Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 5.2e-84 314.3 155 100.0
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 5.2e-84 314.3 155 100.0
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 2.5e-78 295.4 147 98.0
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 2.8e-77 292.0 145 97.2
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 1.7e-74 282.7 151 91.4
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 3.7e-74 281.6 151 90.7
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 1.4e-73 279.6 151 90.1
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 1.9e-73 279.3 151 90.1
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 2.4e-73 278.9 151 90.1
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 2.4e-73 278.9 151 90.1
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 2.4e-73 278.9 151 90.1
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 2.4e-73 278.9 151 90.1
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 3.2e-73 278.5 151 90.1
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 4.1e-73 278.1 151 89.4
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 5.4e-73 277.7 151 89.4
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 5.4e-73 277.7 151 89.4
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 5.4e-73 277.7 151 89.4
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 5.4e-73 277.7 151 89.4
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 5.4e-73 277.7 151 89.4
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 7.0e-73 277.3 148 91.2
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 7.0e-73 277.3 152 88.2
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 7.0e-73 277.3 151 90.1
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 7.0e-73 277.3 151 89.4
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 9.2e-73 276.9 148 91.2
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 9.2e-73 276.9 151 89.4
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 9.2e-73 276.9 149 89.9
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 1.2e-72 276.6 151 89.4
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 1.2e-72 276.6 151 89.4
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.6e-72 276.2 151 88.1
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.6e-72 276.2 151 88.1
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.6e-72 276.2 151 88.1
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.6e-72 276.2 151 88.1
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.6e-72 276.2 151 88.1
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 1.6e-72 276.2 151 88.7
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 1.6e-72 276.2 147 91.2
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 1.6e-72 276.2 147 91.2
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 1.6e-72 276.2 151 88.1
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 1.6e-72 276.2 151 88.7
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 2.0e-72 275.8 147 91.2
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 2.7e-72 275.4 147 90.5
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 2.7e-72 275.4 151 88.1
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 2.7e-72 275.4 148 90.5
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 2.7e-72 275.4 149 88.6
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 2.7e-72 275.4 151 88.1
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 3.5e-72 275.0 148 90.5
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 3.5e-72 275.0 148 90.5
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 3.5e-72 275.0 151 87.4
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 3.5e-72 275.0 144 91.7
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 4.6e-72 274.6 151 88.1
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 4.6e-72 274.6 155 86.5
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 4.6e-72 274.6 151 89.4
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 4.6e-72 274.6 149 90.6
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 4.6e-72 274.6 151 89.4
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 6.0e-72 274.2 151 88.7
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 6.0e-72 274.2 149 89.9
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 6.0e-72 274.2 147 89.1
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 7.8e-72 273.9 151 88.7
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 7.8e-72 273.9 148 89.9
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 7.8e-72 273.9 151 86.8
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 7.8e-72 273.9 151 86.8
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 7.8e-72 273.9 147 90.5
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 7.8e-72 273.9 146 89.7
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 7.8e-72 273.9 146 89.7
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 1.0e-71 273.5 151 87.4
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 1.0e-71 273.5 148 89.9
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 1.0e-71 273.5 144 91.0
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 1.3e-71 273.1 143 92.3
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 1.3e-71 273.1 143 92.3
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 1.7e-71 272.7 152 86.2
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.7e-71 272.7 151 86.8
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 2.3e-71 272.3 146 91.1
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 2.3e-71 272.3 147 89.8
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 2.3e-71 272.3 147 89.8
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 3.0e-71 271.9 155 84.5
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 3.0e-71 271.9 151 87.4
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 3.9e-71 271.6 147 88.4
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 3.9e-71 271.6 147 89.8
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 3.9e-71 271.6 147 89.8
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 5.0e-71 271.2 151 86.8
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 5.0e-71 271.2 147 88.4
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 6.6e-71 270.8 147 89.8
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 8.6e-71 270.4 148 86.5
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 8.6e-71 270.4 148 88.5
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 8.6e-71 270.4 147 87.8
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 1.1e-70 270.0 147 87.8
