Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p017840 Quercus lobata HOM05D006097 ORTHO05D008538 5.1e-66 254.2 124 100.0
QL04p017855 Quercus lobata HOM05D006097 ORTHO05D008538 7.6e-62 240.4 123 93.5
CiPaw.14G007600 Carya illinoinensis HOM05D006097 ORTHO05D008538 5.1e-58 227.6 124 87.1
Haze_03039 Corylus avellana HOM05D006097 ORTHO05D008538 1.5e-57 226.1 124 84.7
GSVIVG01013488001 Vitis vinifera HOM05D006097 ORTHO05D008538 6.9e-55 217.2 124 83.1
Prupe.2G036100 Prunus persica HOM05D006097 ORTHO05D008538 5.8e-54 214.2 124 83.9
TAR623G0406 Trochodendron aralioides HOM05D006097 ORTHO05D008538 2.9e-53 211.8 124 80.6
Dinv22036 Davidia involucrata HOM05D006097 ORTHO05D008538 5.0e-53 211.1 124 78.2
Lj3g0013868 Lotus japonicus HOM05D006097 ORTHO05D008538 5.5e-52 207.6 123 79.7
Ciclev10004623m.g Citrus clementina HOM05D006097 ORTHO05D008538 1.2e-51 206.5 124 79.8
COL.COLO4_20657 Corchorus olitorius HOM05D006097 ORTHO05D008538 1.6e-51 206.1 124 78.2
Actinidia21518 Actinidia chinensis HOM05D006097 ORTHO05D008538 3.5e-51 204.9 123 77.2
Cfa010917 Carpinus fangiana HOM05D006097 ORTHO05D008538 3.5e-51 204.9 155 66.5
CsaV3_5G036770 Cucumis sativus L. HOM05D006097 ORTHO05D008538 3.5e-51 204.9 122 81.1
TPR.G17806 Trifolium pratense HOM05D006097 ORTHO05D008538 4.6e-51 204.5 123 78.0
Thhalv10010237m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 6.1e-51 204.1 123 79.7
Glyma.13G197200 Glycine max HOM05D006097 ORTHO05D008538 1.3e-50 203.0 123 77.2
Thecc.10G154600 Theobroma cacao HOM05D006097 ORTHO05D008538 3.9e-50 201.4 124 77.4
RcHm_v2.0_Chr1g0324291 Rosa chinensis HOM05D006097 ORTHO05D008538 6.7e-50 200.7 124 77.4
VMungo1127G1698 Vigna mungo HOM05D006097 ORTHO05D008538 8.7e-50 200.3 123 77.2
Duzib114G0946 Durio zibethinus HOM05D006097 ORTHO05D008538 1.5e-49 199.5 124 77.4
Atru.chr7.628 Acer truncatum HOM05D006097 ORTHO05D008538 1.9e-49 199.1 124 78.2
CANSAT56G2143 Cannabis sativa HOM05D006097 ORTHO05D008538 4.3e-49 198.0 123 74.8
Lalb_Chr19g0132421 Lupinus albus HOM05D006097 ORTHO05D008538 5.7e-49 197.6 123 74.8
Nn2g14836 Nelumbo nucifera HOM05D006097 ORTHO05D008538 7.4e-49 197.2 122 77.0
arahy.Tifrunner.gnm1.ann1.RMFD7W Arachis hypogaea HOM05D006097 ORTHO05D008538 9.7e-49 196.8 123 74.0
BraA04t16135Z Brassica rapa HOM05D006097 ORTHO05D008538 1.3e-48 196.4 123 75.6
Gohir.D06G184900 Gossypium hirsutum HOM05D006097 ORTHO05D008538 2.2e-48 195.7 124 75.8
Gorai.010G216200 Gossypium raimondii HOM05D006097 ORTHO05D008538 2.2e-48 195.7 124 75.8
arahy.Tifrunner.gnm1.ann1.HF4B4K Arachis hypogaea HOM05D006097 ORTHO05D008538 3.7e-48 194.9 123 74.0
C04p36530 Brassica napus HOM05D006097 ORTHO05D008538 3.7e-48 194.9 123 73.2
Medtr3g014750 Medicago truncatula HOM05D006097 ORTHO05D008538 3.7e-48 194.9 123 74.8
Hma1.2p1_1627F.1_g294440 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 4.8e-48 194.5 125 74.4
Hma1.2p1_1627F.1_g294450 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 4.8e-48 194.5 125 74.4
Manes.04G159300 Manihot esculenta HOM05D006097 ORTHO05D008538 4.8e-48 194.5 124 74.2
MD07G1040200 Malus domestica HOM05D006097 ORTHO05D008538 6.3e-48 194.1 124 75.8
Aqoxy2G00367 Aquilegia oxysepala HOM05D006097 ORTHO05D008538 8.2e-48 193.7 123 77.2
