Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p017855 Quercus lobata HOM05D006097 ORTHO05D008538 0.0e+00 1184.1 588 100.0
CiPaw.14G007600 Carya illinoinensis HOM05D006097 ORTHO05D008538 1.6e-274 949.1 588 79.3
Haze_03039 Corylus avellana HOM05D006097 ORTHO05D008538 2.0e-269 932.2 590 78.6
Dinv22036 Davidia involucrata HOM05D006097 ORTHO05D008538 7.3e-264 913.7 588 76.0
Cfa010917 Carpinus fangiana HOM05D006097 ORTHO05D008538 1.1e-262 909.8 621 74.6
Prupe.2G036100 Prunus persica HOM05D006097 ORTHO05D008538 4.0e-262 907.9 587 76.5
GSVIVG01013488001 Vitis vinifera HOM05D006097 ORTHO05D008538 2.6e-261 905.2 589 76.2
Atru.chr7.628 Acer truncatum HOM05D006097 ORTHO05D008538 5.6e-256 887.5 588 74.7
MD07G1040200 Malus domestica HOM05D006097 ORTHO05D008538 1.8e-254 882.5 588 74.1
Ciclev10004623m.g Citrus clementina HOM05D006097 ORTHO05D008538 1.5e-253 879.4 588 73.8
COL.COLO4_20657 Corchorus olitorius HOM05D006097 ORTHO05D008538 2.4e-251 872.1 588 72.6
Actinidia21518 Actinidia chinensis HOM05D006097 ORTHO05D008538 1.8e-249 865.9 588 72.6
Thecc.10G154600 Theobroma cacao HOM05D006097 ORTHO05D008538 3.9e-249 864.8 588 72.4
Gohir.A06G175000 Gossypium hirsutum HOM05D006097 ORTHO05D008538 1.1e-248 863.2 588 72.4
Manes.04G159300 Manihot esculenta HOM05D006097 ORTHO05D008538 1.1e-248 863.2 589 72.7
Gohir.D06G184900 Gossypium hirsutum HOM05D006097 ORTHO05D008538 1.3e-247 859.8 588 72.4
RcHm_v2.0_Chr1g0324291 Rosa chinensis HOM05D006097 ORTHO05D008538 1.3e-247 859.8 583 73.1
FAN01G0546 Fragaria x ananassa HOM05D006097 ORTHO05D008538 1.8e-246 855.9 539 75.5
Gorai.010G216200 Gossypium raimondii HOM05D006097 ORTHO05D008538 3.1e-246 855.1 590 72.2
Potri.003G196300 Populus trichocarpa HOM05D006097 ORTHO05D008538 1.0e-244 850.1 588 71.3
Duzib114G0946 Durio zibethinus HOM05D006097 ORTHO05D008538 1.3e-244 849.7 588 72.3
Medtr3g014750 Medicago truncatula HOM05D006097 ORTHO05D008538 3.2e-243 845.1 589 71.1
TPR.G17806 Trifolium pratense HOM05D006097 ORTHO05D008538 5.5e-243 844.3 590 70.8
Lj3g0013868 Lotus japonicus HOM05D006097 ORTHO05D008538 2.7e-242 842.0 585 71.3
Peaxi162Scf00767g00518 Petunia axillaris HOM05D006097 ORTHO05D008538 6.0e-242 840.9 540 74.6
THA.LOC104826726 Tarenaya hassleriana HOM05D006097 ORTHO05D008538 6.0e-242 840.9 588 69.4
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 5.1e-241 837.8 532 74.8
Nn2g14836 Nelumbo nucifera HOM05D006097 ORTHO05D008538 3.3e-240 835.1 588 70.4
Glyma.13G197200 Glycine max HOM05D006097 ORTHO05D008538 5.7e-240 834.3 586 70.6
Sabra03G0146400 Salix brachista HOM05D006097 ORTHO05D008538 1.3e-239 833.2 613 67.4
Nitab4.5_0001621g0010 Nicotiana tabacum HOM05D006097 ORTHO05D008538 1.1e-238 830.1 584 69.9
Hund13358 Selenicereus undatus HOM05D006097 ORTHO05D008538 1.1e-238 830.1 588 69.6
CsaV3_5G036770 Cucumis sativus L. HOM05D006097 ORTHO05D008538 1.4e-238 829.7 542 73.4
PGR031G1965 Punica granatum HOM05D006097 ORTHO05D008538 9.0e-238 827.0 588 70.9
