Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p017846 Quercus lobata HOM05D006097 ORTHO05D008538 1.2e-233 812.8 405 100.0
QL04p017855 Quercus lobata HOM05D006097 ORTHO05D008538 1.2e-209 733.0 402 90.0
Haze_03039 Corylus avellana HOM05D006097 ORTHO05D008538 3.7e-190 668.3 400 81.5
CiPaw.14G007600 Carya illinoinensis HOM05D006097 ORTHO05D008538 1.4e-189 666.4 401 80.5
Cfa010917 Carpinus fangiana HOM05D006097 ORTHO05D008538 2.2e-187 659.1 400 81.0
MD07G1040200 Malus domestica HOM05D006097 ORTHO05D008538 4.8e-182 641.3 398 76.9
GSVIVG01013488001 Vitis vinifera HOM05D006097 ORTHO05D008538 3.5e-180 635.2 399 76.7
Prupe.2G036100 Prunus persica HOM05D006097 ORTHO05D008538 3.8e-179 631.7 402 76.1
Atru.chr7.628 Acer truncatum HOM05D006097 ORTHO05D008538 3.2e-178 628.6 397 76.1
Dinv22036 Davidia involucrata HOM05D006097 ORTHO05D008538 9.5e-178 627.1 401 75.3
Sabra03G0146400 Salix brachista HOM05D006097 ORTHO05D008538 8.0e-177 624.0 402 73.4
FAN01G0546 Fragaria x ananassa HOM05D006097 ORTHO05D008538 2.3e-176 622.5 398 74.6
Ciclev10004623m.g Citrus clementina HOM05D006097 ORTHO05D008538 5.2e-176 621.3 398 75.4
Potri.003G196300 Populus trichocarpa HOM05D006097 ORTHO05D008538 6.8e-176 620.9 402 73.9
CSS0004732 Camellia sinensis var. sinensis HOM05D006097 ORTHO05D008538 1.5e-175 619.8 401 74.6
RcHm_v2.0_Chr1g0324291 Rosa chinensis HOM05D006097 ORTHO05D008538 1.5e-175 619.8 402 75.1
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 2.6e-175 619.0 398 73.9
Actinidia21518 Actinidia chinensis HOM05D006097 ORTHO05D008538 3.4e-175 618.6 401 74.3
Gohir.D06G184900 Gossypium hirsutum HOM05D006097 ORTHO05D008538 3.4e-175 618.6 400 74.5
Thecc.10G154600 Theobroma cacao HOM05D006097 ORTHO05D008538 7.5e-175 617.5 400 74.2
Gohir.A06G175000 Gossypium hirsutum HOM05D006097 ORTHO05D008538 2.8e-174 615.5 400 74.0
Hund13358 Selenicereus undatus HOM05D006097 ORTHO05D008538 3.7e-174 615.1 396 73.7
COL.COLO4_20657 Corchorus olitorius HOM05D006097 ORTHO05D008538 6.3e-174 614.4 400 73.8
Gorai.010G216200 Gossypium raimondii HOM05D006097 ORTHO05D008538 8.3e-174 614.0 402 74.1
MELO3C012474.2 Cucumis melo HOM05D006097 ORTHO05D008538 5.4e-173 611.3 402 72.1
Manes.04G159300 Manihot esculenta HOM05D006097 ORTHO05D008538 7.0e-173 610.9 400 73.2
Duzib114G0946 Durio zibethinus HOM05D006097 ORTHO05D008538 1.3e-171 606.7 400 73.0
THA.LOC104826726 Tarenaya hassleriana HOM05D006097 ORTHO05D008538 2.5e-170 602.4 397 71.3
Medtr3g014750 Medicago truncatula HOM05D006097 ORTHO05D008538 3.3e-170 602.1 401 71.8
Lj3g0013868 Lotus japonicus HOM05D006097 ORTHO05D008538 1.0e-168 597.0 395 72.7
PSO339G1331 Papaver somniferum HOM05D006097 ORTHO05D008538 1.2e-167 593.6 402 70.9
Glyma.13G197200 Glycine max HOM05D006097 ORTHO05D008538 1.5e-167 593.2 395 72.2