FAN01G0546 Fragaria x ananassa HOM05D006097 ORTHO05D008538 8.2e-48 193.7 124 74.2
THA.LOC104826726 Tarenaya hassleriana HOM05D006097 ORTHO05D008538 8.2e-48 193.7 123 74.8
ClCG05G026810 Citrullus lanatus HOM05D006097 ORTHO05D008538 1.1e-47 193.4 117 80.3
Ah.12g062830 Amaranthus hybridus HOM05D006097 ORTHO05D008538 1.8e-47 192.6 121 73.6
EL10Ac2g02801 Beta vulgaris HOM05D006097 ORTHO05D008538 1.8e-47 192.6 122 73.8
BcaC02g09793 Brassica carinata HOM05D006097 ORTHO05D008538 1.8e-47 192.6 123 72.4
A04p04190 Brassica napus HOM05D006097 ORTHO05D008538 2.4e-47 192.2 123 72.4
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 2.4e-47 192.2 123 72.4
Sp5g06630 Schrenkiella parvula HOM05D006097 ORTHO05D008538 3.1e-47 191.8 123 74.0
Psat5g221440 Pisum sativum HOM05D006097 ORTHO05D008538 4.1e-47 191.4 123 74.0
PGR031G1965 Punica granatum HOM05D006097 ORTHO05D008538 4.1e-47 191.4 123 74.8
BcaB02g08396 Brassica carinata HOM05D006097 ORTHO05D008538 5.3e-47 191.0 123 73.2
Gohir.A06G175000 Gossypium hirsutum HOM05D006097 ORTHO05D008538 5.3e-47 191.0 124 74.2
Peaxi162Scf00767g00518 Petunia axillaris HOM05D006097 ORTHO05D008538 5.3e-47 191.0 122 73.8
Sc07g0002170 Simmondsia chinensis HOM05D006097 ORTHO05D008538 9.0e-47 190.3 122 74.6
vmacro12697 Vaccinium macrocarpon HOM05D006097 ORTHO05D008538 9.0e-47 190.3 124 70.2
Eucgr.G03235 Eucalyptus grandis HOM05D006097 ORTHO05D008538 5.9e-46 187.6 123 72.4
PGSC0003DMG400025223 Solanum tuberosum HOM05D006097 ORTHO05D008538 5.9e-46 187.6 122 72.1
Sopen08g005450 Solanum pennellii HOM05D006097 ORTHO05D008538 1.0e-45 186.8 122 72.1
SGA_v2.0_scaffold232G43504 Striga asiatica HOM05D006097 ORTHO05D008538 1.0e-45 186.8 123 71.5
AUR62026861 Chenopodium quinoa HOM05D006097 ORTHO05D008538 1.3e-45 186.4 121 71.1
Cc02_g30220 Coffea canephora HOM05D006097 ORTHO05D008538 1.3e-45 186.4 124 68.5
Nitab4.5_0001621g0010 Nicotiana tabacum HOM05D006097 ORTHO05D008538 1.3e-45 186.4 122 71.3
PSO339G1331 Papaver somniferum HOM05D006097 ORTHO05D008538 1.3e-45 186.4 124 70.2
Migut.N01845 Erythranthe guttata HOM05D006097 ORTHO05D008538 1.7e-45 186.0 123 67.5
AUR62032650 Chenopodium quinoa HOM05D006097 ORTHO05D008538 2.9e-45 185.3 121 70.2
AL5G37140 Arabidopsis lyrata HOM05D006097 ORTHO05D008538 3.8e-45 184.9 123 73.2
Carub.0005s2263 Capsella rubella HOM05D006097 ORTHO05D008538 5.0e-45 184.5 123 71.5
Potri.003G196300 Populus trichocarpa HOM05D006097 ORTHO05D008538 5.0e-45 184.5 124 73.4
CAN.G176.2 Capsicum annuum HOM05D006097 ORTHO05D008538 6.5e-45 184.1 122 71.3
Hund13358 Selenicereus undatus HOM05D006097 ORTHO05D008538 6.5e-45 184.1 123 72.4
Solyc08g014470.4 Solanum lycopersicum HOM05D006097 ORTHO05D008538 6.5e-45 184.1 122 70.5
BolC4t25143H Brassica oleracea HOM05D006097 ORTHO05D008538 8.5e-45 183.7 141 63.8
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 8.5e-45 183.7 117 75.2
ECA236G3136 Erigeron canadensis HOM05D006097 ORTHO05D008538 1.9e-44 182.6 124 68.5
HanXRQChr04g0113861 Helianthus annuus HOM05D006097 ORTHO05D008538 1.6e-43 179.5 124 69.4
AUR62037188 Chenopodium quinoa HOM05D006097 ORTHO05D008538 2.1e-43 179.1 121 68.6