Psat5g221440 Pisum sativum HOM05D006097 ORTHO05D008538 2.6e-237 825.5 589 69.3
PSO339G1331 Papaver somniferum HOM05D006097 ORTHO05D008538 3.4e-237 825.1 587 68.8
Migut.N01845 Erythranthe guttata HOM05D006097 ORTHO05D008538 1.0e-236 823.5 585 69.2
CAN.G176.2 Capsicum annuum HOM05D006097 ORTHO05D008538 1.3e-236 823.2 587 69.0
Sopen08g005450 Solanum pennellii HOM05D006097 ORTHO05D008538 2.5e-235 818.9 585 69.2
SGA_v2.0_scaffold232G43504 Striga asiatica HOM05D006097 ORTHO05D008538 2.5e-235 818.9 586 69.5
ECA236G3136 Erigeron canadensis HOM05D006097 ORTHO05D008538 1.0e-233 813.5 535 71.6
Lalb_Chr19g0132421 Lupinus albus HOM05D006097 ORTHO05D008538 1.4e-233 813.1 586 68.4
HanXRQChr04g0113861 Helianthus annuus HOM05D006097 ORTHO05D008538 3.0e-233 812.0 586 68.4
CANSAT56G2143 Cannabis sativa HOM05D006097 ORTHO05D008538 1.1e-232 810.1 582 66.7
Thhalv10010237m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 3.3e-232 808.5 588 67.3
arahy.Tifrunner.gnm1.ann1.HF4B4K Arachis hypogaea HOM05D006097 ORTHO05D008538 9.7e-232 807.0 637 64.2
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 6.3e-231 804.3 552 70.3
BraA04t16135Z Brassica rapa HOM05D006097 ORTHO05D008538 5.3e-230 801.2 588 66.3
Ah.12g062830 Amaranthus hybridus HOM05D006097 ORTHO05D008538 3.4e-229 798.5 550 69.8
Sp5g06630 Schrenkiella parvula HOM05D006097 ORTHO05D008538 3.4e-229 798.5 588 65.8
C04p36530 Brassica napus HOM05D006097 ORTHO05D008538 5.9e-229 797.7 588 65.6
BcaB02g08396 Brassica carinata HOM05D006097 ORTHO05D008538 8.5e-228 793.9 588 65.5
BcaC02g09793 Brassica carinata HOM05D006097 ORTHO05D008538 8.5e-228 793.9 588 65.3
SalBow6G4726 Salvia bowleyana HOM05D006097 ORTHO05D008538 8.5e-228 793.9 556 68.5
A04p04190 Brassica napus HOM05D006097 ORTHO05D008538 4.2e-227 791.6 588 65.5
Cc02_g30220 Coffea canephora HOM05D006097 ORTHO05D008538 1.2e-226 790.0 587 66.8
AUR62032650 Chenopodium quinoa HOM05D006097 ORTHO05D008538 3.6e-226 788.5 547 68.0
BolC4t25143H Brassica oleracea HOM05D006097 ORTHO05D008538 1.0e-225 786.9 606 63.7
CSS0004732 Camellia sinensis var. sinensis HOM05D006097 ORTHO05D008538 1.4e-225 786.6 589 68.9
Carub.0005s2263 Capsella rubella HOM05D006097 ORTHO05D008538 3.9e-225 785.0 588 64.8
AL5G37140 Arabidopsis lyrata HOM05D006097 ORTHO05D008538 8.8e-225 783.9 588 65.5
ClCG05G026810 Citrullus lanatus HOM05D006097 ORTHO05D008538 7.4e-224 780.8 546 69.8
Aa31LG10G10820 Aethionema arabicum HOM05D006097 ORTHO05D008538 2.4e-222 775.8 594 64.8
ATR0745G019 Amborella trichopoda HOM05D006097 ORTHO05D008538 7.0e-222 774.2 538 68.2
Aqoxy2G00367 Aquilegia oxysepala HOM05D006097 ORTHO05D008538 7.0e-222 774.2 513 72.5
Eucgr.G03235 Eucalyptus grandis HOM05D006097 ORTHO05D008538 7.0e-222 774.2 588 66.5
AUR62026861 Chenopodium quinoa HOM05D006097 ORTHO05D008538 6.5e-220 767.7 566 65.7
CARHR165960 Cardamine hirsuta HOM05D006097 ORTHO05D008538 5.7e-216 754.6 577 64.6
EL10Ac2g02801 Beta vulgaris HOM05D006097 ORTHO05D008538 9.1e-214 747.3 669 58.1
