Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 0.0e+00 1198.0 593 100.0
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 3.2e-291 1004.6 527 95.4
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 1.1e-286 989.6 532 93.6
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 2.4e-283 978.4 533 92.7
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 5.5e-283 977.2 527 93.4
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 1.0e-281 973.0 525 93.3
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 3.0e-281 971.5 527 92.8
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 2.5e-280 968.4 527 92.8
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 2.5e-280 968.4 527 92.8
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 3.3e-280 968.0 527 93.0
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 7.4e-280 966.8 527 93.0
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 7.4e-280 966.8 527 93.0
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 6.2e-279 963.8 527 92.6
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 1.8e-278 962.2 526 92.6
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 2.7e-274 948.3 527 91.3
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 2.7e-274 948.3 527 91.3
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 2.7e-274 948.3 527 91.3
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 2.7e-274 948.3 527 91.3
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 2.7e-274 948.3 527 91.3
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 1.3e-273 946.0 524 91.6
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 3.0e-273 944.9 524 91.2
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.9e-265 917.9 498 93.0
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.9e-265 917.9 498 93.0
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.9e-265 917.9 498 93.0
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 2.2e-263 912.1 498 92.4
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 3.8e-260 901.4 527 87.9
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 3.2e-259 898.3 498 91.6
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 3.9e-257 891.3 498 90.8
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 6.3e-255 884.0 498 90.8
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 5.9e-253 877.5 516 88.4
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 1.4e-251 872.8 533 85.0
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 1.2e-245 853.2 525 84.0
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 8.5e-244 847.0 527 82.5
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 3.0e-241 838.6 456 92.8
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 5.7e-240 834.3 508 85.8
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 3.7e-239 831.6 501 86.6
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 1.0e-233 813.5 498 84.7
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.3e-228 796.6 479 85.4
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 2.5e-227 792.3 488 85.0
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 1.4e-225 786.6 530 79.1
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 8.6e-220 767.3 456 87.1
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 2.6e-216 755.7 421 91.7
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 9.8e-216 753.8 420 91.7
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 2.2e-215 752.7 454 85.9
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 1.7e-212 743.0 488 80.9
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 6.6e-212 741.1 451 85.6
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 3.5e-197 692.2 391 90.3
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 4.7e-194 681.8 461 78.3
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 3.4e-184 649.0 456 76.1
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 9.9e-184 647.5 354 91.8
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 3.8e-175 619.0 460 73.5
SHI26645 Sapria himalayana HOM05D004537 ORTHO05D005492 4.8e-170 602.1 317 93.4
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 5.5e-166 588.6 400 77.5
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.3e-151 540.8 354 79.4
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 4.2e-150 535.8 297 92.9
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.2e-149 534.3 529 58.8
