Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 8.0e-277 956.4 476 100.0
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 1.3e-247 859.4 476 92.4
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 4.1e-172 608.6 480 67.7
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 1.1e-164 583.9 480 66.5
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 1.6e-144 516.9 482 57.9
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 2.8e-144 516.2 444 61.7
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 5.4e-140 501.9 482 56.6
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 1.6e-139 500.4 476 55.7
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 4.4e-134 482.3 469 58.0
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 4.4e-134 482.3 475 54.9
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.9e-133 479.6 467 56.1
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 3.7e-133 479.2 465 56.3
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 8.3e-133 478.0 478 55.6
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 1.4e-132 477.2 487 54.4
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 3.2e-132 476.1 481 54.9
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 3.2e-132 476.1 464 57.5
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 5.4e-132 475.3 467 55.9
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 7.1e-132 474.9 469 55.9
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 9.2e-132 474.6 467 55.9
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 1.0e-130 471.1 479 55.9
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 1.3e-130 470.7 481 55.3
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.3e-130 469.9 471 55.0
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 6.6e-130 468.4 481 55.3
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 8.6e-130 468.0 477 56.4
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 7.3e-129 464.9 462 54.8
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 1.6e-128 463.8 478 55.2
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 2.1e-128 463.4 478 55.2
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 1.1e-127 461.1 471 54.4
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 2.3e-127 459.9 487 54.2
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 3.1e-127 459.5 462 54.1
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 3.1e-127 459.5 478 55.0
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 7.6e-126 454.9 494 53.6
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 4.9e-125 452.2 469 55.4
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 1.1e-124 451.1 441 55.3
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 2.7e-123 446.4 468 52.4
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 1.0e-122 444.5 469 52.0
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 6.6e-122 441.8 474 50.8
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 2.1e-120 436.8 466 52.6
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 2.1e-120 436.8 483 52.0
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 2.8e-120 436.4 473 50.3
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 2.6e-118 429.9 508 50.6
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 9.9e-118 427.9 468 50.2
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 4.9e-117 425.6 483 49.5
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 8.4e-117 424.9 464 50.6
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 1.9e-116 423.7 468 51.1
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 2.4e-116 423.3 466 51.1
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 3.2e-116 422.9 478 48.3
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 9.3e-116 421.4 467 50.1
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 9.3e-116 421.4 463 50.8
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 4.6e-115 419.1 567 45.9
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 1.5e-113 414.1 464 50.9
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 1.5e-113 414.1 497 47.5
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 1.5e-113 414.1 469 52.0
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 1.9e-113 413.7 466 48.3
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 5.6e-113 412.1 480 49.0
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 2.1e-112 410.2 471 51.2
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.2e-110 404.4 348 58.6
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 5.8e-110 402.1 482 48.5
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 5.8e-110 402.1 460 49.6
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 7.6e-110 401.7 463 48.6
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 2.2e-109 400.2 471 47.6
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 1.9e-108 397.1 472 49.2
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 7.9e-107 391.7 374 55.1
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 1.1e-105 387.9 494 48.2
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 2.5e-105 386.7 477 47.6
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 5.6e-105 385.6 489 46.2
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 9.6e-105 384.8 466 48.3
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 2.8e-104 383.3 368 53.0
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 3.7e-104 382.9 467 47.1
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 1.3e-101 374.4 472 46.2
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 1.3e-101 374.4 474 45.1
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 2.9e-101 373.2 477 45.7
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 3.8e-101 372.9 466 46.8
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 8.4e-101 371.7 472 46.2
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 8.4e-101 371.7 472 46.2
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 3.2e-100 369.8 356 56.2
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 1.0e-98 364.8 397 50.1
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 3.0e-98 363.2 476 46.8
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 6.7e-98 362.1 481 44.9
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 6.7e-98 362.1 481 44.9
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 1.1e-97 361.3 467 46.9
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 1.1e-97 361.3 402 48.5
