Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p000430 Quercus lobata HOM05D004413 ORTHO05D005199 1.5e-98 362.8 182 100.0
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 5.4e-72 274.6 210 71.9
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 3.6e-68 261.9 209 69.4
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 2.3e-51 206.1 215 56.3
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 3.9e-46 188.7 214 54.2
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 2.9e-41 172.6 215 47.4
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 1.1e-37 160.6 208 46.2
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 3.3e-37 159.1 216 44.0
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 5.6e-37 158.3 203 46.3
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 2.1e-36 156.4 212 46.2
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 4.7e-36 155.2 216 44.4
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 1.1e-35 154.1 215 45.1
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 4.0e-35 152.1 206 46.6
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 1.5e-34 150.2 196 44.9
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.4e-34 149.1 186 47.3
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 7.6e-34 147.9 216 43.1
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 3.8e-33 145.6 215 41.9
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 4.9e-33 145.2 216 42.6
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 6.4e-33 144.8 212 42.9
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 6.4e-33 144.8 216 42.6
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 8.4e-33 144.4 216 42.1
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 1.1e-32 144.1 217 41.5
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 1.1e-32 144.1 214 44.4
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 1.4e-32 143.7 216 42.1
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 1.9e-32 143.3 213 43.7
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 2.4e-32 142.9 217 42.9
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 1.6e-31 140.2 215 43.7
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 5.1e-30 135.2 213 43.7
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 8.6e-30 134.4 216 41.7
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 1.5e-29 133.7 235 37.9
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 1.6e-28 130.2 214 42.5
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 2.1e-28 129.8 221 38.9
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 2.8e-28 129.4 215 40.0
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 4.7e-28 128.6 216 37.5
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 8.1e-28 127.9 243 39.5
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 1.1e-27 127.5 215 39.1
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 1.1e-27 127.5 216 37.0
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 1.8e-27 126.7 201 42.8
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 4.0e-27 125.6 229 38.0
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 4.0e-27 125.6 229 38.0
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 5.2e-27 125.2 215 38.6
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 6.9e-27 124.8 214 39.7
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 1.2e-26 124.0 214 36.9
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 4.4e-26 122.1 214 37.4
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 9.9e-26 120.9 214 38.8
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 1.3e-25 120.6 218 37.6
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 4.9e-25 118.6 185 41.6
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 1.4e-24 117.1 226 36.7
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 5.4e-24 115.2 232 34.9
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 7.1e-24 114.8 191 38.2
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 7.1e-24 114.8 195 42.6
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 1.2e-23 114.0 212 40.6
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 2.1e-23 113.2 221 34.8
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 2.1e-23 113.2 201 37.8
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 2.7e-23 112.8 202 41.1
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 4.6e-23 112.1 204 38.7
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 1.0e-22 110.9 200 36.0
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 1.0e-22 110.9 204 37.3
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 1.7e-22 110.2 214 37.4
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 2.3e-22 109.8 219 32.4
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 3.9e-22 109.0 184 40.2
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 6.6e-22 108.2 209 36.4
DCAR_015690 Daucus carota HOM05D004413 ORTHO05D005199 6.6e-22 108.2 223 35.0
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 1.5e-21 107.1 219 30.6
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 5.6e-21 105.1 206 32.5
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 5.6e-21 105.1 206 32.5
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 1.3e-20 104.0 200 33.5
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 2.1e-20 103.2 206 32.0
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 2.8e-20 102.8 204 36.8
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 3.6e-20 102.4 216 37.0
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 8.1e-20 101.3 201 30.8
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 8.1e-20 101.3 201 30.8
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 8.1e-20 101.3 158 39.2
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 8.1e-20 101.3 191 35.6
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 1.4e-19 100.5 205 34.1
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 5.3e-19 98.6 205 33.2
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 5.3e-19 98.6 213 32.4
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 9.0e-19 97.8 198 34.8
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 9.0e-19 97.8 202 33.7
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 1.2e-18 97.4 217 34.1
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 2.0e-18 96.7 214 35.0
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 2.0e-18 96.7 188 36.2
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 3.4e-18 95.9 214 32.2
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 5.8e-18 95.1 205 32.2
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 5.8e-18 95.1 157 38.9
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 1.7e-17 93.6 153 37.9
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 1.9e-16 90.1 219 32.4
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 2.4e-16 89.7 178 36.0
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 3.2e-16 89.4 180 31.7
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 4.2e-16 89.0 217 31.8
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 9.3e-16 87.8 182 33.0
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 1.2e-15 87.4 217 31.8
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.2e-15 87.4 84 48.8
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 2.7e-15 86.3 174 33.3
TAR633G2579 Trochodendron aralioides HOM05D004413 ORTHO05D005199 2.7e-15 86.3 77 50.6
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 3.5e-15 85.9 194 33.5
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 4.6e-15 85.5 176 34.7
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 1.0e-14 84.3 79 53.2
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 1.8e-14 83.6 79 53.2
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 2.3e-14 83.2 186 32.3
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 5.1e-14 82.0 96 51.0
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 4.3e-13 79.0 83 49.4
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 4.3e-13 79.0 100 42.0
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 2.1e-12 76.6 182 34.1
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 2.8e-12 76.3 180 33.3
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 3.1e-11 72.8 180 29.4
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 4.0e-11 72.4 84 42.9
Atru.chr1.1384 Acer truncatum HOM05D004413 ORTHO05D005199 5.3e-11 72.0 95 47.4
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 5.3e-11 72.0 193 33.7
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 9.0e-11 71.2 233 29.2
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 2.6e-10 69.7 192 30.7
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 2.6e-10 69.7 185 35.7
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 3.8e-09 65.9 43 69.8
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 1.9e-08 63.5 49 51.0
BraA09t42095Z Brassica rapa HOM05D004413 ORTHO05D005199 1.9e-08 63.5 54 50.0
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 1.9e-08 63.5 194 30.9
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 1.9e-08 63.5 63 49.2
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 2.4e-08 63.2 49 49.0
Lju170C28T1 Lonicera japonica HOM05D004413 ORTHO05D005199 2.4e-08 63.2 83 49.4
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 2.4e-08 63.2 186 29.0
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 3.2e-08 62.8 231 26.0
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 4.2e-08 62.4 54 48.1
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 2.1e-07 60.1 62 43.5
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 4.6e-07 58.9 54 46.3
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 4.6e-07 58.9 54 46.3
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 8.7e-06 54.7 44 47.7


User provided reference genes

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