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 7.7e-144 515.0 284 90.5
RhsimMtG0000400 Rhododendron simsii HOM05D004537 ORTHO05D005492 5.5e-142 508.8 317 82.3
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 3.9e-140 502.7 284 89.1
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 3.3e-139 499.6 365 73.2
unitig_87.g28000 Utricularia gibba HOM05D004537 ORTHO05D005492 2.1e-133 480.3 253 93.7
HanXRQChr08g0236111 Helianthus annuus HOM05D004537 ORTHO05D005492 1.1e-131 474.6 253 92.9
Psat0s12108g0080 Pisum sativum HOM05D004537 ORTHO05D005492 9.7e-131 471.5 253 92.5
Ah.14g079610 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.3e-127 461.1 250 91.6
Solyc11g063610.3 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.7e-127 460.7 265 90.2
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 8.5e-127 458.4 659 45.8
unitig_87.g28001 Utricularia gibba HOM05D004537 ORTHO05D005492 5.9e-120 435.6 242 92.1
Pp3c4_28940 Physcomitrium patens HOM05D004537 ORTHO05D005492 7.7e-120 435.3 274 81.0
Pp3c4_28946 Physcomitrium patens HOM05D004537 ORTHO05D005492 7.7e-120 435.3 274 81.0
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 1.1e-118 431.4 527 51.4
LjContig00315g0010412 Lotus japonicus HOM05D004537 ORTHO05D005492 1.8e-113 414.1 307 72.3
PSO384G3370 Papaver somniferum HOM05D004537 ORTHO05D005492 1.4e-108 397.9 227 91.2
RcHm_v2.0_MTg0498791 Rosa chinensis HOM05D004537 ORTHO05D005492 1.2e-107 394.8 235 87.7
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 5.9e-104 382.5 312 70.5
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 1.9e-102 377.5 235 81.3
HanXRQChr04g0127221 Helianthus annuus HOM05D004537 ORTHO05D005492 2.5e-102 377.1 222 89.6
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 4.9e-98 362.8 354 59.6
Nn003s41396 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.4e-97 361.3 188 93.6
Nn1g09964 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.4e-97 361.3 188 93.6
Nn1g10125 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.4e-97 361.3 188 93.6
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 1.9e-94 350.9 432 48.8
HanXRQChr04g0127211 Helianthus annuus HOM05D004537 ORTHO05D005492 3.3e-94 350.1 188 91.5
BraSC48t46325Z Brassica rapa HOM05D004537 ORTHO05D005492 4.3e-94 349.7 201 90.0
RcHm_v2.0_MTg0498781 Rosa chinensis HOM05D004537 ORTHO05D005492 5.6e-94 349.4 188 91.0
SMO053G0009 Selaginella moellendorffii HOM05D004537 ORTHO05D005492 9.5e-86 322.0 427 50.4
MD13G1127000 Malus domestica HOM05D004537 ORTHO05D005492 3.6e-85 320.1 262 72.5
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 1.5e-83 314.7 504 42.1
TPR.G4012 Trifolium pratense HOM05D004537 ORTHO05D005492 2.0e-83 314.3 161 97.5
Solyc08g029280.2 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.7e-82 310.1 321 56.7
CAN.G61.11 Capsicum annuum HOM05D004537 ORTHO05D005492 6.0e-80 302.8 328 54.0
CAN.G416.37 Capsicum annuum HOM05D004537 ORTHO05D005492 1.9e-78 297.7 197 76.6
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 9.6e-70 268.9 434 44.7
Solyc02g021770.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 4.7e-69 266.5 159 85.5
Haze_27101 Corylus avellana HOM05D004537 ORTHO05D005492 2.6e-67 260.8 373 39.4
PGR071G0006 Punica granatum HOM05D004537 ORTHO05D005492 2.7e-56 224.2 164 73.8
SHI27475 Sapria himalayana HOM05D004537 ORTHO05D005492 2.7e-56 224.2 183 67.2
SHI26667 Sapria himalayana HOM05D004537 ORTHO05D005492 4.6e-56 223.4 244 54.9
MELO3C027747.2 Cucumis melo HOM05D004537 ORTHO05D005492 6.0e-56 223.0 118 94.1
BraSC48t46324Z Brassica rapa HOM05D004537 ORTHO05D005492 3.9e-55 220.3 234 57.7
MELO3C021523.2 Cucumis melo HOM05D004537 ORTHO05D005492 1.8e-52 211.5 148 77.0
Lalb_Chr11g0071071 Lupinus albus HOM05D004537 ORTHO05D005492 2.0e-51 208.0 128 81.2
SHI20135 Sapria himalayana HOM05D004537 ORTHO05D005492 2.0e-51 208.0 171 64.3
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 2.0e-51 208.0 134 70.9
Ah.10g027900 Amaranthus hybridus HOM05D004537 ORTHO05D005492 6.0e-48 196.4 112 85.7
Ah.10g028280 Amaranthus hybridus HOM05D004537 ORTHO05D005492 6.0e-48 196.4 112 85.7
Haze_27411 Corylus avellana HOM05D004537 ORTHO05D005492 1.3e-47 195.3 283 46.6
Migut.E01634 Erythranthe guttata HOM05D004537 ORTHO05D005492 5.1e-47 193.4 138 76.8
CARHR288190 Cardamine hirsuta HOM05D004537 ORTHO05D005492 6.7e-47 193.0 104 89.4
