Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p010120 Quercus lobata HOM05D002214 ORTHO05D007367 1.7e-261 905.6 499 100.0
QL04p010068 Quercus lobata HOM05D002214 ORTHO05D007367 6.4e-184 647.9 558 67.7
QL04p010150 Quercus lobata HOM05D002214 ORTHO05D007367 9.4e-95 351.7 382 56.0
QL04p010195 Quercus lobata HOM05D002214 ORTHO05D007367 1.2e-70 271.6 219 67.6
Cfa010812 Carpinus fangiana HOM05D002214 ORTHO05D007367 6.2e-70 269.2 203 68.0
CiPaw.14G003400 Carya illinoinensis HOM05D002214 ORTHO05D007367 2.0e-68 264.2 203 67.5
GSVIVG01032215001 Vitis vinifera HOM05D002214 ORTHO05D007367 3.5e-65 253.4 248 54.4
FvH4_7g01770 Fragaria vesca HOM05D002214 ORTHO05D007367 3.9e-64 250.0 203 63.5
Potri.009G056500 Populus trichocarpa HOM05D002214 ORTHO05D007367 5.1e-64 249.6 203 62.6
RcHm_v2.0_Chr1g0318361 Rosa chinensis HOM05D002214 ORTHO05D007367 5.1e-64 249.6 205 63.4
FAN03G2729 Fragaria x ananassa HOM05D002214 ORTHO05D007367 8.6e-64 248.8 203 63.1
TWI09G0406 Tripterygium wilfordii HOM05D002214 ORTHO05D007367 1.1e-63 248.4 203 63.1
Atru.chr11.2515 Acer truncatum HOM05D002214 ORTHO05D007367 4.3e-63 246.5 260 51.9
FAN10G2270 Fragaria x ananassa HOM05D002214 ORTHO05D007367 4.3e-63 246.5 203 63.1
Duzib138G1340 Durio zibethinus HOM05D002214 ORTHO05D007367 5.6e-63 246.1 205 62.0
Ciclev10031605m.g Citrus clementina HOM05D002214 ORTHO05D007367 9.5e-63 245.4 203 63.1
Manes.07G010800 Manihot esculenta HOM05D002214 ORTHO05D007367 9.5e-63 245.4 203 63.5
Actinidia19424 Actinidia chinensis HOM05D002214 ORTHO05D007367 1.6e-62 244.6 203 62.6
Hma1.2p1_0685F.1_g203260 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 3.6e-62 243.4 203 60.1
Aqoxy2G00221 Aquilegia oxysepala HOM05D002214 ORTHO05D007367 2.3e-61 240.7 207 60.9
MD07G1023200 Malus domestica HOM05D002214 ORTHO05D007367 2.3e-61 240.7 203 63.5
C07p46730 Brassica napus HOM05D002214 ORTHO05D007367 5.2e-61 239.6 205 60.5
Thhalv10010397m.g Eutrema salsugineum HOM05D002214 ORTHO05D007367 8.9e-61 238.8 205 60.5
Ca_24837_v3 Cicer arietinum L. HOM05D002214 ORTHO05D007367 1.2e-60 238.4 203 56.2
BcaC06g33020 Brassica carinata HOM05D002214 ORTHO05D007367 2.0e-60 237.7 205 59.5
AT3G52030 Arabidopsis thaliana HOM05D002214 ORTHO05D007367 2.6e-60 237.3 205 60.0
BcaC06g33377 Brassica carinata HOM05D002214 ORTHO05D007367 2.6e-60 237.3 205 60.0
CARHR161660 Cardamine hirsuta HOM05D002214 ORTHO05D007367 3.4e-60 236.9 205 59.0
Gohir.D08G163300 Gossypium hirsutum HOM05D002214 ORTHO05D007367 4.4e-60 236.5 203 59.6
Gorai.004G170100 Gossypium raimondii HOM05D002214 ORTHO05D007367 4.4e-60 236.5 203 59.6
A03p48610 Brassica napus HOM05D002214 ORTHO05D007367 5.8e-60 236.1 205 60.0
Lalb_Chr25g0282551 Lupinus albus HOM05D002214 ORTHO05D007367 7.6e-60 235.7 205 58.5
Nn7g36334 Nelumbo nucifera HOM05D002214 ORTHO05D007367 9.9e-60 235.3 207 58.9