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 1.1e-70 270.0 143 90.9
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.5e-70 269.6 147 87.8
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 1.9e-70 269.2 147 87.8
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 1.9e-70 269.2 151 87.4
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 1.9e-70 269.2 151 86.1
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 1.9e-70 269.2 143 89.5
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 1.9e-70 269.2 143 89.5
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 1.9e-70 269.2 143 89.5
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 1.9e-70 269.2 153 85.6
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 1.9e-70 269.2 143 89.5
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 3.3e-70 268.5 147 88.4
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 3.3e-70 268.5 147 88.4
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 4.3e-70 268.1 147 88.4
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 4.3e-70 268.1 147 88.4
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 4.3e-70 268.1 147 85.7
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 7.3e-70 267.3 147 89.1
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 7.3e-70 267.3 147 87.8
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 7.3e-70 267.3 147 87.8
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 7.3e-70 267.3 147 87.8
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 2.1e-69 265.8 147 86.4
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 2.1e-69 265.8 143 89.5
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 3.6e-69 265.0 147 86.4
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 8.0e-69 263.8 150 85.3
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 1.1e-68 263.5 147 85.7
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 1.2e-67 260.0 155 83.2
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 2.6e-67 258.8 143 87.4
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 4.9e-66 254.6 138 88.4
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 8.3e-66 253.8 143 86.7
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 2.1e-64 249.2 139 86.3
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 1.3e-63 246.5 135 87.4
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 5.6e-62 241.1 131 89.3
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 7.3e-62 240.7 146 80.1
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 7.3e-62 240.7 132 87.9
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 1.6e-61 239.6 128 89.8
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 2.1e-61 239.2 130 86.9
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 3.6e-61 238.4 132 85.6
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 4.7e-61 238.0 150 78.7
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 6.2e-61 237.7 150 78.7
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 6.2e-61 237.7 130 89.2
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 6.2e-61 237.7 130 89.2
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 6.2e-61 237.7 131 87.0
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 8.1e-61 237.3 140 82.9
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.8e-60 236.1 134 84.3
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 1.8e-60 236.1 128 88.3
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 1.8e-60 236.1 126 88.1
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 2.3e-60 235.7 124 88.7
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 3.1e-60 235.3 135 83.0
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 3.1e-60 235.3 128 88.3
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 5.2e-60 234.6 132 84.8
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 6.8e-60 234.2 130 86.9
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 8.9e-60 233.8 128 88.3
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 8.9e-60 233.8 151 78.8
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.2e-59 233.4 143 81.1
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 1.5e-59 233.0 140 81.4
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 2.0e-59 232.6 184 67.9
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 3.4e-59 231.9 130 85.4
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 3.7e-58 228.4 144 72.2
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 3.7e-58 228.4 145 71.7
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 6.4e-58 227.6 126 86.5
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 1.2e-56 223.4 140 77.9
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 2.7e-56 222.2 151 70.9
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 1.7e-55 219.5 116 92.2
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 1.6e-53 213.0 157 70.7
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 2.1e-48 196.1 143 71.3
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 1.0e-47 193.7 102 91.2
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 3.0e-47 192.2 102 89.2
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 8.7e-47 190.7 123 73.2
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 1.9e-46 189.5 102 89.2
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 4.8e-45 184.9 115 74.8
C08p54180 Brassica napus HOM05D004227 ORTHO05D005027 1.9e-41 172.9 114 78.9
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 3.9e-39 165.2 87 89.7
CBR_g19771 Chara braunii HOM05D004227 ORTHO05D005027 5.3e-36 154.8 80 93.8
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 2.0e-35 152.9 87 80.5
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 7.1e-33 144.4 83 83.1
Rhsim13G0168700 Rhododendron simsii HOM05D004227 ORTHO05D005027 3.5e-32 142.1 72 95.8
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 2.5e-30 136.0 142 54.2
MD00G1129300 Malus domestica HOM05D004227 ORTHO05D005027 8.1e-29 131.0 74 82.4
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 3.8e-26 122.1 71 84.5
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 3.2e-25 119.0 71 83.1
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 1.6e-24 116.7 71 81.7
Actinidia01038 Actinidia chinensis HOM05D004227 ORTHO05D005027 1.6e-21 106.7 76 71.1
Sed0011381 Sechium edule HOM05D004227 ORTHO05D373379 1.0e-15 87.4 44 95.5
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 5.7e-14 81.6 46 84.8
Haze_23858 Corylus avellana HOM05D004227 ORTHO05D034883 7.4e-14 81.3 74 58.1


User provided reference genes

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