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 1.5e-97 360.9 453 47.2
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 2.5e-97 360.1 480 43.1
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 2.5e-97 360.1 464 44.6
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 4.3e-97 359.4 463 46.0
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 2.1e-96 357.1 474 44.9
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 2.8e-96 356.7 451 45.9
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 6.2e-96 355.5 465 44.5
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 1.1e-95 354.8 381 49.9
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 5.3e-95 352.4 338 53.6
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 9.0e-95 351.7 473 44.6
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 2.0e-94 350.5 487 44.6
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 7.6e-94 348.6 470 44.0
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 8.4e-93 345.1 473 44.4
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 3.2e-92 343.2 485 42.5
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 4.2e-92 342.8 587 39.2
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 3.0e-90 336.7 478 44.6
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 1.5e-89 334.3 491 41.1
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 2.5e-89 333.6 515 41.9
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 4.5e-86 322.8 479 43.4
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 1.3e-85 321.2 462 43.5
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 1.7e-85 320.9 431 45.0
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 7.4e-81 305.4 453 41.3
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.8e-80 303.5 352 50.9
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 5.9e-78 295.8 465 39.6
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.7e-77 294.3 350 48.9
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 6.5e-77 292.4 335 47.8
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 6.5e-77 292.4 335 47.8
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 5.5e-76 289.3 343 47.2
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 6.1e-75 285.8 343 46.9
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 6.1e-75 285.8 343 46.9
QL04p000430 Quercus lobata HOM05D004413 ORTHO05D005199 1.5e-70 271.2 210 71.9
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 2.2e-69 267.3 283 50.5
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 1.1e-68 265.0 492 36.6
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 3.9e-66 256.5 402 42.0
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 3.7e-64 250.0 394 41.4
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 7.0e-63 245.7 373 39.7
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 2.9e-61 240.4 319 42.6
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 2.1e-59 234.2 383 38.1
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 1.0e-58 231.9 189 61.4
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 9.7e-57 225.3 226 54.0
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.4e-55 221.5 350 38.6
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 6.3e-48 196.1 352 36.9
Sopen01g033580 Solanum pennellii HOM05D004413 ORTHO05D005199 1.8e-47 194.5 140 65.0
GSVIVG01027705001 Vitis vinifera HOM05D004413 ORTHO05D005199 5.9e-46 189.5 137 69.3
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 1.1e-44 185.3 317 39.1
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 2.5e-44 184.1 347 35.4
DCAR_015691 Daucus carota HOM05D004413 ORTHO05D005199 7.2e-44 182.6 142 62.0
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 1.8e-42 177.9 345 34.8
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 6.8e-42 176.0 216 45.4
AagrBONN_evm.TU.Sc2ySwM_228.625 Anthoceros agrestis HOM05D004413 ORTHO05D005199 8.9e-42 175.6 352 36.1
Actinidia21570 Actinidia chinensis HOM05D004413 ORTHO05D005199 9.2e-39 165.6 94 78.7
GSVIVG01027710001 Vitis vinifera HOM05D004413 ORTHO05D005199 5.6e-36 156.4 107 71.0
Cre01.g049400 Chlamydomonas reinhardtii HOM05D004413 ORTHO05D005199 2.1e-35 154.5 209 40.7
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 8.9e-34 149.1 195 40.5
DCAR_015690 Daucus carota HOM05D004413 ORTHO05D005199 1.7e-32 144.8 224 43.3
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 1.1e-31 142.1 143 54.5
Actinidia15863 Actinidia chinensis HOM05D004413 ORTHO05D005199 7.0e-31 139.4 99 69.7
TAR633G2579 Trochodendron aralioides HOM05D004413 ORTHO05D005199 8.0e-27 125.9 126 52.4
A08p37250 Brassica napus HOM05D004413 ORTHO05D005199 2.3e-26 124.4 72 77.8
GSVIVG01018194001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.2e-22 112.1 101 57.4
SEGI_10444 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.6e-22 111.7 245 30.6
GSVIVG01027698001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.7e-22 110.9 63 76.2
Manes.10G149900 Manihot esculenta HOM05D000073 ORTHO05D000033 7.8e-22 109.4 72 69.4
SEGI_03996 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.3e-21 108.6 245 29.8
MCO07G333 Micromonas commoda HOM05D004413 ORTHO05D005199 1.1e-20 105.5 227 31.7
HanXRQChr11g0328201 Helianthus annuus HOM05D004413 ORTHO05D005199 3.3e-20 104.0 73 71.2
PRCOL_00005718 Prasinoderma coloniale HOM05D004413 ORTHO05D005199 1.6e-19 101.7 169 37.3
BraA09t42095Z Brassica rapa HOM05D004413 ORTHO05D005199 5.2e-18 96.7 157 35.7
Actinidia15864 Actinidia chinensis HOM05D004413 ORTHO05D005199 7.5e-17 92.8 55 72.7
GSVIVG01027714001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.7e-16 90.5 165 41.2
GSVIVG01026105001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.6e-14 85.1 54 75.9
GSVIVG01012403001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.5e-14 84.0 54 74.1
GSVIVG01027696001 Vitis vinifera HOM05D004413 ORTHO05D005199 4.6e-14 83.6 48 72.9
Atru.chr1.1384 Acer truncatum HOM05D004413 ORTHO05D005199 1.2e-11 75.5 99 51.5
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 2.0e-09 68.2 47 61.7
TWI73G0758 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 4.4e-09 67.0 46 67.4
GSVIVG01037069001 Vitis vinifera HOM05D004413 ORTHO05D005199 4.9e-08 63.5 45 68.9
Lju170C28T1 Lonicera japonica HOM05D004413 ORTHO05D005199 2.4e-07 61.2 62 54.8
Sc24g0000530 Simmondsia chinensis HOM05D004413 ORTHO05D005199 3.2e-07 60.8 140 37.1


User provided reference genes

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