Thecc.01G406200 Theobroma cacao HOM05D002214 ORTHO05D007367 9.9e-60 235.3 203 59.6
Sp5g10260 Schrenkiella parvula HOM05D002214 ORTHO05D007367 1.7e-59 234.6 205 59.0
ClCG09G004430 Citrullus lanatus HOM05D002214 ORTHO05D007367 2.9e-59 233.8 209 58.4
Gohir.A08G142300 Gossypium hirsutum HOM05D002214 ORTHO05D007367 3.7e-59 233.4 203 59.1
Sed0008197 Sechium edule HOM05D002214 ORTHO05D007367 4.9e-59 233.0 255 50.2
Rhsim07G0058900 Rhododendron simsii HOM05D002214 ORTHO05D007367 6.4e-59 232.6 203 59.6
CANSAT80G0536 Cannabis sativa HOM05D002214 ORTHO05D007367 8.4e-59 232.3 203 57.1
Carub.0005s1835 Capsella rubella HOM05D002214 ORTHO05D007367 8.4e-59 232.3 205 58.5
Eucgr.G03301 Eucalyptus grandis HOM05D002214 ORTHO05D007367 8.4e-59 232.3 204 59.8
Eucgr.G03320 Eucalyptus grandis HOM05D002214 ORTHO05D007367 1.9e-58 231.1 204 59.8
Prupe.2G024000 Prunus persica HOM05D002214 ORTHO05D007367 2.4e-58 230.7 206 59.7
FAN06G2164 Fragaria x ananassa HOM05D002214 ORTHO05D007367 7.1e-58 229.2 175 66.9
Glyma.11G159230 Glycine max HOM05D002214 ORTHO05D007367 7.1e-58 229.2 205 56.6
Sc11g0009040 Simmondsia chinensis HOM05D002214 ORTHO05D007367 7.1e-58 229.2 203 58.1
TAR633G1256 Trochodendron aralioides HOM05D002214 ORTHO05D007367 7.1e-58 229.2 206 60.7
THA.LOC104817574 Tarenaya hassleriana HOM05D002214 ORTHO05D007367 9.2e-58 228.8 205 57.6
Haze_03152 Corylus avellana HOM05D002214 ORTHO05D007367 1.2e-57 228.4 213 59.2
BolC7t45191H Brassica oleracea HOM05D002214 ORTHO05D007367 4.6e-57 226.5 222 55.4
Haze_03149 Corylus avellana HOM05D002214 ORTHO05D007367 6.0e-57 226.1 213 58.7
CsaV3_7G030710 Cucumis sativus L. HOM05D002214 ORTHO05D007367 6.0e-57 226.1 262 48.5
Medtr3g034210 Medicago truncatula HOM05D002214 ORTHO05D007367 7.8e-57 225.7 205 54.1
AL5G32570 Arabidopsis lyrata HOM05D002214 ORTHO05D007367 1.3e-56 224.9 219 55.3
Lj3g0007976 Lotus japonicus HOM05D002214 ORTHO05D007367 1.3e-56 224.9 205 56.6
TPR.G14558 Trifolium pratense HOM05D002214 ORTHO05D007367 1.7e-56 224.6 205 54.1
BraA03t13966Z Brassica rapa HOM05D002214 ORTHO05D007367 1.5e-55 221.5 223 54.3
Phvul.005G035100 Phaseolus vulgaris HOM05D002214 ORTHO05D007367 1.9e-55 221.1 205 54.6
arahy.Tifrunner.gnm1.ann1.IP56PK Arachis hypogaea HOM05D002214 ORTHO05D007367 3.3e-55 220.3 205 55.1
arahy.Tifrunner.gnm1.ann1.KRTV89 Arachis hypogaea HOM05D002214 ORTHO05D007367 3.3e-55 220.3 205 55.1
AUR62023095 Chenopodium quinoa HOM05D002214 ORTHO05D007367 1.2e-54 218.4 249 49.0
Psat5g212440 Pisum sativum HOM05D002214 ORTHO05D007367 3.6e-54 216.9 205 52.7
Dinv07431 Davidia involucrata HOM05D002214 ORTHO05D005113 1.1e-53 215.3 191 61.3
VMungo1217G0001 Vigna mungo HOM05D002214 ORTHO05D007367 6.8e-53 212.6 205 52.7
Solyc01g087910.4 Solanum lycopersicum HOM05D002214 ORTHO05D007367 8.9e-53 212.2 208 51.4
CAN.G909.6 Capsicum annuum HOM05D002214 ORTHO05D007367 1.2e-52 211.8 203 51.2
