Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p071374 Quercus lobata HOM05D005429 ORTHO05D006697 7.3e-81 303.9 162 100.0
QL02p100061 Quercus lobata HOM05D005429 ORTHO05D006697 9.9e-70 266.9 166 89.2
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 6.9e-47 191.0 103 98.1
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 5.7e-41 171.4 102 88.2
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 6.3e-40 167.9 100 89.0
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 1.8e-39 166.4 98 90.8
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 1.8e-39 166.4 100 88.0
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 1.8e-39 166.4 100 88.0
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 1.8e-39 166.4 100 88.0
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 2.4e-39 166.0 103 86.4
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 2.4e-39 166.0 103 86.4
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 2.4e-39 166.0 103 86.4
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 2.4e-39 166.0 102 87.3
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 2.4e-39 166.0 102 87.3
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 5.3e-39 164.9 100 87.0
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 1.5e-38 163.3 98 87.8
Haze_03266 Corylus avellana HOM05D005429 ORTHO05D006697 2.0e-38 162.9 105 82.9
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 2.0e-38 162.9 101 85.1
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 2.6e-38 162.5 102 86.3
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 5.9e-38 161.4 103 82.5
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 1.3e-37 160.2 100 85.0
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 1.7e-37 159.8 102 83.3
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 1.7e-37 159.8 101 84.2
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 1.7e-37 159.8 102 85.3
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 1.7e-37 159.8 102 85.3
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 2.2e-37 159.5 102 84.3
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 2.9e-37 159.1 98 86.7
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 3.8e-37 158.7 103 81.6
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 5.0e-37 158.3 101 83.2
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 6.5e-37 157.9 101 83.2
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 6.5e-37 157.9 101 83.2
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 6.5e-37 157.9 100 84.0
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 6.5e-37 157.9 100 85.0
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 8.5e-37 157.5 101 83.2
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 1.1e-36 157.1 96 87.5
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 1.1e-36 157.1 96 87.5
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 1.4e-36 156.8 98 83.7
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 1.9e-36 156.4 103 80.6
Peaxi162Scf00003g04025 Petunia axillaris HOM05D005429 ORTHO05D006697 1.9e-36 156.4 117 76.1
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 3.2e-36 155.6 98 84.7
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 4.2e-36 155.2 96 86.5
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 5.5e-36 154.8 98 85.7
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 7.2e-36 154.5 98 82.7
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 7.2e-36 154.5 102 82.4
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 9.4e-36 154.1 98 81.6
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 9.4e-36 154.1 96 86.5
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 1.2e-35 153.7 96 86.5
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.6e-35 153.3 98 83.7
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 2.1e-35 152.9 102 79.4
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 2.7e-35 152.5 96 82.3
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 2.7e-35 152.5 102 79.4
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 3.6e-35 152.1 98 82.7
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 3.6e-35 152.1 98 83.7
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 3.6e-35 152.1 102 79.4
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 4.7e-35 151.8 98 82.7
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 4.7e-35 151.8 102 79.4
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 6.1e-35 151.4 99 80.8
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 6.1e-35 151.4 96 81.2
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 7.9e-35 151.0 96 83.3
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 7.9e-35 151.0 96 83.3
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 7.9e-35 151.0 98 78.6
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 7.9e-35 151.0 96 81.2
Oeu051694.1 Olea europaea HOM05D005429 ORTHO05D006697 7.9e-35 151.0 101 81.2
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 1.0e-34 150.6 94 87.2
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 1.0e-34 150.6 102 79.4
Hma1.2p1_0817F.1_g223090 Hydrangea macrophylla HOM05D005429 ORTHO05D006697 1.0e-34 150.6 113 76.1
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 1.0e-34 150.6 94 83.0
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 1.0e-34 150.6 98 80.6
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 1.4e-34 150.2 96 79.2
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 1.4e-34 150.2 96 79.2
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 1.4e-34 150.2 96 79.2