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 2.0e-167 592.8 395 71.4
Nn2g14836 Nelumbo nucifera HOM05D006097 ORTHO05D008538 2.6e-167 592.4 398 71.6
TPR.G17806 Trifolium pratense HOM05D006097 ORTHO05D008538 3.4e-167 592.0 401 70.8
CsaV3_5G036770 Cucumis sativus L. HOM05D006097 ORTHO05D008538 7.5e-167 590.9 402 70.1
Peaxi162Scf00767g00518 Petunia axillaris HOM05D006097 ORTHO05D008538 7.5e-167 590.9 401 71.3
CANSAT56G2143 Cannabis sativa HOM05D006097 ORTHO05D008538 9.8e-167 590.5 401 69.1
Migut.N01845 Erythranthe guttata HOM05D006097 ORTHO05D008538 9.8e-167 590.5 395 71.6
Lalb_Chr19g0132421 Lupinus albus HOM05D006097 ORTHO05D008538 1.3e-166 590.1 395 70.4
Psat5g221440 Pisum sativum HOM05D006097 ORTHO05D008538 1.7e-166 589.7 401 69.1
SGA_v2.0_scaffold232G43504 Striga asiatica HOM05D006097 ORTHO05D008538 2.9e-166 589.0 395 71.6
HanXRQChr04g0113861 Helianthus annuus HOM05D006097 ORTHO05D008538 1.2e-164 583.6 401 69.8
Phvul.011G206500 Phaseolus vulgaris HOM05D006097 ORTHO05D008538 1.6e-164 583.2 396 71.2
ECA236G3136 Erigeron canadensis HOM05D006097 ORTHO05D008538 2.7e-164 582.4 397 68.8
PGR031G1965 Punica granatum HOM05D006097 ORTHO05D008538 2.7e-164 582.4 399 71.4
AUR62032650 Chenopodium quinoa HOM05D006097 ORTHO05D008538 4.6e-164 581.6 395 69.4
Ah.12g062830 Amaranthus hybridus HOM05D006097 ORTHO05D008538 1.3e-163 580.1 395 70.4
Nitab4.5_0001621g0010 Nicotiana tabacum HOM05D006097 ORTHO05D008538 2.3e-163 579.3 400 70.0
SalBow6G4726 Salvia bowleyana HOM05D006097 ORTHO05D008538 6.6e-163 577.8 395 69.9
CAN.G176.2 Capsicum annuum HOM05D006097 ORTHO05D008538 1.5e-162 576.6 401 69.1
BraA04t16135Z Brassica rapa HOM05D006097 ORTHO05D008538 9.5e-162 573.9 397 68.0
C04p36530 Brassica napus HOM05D006097 ORTHO05D008538 4.7e-161 571.6 397 67.5
BolC4t25143H Brassica oleracea HOM05D006097 ORTHO05D008538 4.7e-161 571.6 397 67.5
Sp5g06630 Schrenkiella parvula HOM05D006097 ORTHO05D008538 4.7e-161 571.6 397 67.8
BcaB02g08396 Brassica carinata HOM05D006097 ORTHO05D008538 1.4e-160 570.1 399 67.4
BcaC02g09793 Brassica carinata HOM05D006097 ORTHO05D008538 1.4e-160 570.1 397 67.3
Sopen08g005450 Solanum pennellii HOM05D006097 ORTHO05D008538 1.4e-160 570.1 401 69.3
Aa31LG10G10820 Aethionema arabicum HOM05D006097 ORTHO05D008538 1.2e-159 567.0 397 68.0
AL5G37140 Arabidopsis lyrata HOM05D006097 ORTHO05D008538 2.0e-159 566.2 399 67.2
A04p04190 Brassica napus HOM05D006097 ORTHO05D008538 2.6e-159 565.8 397 67.3
Carub.0005s2263 Capsella rubella HOM05D006097 ORTHO05D008538 2.6e-159 565.8 399 66.7
Thhalv10010237m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 4.4e-159 565.1 399 67.2
arahy.Tifrunner.gnm1.ann1.HF4B4K Arachis hypogaea HOM05D006097 ORTHO05D008538 1.3e-158 563.5 452 62.6
