Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 3.1e-47 191.4 95 100.0
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 4.1e-39 164.5 82 100.0
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 1.2e-38 162.9 82 90.2
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 5.0e-37 157.5 82 87.8
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 6.5e-37 157.1 83 97.6
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 3.6e-35 151.4 82 86.6
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 1.1e-33 146.4 82 89.0
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 9.7e-33 143.3 82 79.3
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 2.4e-31 138.7 82 84.1
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 2.4e-31 138.7 88 76.1
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 7.0e-31 137.1 82 76.8
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 9.1e-31 136.7 82 79.3
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 2.6e-30 135.2 98 68.4
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 2.6e-30 135.2 84 76.2
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 2.6e-30 135.2 84 76.2
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 3.5e-30 134.8 82 75.6
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 3.5e-30 134.8 82 75.6
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 3.5e-30 134.8 82 74.4
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 3.5e-30 134.8 82 81.7
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 3.5e-30 134.8 82 75.6
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 3.5e-30 134.8 82 78.0
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 3.5e-30 134.8 82 82.9
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 4.5e-30 134.4 82 78.0
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 5.9e-30 134.0 82 75.6
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 5.9e-30 134.0 82 75.6
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 7.7e-30 133.7 82 75.6
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 7.7e-30 133.7 80 81.2
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 7.7e-30 133.7 82 81.7
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 3.8e-29 131.3 82 81.7
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 3.8e-29 131.3 82 82.9
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 3.8e-29 131.3 85 72.9
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 3.8e-29 131.3 82 80.5
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 3.8e-29 131.3 82 80.5
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 6.5e-29 130.6 83 84.3
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 1.1e-28 129.8 82 73.2
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 1.9e-28 129.0 82 80.5
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 2.5e-28 128.6 83 72.3
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.5e-28 128.6 88 72.7
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 3.2e-28 128.3 82 80.5
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 3.2e-28 128.3 82 80.5
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 3.2e-28 128.3 84 81.0
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 5.5e-28 127.5 82 79.3
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 5.5e-28 127.5 82 79.3
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 5.5e-28 127.5 82 76.8
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 7.2e-28 127.1 82 72.0
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 9.4e-28 126.7 82 80.5
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 1.2e-27 126.3 82 79.3
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 2.1e-27 125.6 82 69.5
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 2.1e-27 125.6 82 81.7
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 2.7e-27 125.2 82 78.0
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 2.7e-27 125.2 82 78.0
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 3.6e-27 124.8 82 80.5
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 6.1e-27 124.0 82 73.2
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 8.0e-27 123.6 82 67.1
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 8.0e-27 123.6 82 70.7
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 1.0e-26 123.2 82 70.7
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 1.0e-26 123.2 84 81.0
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.0e-26 123.2 84 81.0
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.0e-26 123.2 84 81.0
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 1.0e-26 123.2 84 81.0
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 1.0e-26 123.2 82 70.7
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 1.4e-26 122.9 82 69.5
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 1.4e-26 122.9 82 70.7
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 1.4e-26 122.9 82 69.5
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 1.8e-26 122.5 82 76.8
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 1.8e-26 122.5 82 70.7
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 1.8e-26 122.5 82 70.7
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 1.8e-26 122.5 82 70.7
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 1.8e-26 122.5 83 78.3
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 2.3e-26 122.1 82 75.6
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 2.3e-26 122.1 82 75.6
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 2.3e-26 122.1 82 68.3
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 2.3e-26 122.1 82 73.2
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 2.3e-26 122.1 83 77.1
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 2.3e-26 122.1 83 77.1
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 3.0e-26 121.7 82 79.3
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 4.0e-26 121.3 82 75.6
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 4.0e-26 121.3 82 69.5
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 5.2e-26 120.9 82 74.4
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 5.2e-26 120.9 82 69.5
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 5.2e-26 120.9 82 75.6
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 6.7e-26 120.6 82 67.1
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 6.7e-26 120.6 82 75.6
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 8.8e-26 120.2 82 78.0
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 8.8e-26 120.2 82 74.4
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 1.2e-25 119.8 82 69.5
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 1.2e-25 119.8 82 74.4
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 1.5e-25 119.4 82 76.8
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 2.0e-25 119.0 82 69.5
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 2.0e-25 119.0 83 69.9
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 2.6e-25 118.6 82 65.9
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 3.3e-25 118.2 82 73.2
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 4.4e-25 117.9 82 73.2
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 4.4e-25 117.9 82 73.2
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 4.4e-25 117.9 82 73.2
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 4.4e-25 117.9 82 72.0
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 5.7e-25 117.5 82 67.1
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 5.7e-25 117.5 82 67.1
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 5.7e-25 117.5 82 74.4
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 7.5e-25 117.1 80 77.5
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 7.5e-25 117.1 94 61.7
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 7.5e-25 117.1 84 65.5
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 9.7e-25 116.7 82 64.6
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 1.7e-24 115.9 82 63.4
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 3.7e-24 114.8 85 71.8
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 6.3e-24 114.0 82 61.0
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 6.3e-24 114.0 82 73.2
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 8.2e-24 113.6 84 64.3
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 8.2e-24 113.6 82 72.0
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 3.5e-22 108.2 84 61.9
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 3.5e-22 108.2 82 72.0
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 4.5e-22 107.8 78 65.4
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 7.7e-22 107.1 82 70.7
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 7.7e-22 107.1 82 68.3
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.3e-21 106.3 79 62.0
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 3.8e-21 104.8 83 61.4
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 5.0e-21 104.4 82 68.3
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 6.5e-21 104.0 82 70.7
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 8.5e-21 103.6 82 69.5
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.1e-20 103.2 82 69.5
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.5e-20 102.1 82 68.3
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 7.2e-20 100.5 82 67.1
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 2.1e-19 99.0 82 67.1
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 2.7e-19 98.6 94 51.1
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 3.6e-19 98.2 84 51.2
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 4.0e-18 94.7 82 63.4
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 8.8e-18 93.6 89 49.4
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 1.2e-17 93.2 86 59.3
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 4.4e-17 91.3 80 56.2
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 7.5e-17 90.5 82 58.5
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 9.8e-17 90.1 70 61.4
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 2.2e-16 89.0 87 54.0
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.4e-15 86.3 65 61.5
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 1.2e-14 83.2 67 61.2
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 2.7e-14 82.0 100 45.0
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 7.2e-12 73.9 88 37.5
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 9.5e-12 73.6 84 42.9
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 5.2e-10 67.8 50 62.0
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 6.8e-10 67.4 82 46.3
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.2e-09 66.6 65 49.2
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 1.5e-09 66.2 31 90.3
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 9.8e-09 63.5 30 90.0
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 6.3e-08 60.8 31 80.6
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 1.4e-07 59.7 32 68.8
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 4.1e-07 58.2 30 80.0
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 5.4e-07 57.8 71 40.8
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 2.0e-06 55.8 52 48.1
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 3.5e-06 55.1 32 65.6


User provided reference genes

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