Hma1.2p1_1627F.1_g294440 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 9.4e-211 737.3 463 76.7
QL04p017846 Quercus lobata HOM05D006097 ORTHO05D008538 8.0e-210 734.2 402 90.0
Phvul.011G206500 Phaseolus vulgaris HOM05D006097 ORTHO05D008538 2.6e-208 729.2 521 68.9
PGSC0003DMG400025223 Solanum tuberosum HOM05D006097 ORTHO05D008538 7.7e-205 717.6 460 73.5
Os01g0952700 Oryza sativa ssp. japonica HOM05D006097 ORTHO05D008538 2.9e-204 715.7 548 61.1
Solyc08g014470.4 Solanum lycopersicum HOM05D006097 ORTHO05D008538 2.3e-201 706.1 460 72.6
HPP92_013975 Vanilla planifolia HOM05D006097 ORTHO05D008538 3.7e-199 698.7 586 58.2
Sc07g0002170 Simmondsia chinensis HOM05D006097 ORTHO05D008538 4.8e-199 698.4 462 71.2
arahy.Tifrunner.gnm1.ann1.RMFD7W Arachis hypogaea HOM05D006097 ORTHO05D008538 4.1e-198 695.3 616 59.1
SEGI_19069 Sequoiadendron giganteum HOM05D006097 ORTHO05D008538 7.2e-195 684.5 535 60.7
DCAR_031244 Daucus carota HOM05D006097 ORTHO05D008538 1.2e-189 667.2 460 69.6
MELO3C012474.2 Cucumis melo HOM05D006097 ORTHO05D008538 1.6e-189 666.8 441 72.3
Hma1.2p1_1627F.1_g294450 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 2.5e-187 659.4 463 70.4
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 2.2e-183 646.4 540 62.4
MBI19_g07612_MAGBIO Magnolia biondii HOM05D006097 ORTHO05D008538 1.1e-182 644.0 532 61.7
Sed0002543 Sechium edule HOM05D006097 ORTHO05D008538 5.4e-182 641.7 549 60.7
AT3G55850 Arabidopsis thaliana HOM05D006097 ORTHO05D008538 5.6e-179 631.7 463 67.6
unitig_52.g17390 Utricularia gibba HOM05D006097 ORTHO05D008538 7.8e-173 611.3 511 62.0
TAR623G0406 Trochodendron aralioides HOM05D006097 ORTHO05D008538 1.4e-161 573.9 350 79.7
Mapoly0021s0162 Marchantia polymorpha HOM05D006097 ORTHO05D008538 1.8e-161 573.5 552 50.9
SMO367G1089 Selaginella moellendorffii HOM05D006097 ORTHO05D008538 6.0e-157 558.5 537 51.0
Glyma.15G235400 Glycine max HOM05D006097 ORTHO05D008538 2.0e-152 543.5 523 54.9
AUR62037188 Chenopodium quinoa HOM05D006097 ORTHO05D008538 1.0e-148 531.2 395 65.3
AagrBONN_evm.TU.Sc2ySwM_340.253 Anthoceros agrestis HOM05D006097 ORTHO05D008538 3.0e-148 529.6 548 48.0
Pp3c20_1490 Physcomitrium patens HOM05D006097 ORTHO05D008538 3.3e-139 499.6 563 46.4
Oeu048573.1 Olea europaea HOM05D006097 ORTHO05D008538 1.6e-138 497.3 371 65.5
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 2.1e-133 480.3 539 49.0
Ca_26912_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 2.9e-127 459.9 296 71.6
CDE06G1230 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 9.7e-123 444.9 355 60.3
vmacro12697 Vaccinium macrocarpon HOM05D006097 ORTHO05D008538 3.7e-114 416.4 266 74.8
VMungo1127G1698 Vigna mungo HOM05D006097 ORTHO05D008538 3.7e-114 416.4 292 71.6
Thhalv10010899m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 3.4e-112 409.8 322 61.2
FAN10G0529 Fragaria x ananassa HOM05D006097 ORTHO05D008538 2.2e-111 407.1 693 38.5