Nitab4.5_0001244g0060 Nicotiana tabacum HOM05D002214 ORTHO05D007367 1.5e-52 211.5 225 49.8
vmacro13697 Vaccinium macrocarpon HOM05D002214 ORTHO05D007367 1.5e-52 211.5 208 54.8
Sopen01g034840 Solanum pennellii HOM05D002214 ORTHO05D007367 2.6e-52 210.7 208 50.5
Peaxi162Scf01270g00126 Petunia axillaris HOM05D002214 ORTHO05D007367 9.9e-52 208.8 204 51.0
PSO339G3363 Papaver somniferum HOM05D002214 ORTHO05D007367 4.9e-51 206.5 249 48.2
ATR0782G063 Amborella trichopoda HOM05D002214 ORTHO05D007367 6.4e-51 206.1 204 52.5
PSO384G3385 Papaver somniferum HOM05D002214 ORTHO05D007367 8.4e-51 205.7 208 54.8
Oeu051405.1 Olea europaea HOM05D002214 ORTHO05D007367 1.1e-50 205.3 209 52.6
SGA_v2.0_scaffold5G02954 Striga asiatica HOM05D002214 ORTHO05D007367 1.9e-50 204.5 203 52.7
Migut.N01800 Erythranthe guttata HOM05D002214 ORTHO05D007367 5.4e-50 203.0 202 53.0
PGR031G3638 Punica granatum HOM05D002214 ORTHO05D007367 2.7e-49 200.7 246 46.7
unitig_22.g5896 Utricularia gibba HOM05D002214 ORTHO05D007367 4.6e-49 199.9 248 43.1
DCAR_022375 Daucus carota HOM05D002214 ORTHO05D007367 1.3e-48 198.4 203 51.7
Ah.16g100650 Amaranthus hybridus HOM05D002214 ORTHO05D007367 1.5e-47 194.9 206 50.5
ECA236G0637 Erigeron canadensis HOM05D002214 ORTHO05D001664 8.1e-46 189.1 203 48.3
HanXRQChr04g0119861 Helianthus annuus HOM05D002214 ORTHO05D007367 1.8e-45 188.0 177 53.7
SalBow6G2835 Salvia bowleyana HOM05D002214 ORTHO05D007367 5.3e-45 186.4 176 54.0
Lsat_1_v5_gn_7_35840 Lactuca sativa HOM05D002214 ORTHO05D007367 5.8e-44 183.0 203 46.8
Zm00001eb091260 Zea mays HOM05D002214 ORTHO05D007367 4.9e-43 179.9 208 45.2
Cc02_g28820 Coffea canephora HOM05D002214 ORTHO05D007367 1.1e-42 178.7 297 37.4
Os11g0182400 Oryza sativa ssp. japonica HOM05D002214 ORTHO05D007367 1.6e-41 174.9 208 44.2
CSS0000146 Camellia sinensis var. sinensis HOM05D002214 ORTHO05D007367 4.6e-41 173.3 161 57.8
Aa31LG10G14890 Aethionema arabicum HOM05D002214 ORTHO05D007367 5.6e-39 166.4 162 55.6
MBI03_g28525_MAGBIO Magnolia biondii HOM05D002214 ORTHO05D007367 9.6e-39 165.6 213 45.5
HPP92_021380 Vanilla planifolia HOM05D002214 ORTHO05D007367 2.8e-38 164.1 247 37.2
FvH4_2g17890 Fragaria vesca HOM05D002214 ORTHO05D007367 2.8e-30 137.5 274 43.1
FAN24G1013 Fragaria x ananassa HOM05D002214 ORTHO05D007367 6.2e-30 136.3 274 42.7
RcHm_v2.0_Chr6g0283161 Rosa chinensis HOM05D002214 ORTHO05D007367 8.1e-30 136.0 221 47.1
EL10Ac2g04369 Beta vulgaris HOM05D002214 ORTHO05D007367 4.0e-29 133.7 205 41.0
FAN15G3441 Fragaria x ananassa HOM05D002214 ORTHO05D007367 6.5e-27 126.3 274 41.2
FAN27G1164 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.9e-26 124.8 223 39.9
SEGI_30351 Sequoiadendron giganteum HOM05D002214 ORTHO05D007367 1.9e-26 124.8 194 38.7
Nitab4.5_0008942g0050 Nicotiana tabacum HOM05D002214 ORTHO05D007367 2.5e-26 124.4 108 56.5