HPP92_007209 Vanilla planifolia HOM05D004537 ORTHO05D005492 2.5e-46 191.0 100 94.0
Migut.E00896 Erythranthe guttata HOM05D004537 ORTHO05D005492 2.1e-45 188.0 137 75.9
SHI27477 Sapria himalayana HOM05D004537 ORTHO05D005492 8.2e-45 186.0 227 51.1
SalBow1G2743 Salvia bowleyana HOM05D004537 ORTHO05D005492 1.7e-42 178.3 94 91.5
HanXRQChr05g0159721 Helianthus annuus HOM05D004537 ORTHO05D005492 6.5e-42 176.4 109 78.0
SGA_v2.0_scaffold400G50927 Striga asiatica HOM05D004537 ORTHO05D005492 2.5e-41 174.5 93 90.3
Eucgr.E01613 Eucalyptus grandis HOM05D004537 ORTHO05D005492 2.1e-40 171.4 95 92.6
Aa31csc464G10 Aethionema arabicum HOM05D004537 ORTHO05D005492 1.3e-39 168.7 90 91.1
Medtr8g106255 Medicago truncatula HOM05D004537 ORTHO05D005492 2.3e-39 167.9 91 90.1
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 3.9e-39 167.2 153 65.4
Nitab4.5_0000074g0200 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.9e-38 164.9 104 77.9
CAN.G889.6 Capsicum annuum HOM05D004537 ORTHO05D005492 3.3e-38 164.1 91 91.2
CAN.G60.10 Capsicum annuum HOM05D004537 ORTHO05D005492 3.7e-37 160.6 160 60.0
Medtr0024s0110 Medicago truncatula HOM05D004537 ORTHO05D005492 1.1e-36 159.1 197 48.7
Lsat_1_v5_gn_8_134521 Lactuca sativa HOM05D004537 ORTHO05D005492 5.3e-36 156.8 98 79.6
CAN.G999.40 Capsicum annuum HOM05D004537 ORTHO05D005492 3.8e-34 150.6 156 59.0
SHI01747 Sapria himalayana HOM05D004537 ORTHO05D005492 8.5e-34 149.4 163 59.5
Nitab4.5_0000161g0030 Nicotiana tabacum HOM05D008163 ORTHO05D010305 1.4e-33 148.7 139 58.3
SHI26666 Sapria himalayana HOM05D004537 ORTHO05D005492 4.2e-33 147.1 106 72.6
SHI36146 Sapria himalayana HOM05D004537 ORTHO05D005492 4.2e-33 147.1 85 85.9
SHI27476 Sapria himalayana HOM05D004537 ORTHO05D005492 2.1e-32 144.8 92 79.3
Glyma.03G094400 Glycine max HOM05D004537 ORTHO05D005492 3.6e-32 144.1 81 86.4
Lsat_1_v5_gn_4_114400 Lactuca sativa HOM05D004537 ORTHO05D005492 5.7e-30 136.7 89 77.5
Lalb_Chr20g0115011 Lupinus albus HOM05D004537 ORTHO05D005492 7.4e-30 136.3 112 70.5
SHI20133 Sapria himalayana HOM05D004537 ORTHO05D005492 3.8e-26 124.0 80 81.2
Lalb_Chr00c21g0405811 Lupinus albus HOM05D004537 ORTHO05D005492 1.6e-24 118.6 56 98.2
Solyc08g029290.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 8.8e-23 112.8 76 73.7
GSVIVG01012277001 Vitis vinifera HOM05D004537 ORTHO05D005492 1.5e-22 112.1 238 37.4
HanXRQChr16g0503301 Helianthus annuus HOM05D004537 ORTHO05D005492 9.7e-22 109.4 107 57.0
GSVIVG01020676001 Vitis vinifera HOM05D004537 ORTHO05D005492 2.2e-21 108.2 129 54.3
Nitab4.5_0001234g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 8.2e-21 106.3 92 70.7
ClCG09G001530 Citrullus lanatus HOM05D004537 ORTHO05D005492 2.6e-19 101.3 68 77.9
Mapoly0006s0021 Marchantia polymorpha HOM05D004537 ORTHO05D005492 3.5e-19 100.9 64 78.1
CAN.G1103.8 Capsicum annuum HOM05D004537 ORTHO05D005492 1.7e-18 98.6 53 84.9
C04p32420 Brassica napus HOM05D004537 ORTHO05D005492 6.5e-18 96.7 70 74.3
Nitab4.5_0001127g0350 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.2e-16 92.4 50 86.0
ECA240G1937 Erigeron canadensis HOM05D004537 ORTHO05D011667 1.4e-15 89.0 46 93.5
EL10Ac5g12760 Beta vulgaris HOM05D004537 ORTHO05D005492 1.8e-15 88.6 45 91.1
TPR.G39033 Trifolium pratense HOM05D004537 ORTHO05D005492 4.4e-14 84.0 50 82.0
Nitab4.5_0002322g0200 Nicotiana tabacum HOM05D004537 ORTHO05D015169 8.2e-13 79.7 41 92.7
MELO3C021574.2 Cucumis melo HOM05D004537 ORTHO05D005492 4.1e-12 77.4 50 80.0
SHI20134 Sapria himalayana HOM05D004537 ORTHO05D005492 9.1e-12 76.3 50 76.0
Haze_02784 Corylus avellana HOM05D000212 ORTHO05D164571 2.0e-11 75.1 72 52.8
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 6.5e-10 70.1 36 86.1
TPR.G9938 Trifolium pratense HOM05D004537 ORTHO05D005492 6.5e-10 70.1 46 73.9
BolC4t24790H Brassica oleracea HOM05D004537 ORTHO05D005492 2.5e-09 68.2 35 88.6
ATR1125G006 Amborella trichopoda HOM05D004537 ORTHO05D005492 7.2e-09 66.6 33 87.9
arahy.Tifrunner.gnm1.ann1.7DQW64 Arachis hypogaea HOM05D000963 ORTHO05D005131 7.2e-09 66.6 34 91.2
Ah.03g142980 Amaranthus hybridus HOM05D001159 ORTHO05D005492 9.4e-09 66.2 48 75.0
Cfa011096 Carpinus fangiana HOM05D000212 ORTHO05D000225 1.4e-07 62.4 55 56.4
SHI30018 Sapria himalayana HOM05D004537 ORTHO05D005492 4.0e-07 60.8 56 62.5
Nitab4.5_0003938g0030 Nicotiana tabacum HOM05D004537 ORTHO05D005492 8.8e-07 59.7 50 62.0


User provided reference genes

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