Lj9A654G51 Lonicera japonica HOM05D006097 ORTHO05D008538 3.1e-105 386.7 238 77.3
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 1.8e-92 344.4 510 41.0
MCO06G284 Micromonas commoda HOM05D006097 ORTHO05D008538 2.0e-91 340.9 568 39.1
Zm00001eb140700 Zea mays HOM05D006097 ORTHO05D008538 2.4e-89 334.0 249 63.9
VMungo1127G1548 Vigna mungo HOM05D006097 ORTHO05D008538 9.8e-75 285.4 192 71.4
TAR623G0702 Trochodendron aralioides HOM05D006097 ORTHO05D008538 5.9e-72 276.2 214 65.0
Cre06.g279350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 1.5e-70 271.6 471 35.5
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 2.6e-67 260.8 497 36.2
QL04p017840 Quercus lobata HOM05D006097 ORTHO05D008538 1.6e-61 241.5 123 93.5
Lj9A654T55 Lonicera japonica HOM05D006097 ORTHO05D008538 4.9e-58 229.9 139 75.5
Cre07.g313350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 1.6e-56 224.9 610 28.9
Pp3s32_630 Physcomitrium patens HOM05D006097 ORTHO05D008538 6.0e-56 223.0 519 31.8
PRCOL_00006109 Prasinoderma coloniale HOM05D006097 ORTHO05D008538 7.8e-48 196.1 397 34.8
Ca_03883_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 7.6e-35 152.9 96 75.0
Nn2g16009 Nelumbo nucifera HOM05D006097 ORTHO05D008538 2.5e-30 137.9 84 77.4
CDE06G0927 Ceratophyllum demersum HOM05D006097 ORTHO05D020391 4.3e-30 137.1 148 51.4
Medtr1224s0010 Medicago truncatula HOM05D006097 ORTHO05D008538 1.0e-23 115.9 567 25.0
DCAR_031243 Daucus carota HOM05D006097 ORTHO05D020391 1.1e-22 112.5 128 49.2
CDE06G2151 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 1.9e-22 111.7 82 64.6
SMO197G0087 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 2.6e-19 101.3 170 39.4
Carub.0002s2671 Capsella rubella HOM05D006097 ORTHO05D008538 7.6e-19 99.8 57 73.7
SMO274G0019 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 2.9e-18 97.8 110 46.4
RcHm_v2.0_Chr6g0254811 Rosa chinensis HOM05D006097 ORTHO05D020391 1.1e-17 95.9 57 75.4
SMO005G0015 Selaginella moellendorffii HOM05D006097 ORTHO05D011308 2.5e-17 94.7 105 46.7
SMO125G0001 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 3.2e-17 94.4 94 48.9
SMO212G0005 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 5.5e-17 93.6 115 44.3
SEGI_33421 Sequoiadendron giganteum HOM05D006097 ORTHO05D020391 9.3e-17 92.8 74 62.2
SMO009G0029 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 1.6e-16 92.0 118 43.2
CDE06G1678 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 2.9e-10 71.2 53 58.5
Nn313s46297 Nelumbo nucifera HOM05D006097 ORTHO05D008538 3.8e-10 70.9 45 77.8
Hma1.2p1_0269F.1_g107740 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 2.7e-08 64.7 41 70.7
Hma1.2p1_3244F.1_g334325 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 2.7e-08 64.7 41 70.7
Haze_01792 Corylus avellana HOM05D000242 ORTHO05D000700 3.0e-07 61.2 35 80.0
BolC8t50740H Brassica oleracea HOM05D035890 ORTHO05D033370 6.7e-07 60.1 42 71.4


User provided reference genes

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