FAN24G2408 Fragaria x ananassa HOM05D002214 ORTHO05D007367 3.2e-26 124.0 219 43.4
AagrBONN_evm.TU.Sc2ySwM_344.2511 Anthoceros agrestis HOM05D002214 ORTHO05D007367 8.7e-24 115.9 206 33.0
COL.COLO4_12334 Corchorus olitorius HOM05D000031 ORTHO05D000030 1.5e-23 115.2 114 52.6
FAN27G1816 Fragaria x ananassa HOM05D002214 ORTHO05D007367 5.7e-23 113.2 204 45.1
AUR62009418 Chenopodium quinoa HOM05D002214 ORTHO05D007367 9.6e-23 112.5 110 51.8
Thecc.01G405800 Theobroma cacao HOM05D002214 ORTHO05D007367 3.1e-21 107.5 83 62.7
Pp3c8_19810 Physcomitrium patens HOM05D002214 ORTHO05D007367 2.0e-20 104.8 206 32.0
Cpa.g.sc125.51 Carica papaya HOM05D002214 ORTHO05D007367 6.5e-19 99.8 144 43.1
Duzib133G0745 Durio zibethinus HOM05D002214 ORTHO05D007367 1.4e-18 98.6 62 71.0
MELO3C023585.2 Cucumis melo HOM05D002214 ORTHO05D007367 7.2e-18 96.3 245 30.6
SMO137G0282 Selaginella moellendorffii HOM05D002214 ORTHO05D007367 1.3e-16 92.0 201 31.3
MD07G1016900 Malus domestica HOM05D002214 ORTHO05D007367 1.5e-15 88.6 95 53.7
CBR_g46897 Chara braunii HOM05D002214 ORTHO05D007367 9.7e-15 85.9 168 30.4
Thecc.01G405700 Theobroma cacao HOM05D002214 ORTHO05D007367 1.4e-13 82.0 54 66.7
FvH4_2g17910 Fragaria vesca HOM05D002214 ORTHO05D007367 3.2e-10 70.9 120 36.7
FAN24G3278 Fragaria x ananassa HOM05D002214 ORTHO05D007367 3.2e-10 70.9 120 36.7
Cpa.g.sc125.50 Carica papaya HOM05D002214 ORTHO05D007367 2.7e-09 67.8 79 45.6
BcaC04g19081 Brassica carinata HOM05D002214 ORTHO05D005113 6.1e-09 66.6 60 63.3
CDE04G0429 Ceratophyllum demersum HOM05D002214 ORTHO05D007367 6.1e-09 66.6 79 44.3
QL02p082389 Quercus lobata HOM05D000532 ORTHO05D010436 7.9e-09 66.2 34 88.2
Hund16632 Selenicereus undatus HOM05D002214 ORTHO05D007367 7.9e-09 66.2 45 68.9
BolC9t59169H Brassica oleracea HOM05D002214 ORTHO05D005113 1.4e-08 65.5 55 63.6
Sp6g30240 Schrenkiella parvula HOM05D002214 ORTHO05D005113 6.7e-08 63.2 60 61.7
QL04p010049 Quercus lobata HOM05D002214 ORTHO05D005113 1.1e-07 62.4 63 63.5
Psat5g212520 Pisum sativum HOM05D002214 ORTHO05D005113 2.0e-07 61.6 53 71.7
Sc11g0009030 Simmondsia chinensis HOM05D002214 ORTHO05D005113 2.8e-06 57.8 57 63.2
Cfa010811 Carpinus fangiana HOM05D002214 ORTHO05D005113 4.8e-06 57.0 32 84.4
CiPaw.13G008000 Carya illinoinensis HOM05D002214 ORTHO05D005113 4.8e-06 57.0 32 84.4
Haze_03145 Corylus avellana HOM05D002214 ORTHO05D005113 4.8e-06 57.0 32 84.4
Haze_03148 Corylus avellana HOM05D002214 ORTHO05D005113 4.8e-06 57.0 32 84.4
DCAR_003226 Daucus carota HOM05D002214 ORTHO05D005113 4.8e-06 57.0 47 70.2
Sed0009169 Sechium edule HOM05D002214 ORTHO05D005113 4.8e-06 57.0 32 84.4
arahy.Tifrunner.gnm1.ann1.516IJ7 Arachis hypogaea HOM05D002214 ORTHO05D005113 6.3e-06 56.6 32 81.2


User provided reference genes

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