Cc02_g30220 Coffea canephora HOM05D006097 ORTHO05D008538 6.4e-158 561.2 395 68.4
ATR0745G019 Amborella trichopoda HOM05D006097 ORTHO05D008538 1.9e-157 559.7 398 65.8
AUR62026861 Chenopodium quinoa HOM05D006097 ORTHO05D008538 7.8e-156 554.3 395 66.8
ClCG05G026810 Citrullus lanatus HOM05D006097 ORTHO05D008538 1.0e-155 553.9 413 65.6
Aqoxy2G00367 Aquilegia oxysepala HOM05D006097 ORTHO05D008538 1.7e-155 553.1 373 70.2
CARHR165960 Cardamine hirsuta HOM05D006097 ORTHO05D008538 4.0e-152 542.0 436 60.8
Os01g0952700 Oryza sativa ssp. japonica HOM05D006097 ORTHO05D008538 1.2e-151 540.4 395 62.3
EL10Ac2g02801 Beta vulgaris HOM05D006097 ORTHO05D008538 2.2e-150 536.2 476 57.6
Eucgr.G03235 Eucalyptus grandis HOM05D006097 ORTHO05D008538 5.4e-149 531.6 398 65.8
HPP92_013975 Vanilla planifolia HOM05D006097 ORTHO05D008538 3.9e-147 525.4 395 62.0
Hma1.2p1_1627F.1_g294440 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 6.4e-142 508.1 322 75.2
SEGI_19069 Sequoiadendron giganteum HOM05D006097 ORTHO05D008538 1.2e-140 503.8 396 59.8
Sed0002543 Sechium edule HOM05D006097 ORTHO05D008538 9.6e-138 494.2 395 62.8
PGSC0003DMG400025223 Solanum tuberosum HOM05D006097 ORTHO05D008538 5.8e-135 485.0 321 71.0
Oeu048573.1 Olea europaea HOM05D006097 ORTHO05D008538 2.2e-134 483.0 322 69.6
Sc07g0002170 Simmondsia chinensis HOM05D006097 ORTHO05D008538 8.4e-134 481.1 322 69.3
Solyc08g014470.4 Solanum lycopersicum HOM05D006097 ORTHO05D008538 1.0e-131 474.2 321 70.4
DCAR_031244 Daucus carota HOM05D006097 ORTHO05D008538 4.8e-129 465.3 321 69.2
arahy.Tifrunner.gnm1.ann1.RMFD7W Arachis hypogaea HOM05D006097 ORTHO05D008538 1.2e-127 460.7 440 55.9
Ca_26912_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 1.6e-124 450.3 296 69.9
MBI19_g07612_MAGBIO Magnolia biondii HOM05D006097 ORTHO05D008538 2.3e-123 446.4 348 63.8
AT3G55850 Arabidopsis thaliana HOM05D006097 ORTHO05D008538 1.1e-120 437.6 297 69.4
SMO367G1089 Selaginella moellendorffii HOM05D006097 ORTHO05D008538 3.1e-120 436.0 395 51.4
Mapoly0021s0162 Marchantia polymorpha HOM05D006097 ORTHO05D008538 2.6e-119 433.0 396 51.8
Hma1.2p1_1627F.1_g294450 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 9.9e-119 431.0 322 66.5
unitig_52.g17390 Utricularia gibba HOM05D006097 ORTHO05D008538 5.1e-115 418.7 364 61.0
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 1.1e-114 417.5 396 57.1
AagrBONN_evm.TU.Sc2ySwM_340.253 Anthoceros agrestis HOM05D006097 ORTHO05D008538 2.5e-114 416.4 396 49.2
Glyma.15G235400 Glycine max HOM05D006097 ORTHO05D008538 4.2e-109 399.1 305 64.6
Pp3c20_1490 Physcomitrium patens HOM05D006097 ORTHO05D008538 1.2e-108 397.5 395 49.6
Thhalv10010899m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 9.7e-106 387.9 272 66.2