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 1.8e-34 149.8 96 80.2
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 1.8e-34 149.8 98 82.7
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 1.8e-34 149.8 102 77.5
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 2.3e-34 149.4 98 82.7
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 2.3e-34 149.4 97 81.4
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 3.0e-34 149.1 96 78.1
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 3.0e-34 149.1 96 83.3
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 3.0e-34 149.1 98 81.6
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 5.1e-34 148.3 114 74.6
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 5.1e-34 148.3 100 77.0
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 6.7e-34 147.9 93 84.9
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 8.8e-34 147.5 96 79.2
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 1.5e-33 146.7 104 76.9
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 2.0e-33 146.4 102 76.5
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 2.0e-33 146.4 102 76.5
Peaxi162Scf03393g00016 Petunia axillaris HOM05D005429 ORTHO05D006697 2.6e-33 146.0 91 85.7
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 3.3e-33 145.6 96 82.3
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 4.4e-33 145.2 96 77.1
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 4.4e-33 145.2 94 79.8
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 4.4e-33 145.2 94 79.8
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 4.4e-33 145.2 94 79.8
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 5.7e-33 144.8 98 75.5
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 5.7e-33 144.8 102 75.5
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 5.7e-33 144.8 96 81.2
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 7.4e-33 144.4 102 76.5
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 9.7e-33 144.1 94 78.7
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 1.3e-32 143.7 96 77.1
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 1.7e-32 143.3 96 79.2
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 2.2e-32 142.9 96 76.0
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.2e-32 142.9 94 78.7
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 2.8e-32 142.5 97 77.3
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 2.8e-32 142.5 98 75.5
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 2.8e-32 142.5 95 77.9
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 3.7e-32 142.1 102 75.5
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 4.8e-32 141.7 97 79.4
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 6.3e-32 141.4 97 74.2
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 6.3e-32 141.4 99 76.8
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 8.2e-32 141.0 96 75.0
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 1.4e-31 140.2 96 75.0
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 9.1e-31 137.5 103 70.9
Aqoxy3G02314 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 1.0e-29 134.0 86 83.7
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 3.8e-29 132.1 98 72.4
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 5.0e-29 131.7 96 72.9
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 5.0e-29 131.7 94 74.5
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 6.5e-29 131.3 91 76.9
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 6.5e-29 131.3 92 72.8
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 2.5e-28 129.4 101 65.3
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 3.0e-26 122.5 96 67.7
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 8.8e-26 120.9 100 63.0
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 5.7e-25 118.2 92 66.3
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.8e-24 115.9 69 88.4
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 1.8e-23 113.2 98 60.2
Zm00001eb335330 Zea mays HOM05D005429 ORTHO05D006697 2.4e-23 112.8 97 66.0
MD02G1009700 Malus domestica HOM05D005429 ORTHO05D006697 4.1e-23 112.1 102 62.7
Pp3c20_1390 Physcomitrium patens HOM05D005429 ORTHO05D006697 3.5e-22 109.0 107 56.1
Oeu050474.1 Olea europaea HOM05D005429 ORTHO05D006697 1.7e-21 106.7 68 82.4
Eucgr.L02967 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.9e-21 105.9 101 61.4
Pp3c24_19620 Physcomitrium patens HOM05D005429 ORTHO05D006697 2.9e-21 105.9 100 55.0
AagrBONN_evm.TU.Sc2ySwM_117.1673 Anthoceros agrestis HOM05D005429 ORTHO05D006697 4.2e-20 102.1 90 57.8
SMO141G0142 Selaginella moellendorffii HOM05D005429 ORTHO05D006697 2.1e-19 99.8 100 55.0
Peaxi162Scf03393g00018 Petunia axillaris HOM05D005429 ORTHO05D006697 3.6e-19 99.0 65 78.5
Os01g0132700 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 1.0e-18 97.4 96 56.2
Eucgr.C04269 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.7e-16 90.1 96 57.3
CAN.G1618.6 Capsicum annuum HOM05D005429 ORTHO05D006697 9.1e-15 84.3 67 67.2
CAN.G584.55 Capsicum annuum HOM05D005429 ORTHO05D006697 9.1e-15 84.3 67 67.2
Peaxi162Scf00003g04026 Petunia axillaris HOM05D000011 ORTHO05D011267 1.2e-09 67.4 47 72.3
SGA_v2.0_scaffold19G08607 Striga asiatica HOM05D005429 ORTHO05D006697 2.6e-09 66.2 83 53.0
SGA_v2.0_scaffold19G08613 Striga asiatica HOM05D005429 ORTHO05D006697 2.6e-09 66.2 70 58.6
SGA_v2.0_scaffold711G53500 Striga asiatica HOM05D005429 ORTHO05D006697 2.6e-09 66.2 83 53.0


User provided reference genes

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