CARHR165960 Cardamine hirsuta HOM05D006097 ORTHO05D008538 2.7e-43 178.7 123 70.7
Aa31LG10G10820 Aethionema arabicum HOM05D006097 ORTHO05D008538 3.6e-43 178.3 122 71.3
ATR0745G019 Amborella trichopoda HOM05D006097 ORTHO05D008538 3.0e-42 175.3 123 69.1
AT3G55850 Arabidopsis thaliana HOM05D006097 ORTHO05D008538 7.4e-41 170.6 149 61.1
DCAR_031244 Daucus carota HOM05D006097 ORTHO05D008538 9.7e-41 170.2 123 64.2
unitig_52.g17390 Utricularia gibba HOM05D006097 ORTHO05D008538 9.7e-41 170.2 122 63.1
SalBow6G4726 Salvia bowleyana HOM05D006097 ORTHO05D008538 3.7e-40 168.3 145 56.6
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 3.1e-39 165.2 125 63.2
Sabra03G0146400 Salix brachista HOM05D006097 ORTHO05D008538 4.1e-39 164.9 166 54.8
Os01g0952700 Oryza sativa ssp. japonica HOM05D006097 ORTHO05D008538 1.0e-37 160.2 124 62.1
Zm00001eb140700 Zea mays HOM05D006097 ORTHO05D008538 1.3e-37 159.8 124 58.9
MBI19_g07612_MAGBIO Magnolia biondii HOM05D006097 ORTHO05D008538 3.8e-37 158.3 166 52.4
HPP92_013975 Vanilla planifolia HOM05D006097 ORTHO05D008538 8.5e-37 157.1 122 62.3
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 3.2e-36 155.2 96 75.0
Ca_03883_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 6.1e-35 151.0 96 75.0
SEGI_19069 Sequoiadendron giganteum HOM05D006097 ORTHO05D008538 1.5e-33 146.4 122 57.4
Sed0002543 Sechium edule HOM05D006097 ORTHO05D008538 3.6e-27 125.2 131 54.2
CSS0004732 Camellia sinensis var. sinensis HOM05D006097 ORTHO05D008538 1.0e-26 123.6 124 55.6
Glyma.15G235400 Glycine max HOM05D006097 ORTHO05D008538 6.3e-24 114.4 67 73.1
Mapoly0021s0162 Marchantia polymorpha HOM05D006097 ORTHO05D008538 6.3e-24 114.4 122 48.4
Nn2g16009 Nelumbo nucifera HOM05D006097 ORTHO05D008538 7.0e-23 110.9 65 76.9
Phvul.011G206500 Phaseolus vulgaris HOM05D006097 ORTHO05D008538 7.0e-23 110.9 66 71.2
Lj9A654G51 Lonicera japonica HOM05D006097 ORTHO05D008538 3.5e-22 108.6 66 74.2
SMO367G1089 Selaginella moellendorffii HOM05D006097 ORTHO05D008538 1.6e-19 99.8 125 41.6
AagrBONN_evm.TU.Sc2ySwM_340.253 Anthoceros agrestis HOM05D006097 ORTHO05D008538 1.0e-18 97.1 118 45.8
Pp3c20_1490 Physcomitrium patens HOM05D006097 ORTHO05D008538 5.2e-18 94.7 122 41.8
SMO125G0001 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 8.3e-16 87.4 97 45.4
FAN10G0529 Fragaria x ananassa HOM05D006097 ORTHO05D008538 1.4e-15 86.7 56 69.6
SMO009G0029 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 3.1e-15 85.5 74 52.7
SMO212G0005 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 4.1e-15 85.1 93 45.2
SMO197G0087 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 5.4e-15 84.7 83 45.8
SMO274G0019 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 1.3e-13 80.1 90 41.1
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 5.0e-13 78.2 96 41.7
CDE06G1230 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 2.1e-11 72.8 43 76.7
MCO06G284 Micromonas commoda HOM05D006097 ORTHO05D008538 1.0e-10 70.5 128 35.2
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 5.4e-07 58.2 84 40.5
Medtr1224s0010 Medicago truncatula HOM05D006097 ORTHO05D008538 1.2e-06 57.0 100 40.0


User provided reference genes

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