FAN10G0529 Fragaria x ananassa HOM05D006097 ORTHO05D008538 1.8e-99 367.1 387 52.7
CDE06G1230 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 2.3e-91 340.1 294 55.4
AUR62037188 Chenopodium quinoa HOM05D006097 ORTHO05D008538 2.3e-91 340.1 256 64.1
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 6.7e-91 338.6 398 47.7
TAR623G0406 Trochodendron aralioides HOM05D006097 ORTHO05D008538 1.0e-86 324.7 209 74.6
VMungo1127G1548 Vigna mungo HOM05D006097 ORTHO05D008538 7.0e-72 275.4 175 73.1
TAR623G0702 Trochodendron aralioides HOM05D006097 ORTHO05D008538 3.6e-68 263.1 168 72.6
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 2.3e-67 260.4 400 39.8
MCO06G284 Micromonas commoda HOM05D006097 ORTHO05D008538 4.1e-64 249.6 423 38.3
Lj9A654G51 Lonicera japonica HOM05D006097 ORTHO05D008538 1.1e-61 241.5 156 74.4
Cre06.g279350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 1.4e-59 234.6 362 35.6
Lj9A654T55 Lonicera japonica HOM05D006097 ORTHO05D008538 4.4e-58 229.6 140 75.0
vmacro12697 Vaccinium macrocarpon HOM05D006097 ORTHO05D008538 1.3e-49 201.4 126 77.0
VMungo1127G1698 Vigna mungo HOM05D006097 ORTHO05D008538 1.3e-46 191.4 152 63.8
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 1.7e-46 191.0 396 33.8
Cre07.g313350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 1.2e-42 178.3 459 28.8
Pp3s32_630 Physcomitrium patens HOM05D006097 ORTHO05D008538 4.1e-40 169.9 399 30.6
PRCOL_00006109 Prasinoderma coloniale HOM05D006097 ORTHO05D008538 2.1e-36 157.5 312 34.3
Zm00001eb140700 Zea mays HOM05D006097 ORTHO05D008538 2.8e-36 157.1 109 67.9
CDE06G0927 Ceratophyllum demersum HOM05D006097 ORTHO05D020391 5.2e-27 126.3 101 61.4
CDE06G2151 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 1.5e-21 108.2 82 63.4
DCAR_031243 Daucus carota HOM05D006097 ORTHO05D020391 1.9e-21 107.8 75 70.7
Carub.0002s2671 Capsella rubella HOM05D006097 ORTHO05D008538 1.5e-18 98.2 57 71.9
SEGI_33421 Sequoiadendron giganteum HOM05D006097 ORTHO05D020391 2.9e-17 94.0 75 62.7
RcHm_v2.0_Chr6g0254811 Rosa chinensis HOM05D006097 ORTHO05D020391 4.2e-16 90.1 57 70.2
SMO005G0015 Selaginella moellendorffii HOM05D006097 ORTHO05D011308 2.8e-12 77.4 89 42.7
CDE06G1678 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 1.7e-09 68.2 54 57.4
Medtr1224s0010 Medicago truncatula HOM05D006097 ORTHO05D008538 2.2e-09 67.8 334 23.7
Hma1.2p1_0269F.1_g107740 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 3.2e-08 63.9 41 68.3
Hma1.2p1_3244F.1_g334325 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 3.2e-08 63.9 41 68.3
Haze_01792 Corylus avellana HOM05D000242 ORTHO05D000700 3.5e-07 60.5 35 77.1


User provided reference genes

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