A11G127860 Gossypium hirsutum HOM05D005373 ORTHO05D006617 2.4e-29 132.1 75 85.3
CBR_g18652 Chara braunii HOM05D005373 ORTHO05D006617 6.6e-27 124.0 103 59.2
Sed0007692 Sechium edule HOM05D005373 ORTHO05D006617 3.4e-23 111.7 79 70.9
Atru.chr7.944 Acer truncatum HOM05D005373 ORTHO05D006617 4.4e-23 111.3 57 87.7
Gohir.A12G149900 Gossypium hirsutum HOM05D005373 ORTHO05D006617 4.6e-20 101.3 56 83.9
Atru.chr2.3918 Acer truncatum HOM05D005373 ORTHO05D006617 7.8e-20 100.5 67 76.1
Cre12.g546250 Chlamydomonas reinhardtii HOM05D005373 ORTHO05D006617 6.2e-17 90.9 75 53.3
PRCOL_00002130 Prasinoderma coloniale HOM05D005373 ORTHO05D006617 6.2e-17 90.9 84 50.0
CSS0032008 Camellia sinensis var. sinensis HOM05D005373 ORTHO05D006617 1.8e-16 89.4 52 80.8
Gohir.A10G156200 Gossypium hirsutum HOM05D005373 ORTHO05D006617 4.0e-16 88.2 55 80.0
TWI36G0734 Tripterygium wilfordii HOM05D000030 ORTHO05D000009 2.0e-15 85.9 55 72.7
TAR636G2640 Trochodendron aralioides HOM05D007216 ORTHO05D009261 2.9e-14 82.0 52 80.8


User provided reference genes

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