Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p068116 Quercus lobata HOM05D004594 ORTHO05D005225 0.0e+00 2264.2 1414 100.0
Cfa008959 Carpinus fangiana HOM05D004594 ORTHO05D005225 0.0e+00 1523.1 1434 69.9
Haze_11988 Corylus avellana HOM05D004594 ORTHO05D005225 0.0e+00 1516.5 1514 66.6
CiPaw.06G087400 Carya illinoinensis HOM05D004594 ORTHO05D005225 0.0e+00 1493.0 1422 67.4
CiPaw.05G132100 Carya illinoinensis HOM05D004594 ORTHO05D005225 0.0e+00 1395.6 1362 66.7
Dinv02961 Davidia involucrata HOM05D004594 ORTHO05D005225 0.0e+00 1303.5 1451 60.3
Manes.01G034200 Manihot esculenta HOM05D004594 ORTHO05D005225 0.0e+00 1245.3 1443 60.2
CANSAT64G0453 Cannabis sativa HOM05D004594 ORTHO05D005225 0.0e+00 1244.2 1466 59.3
Ciclev10030522m.g Citrus clementina HOM05D004594 ORTHO05D005225 0.0e+00 1238.4 1420 58.3
Manes.05G104800 Manihot esculenta HOM05D004594 ORTHO05D005225 0.0e+00 1221.8 1440 60.6
MD16G1069300 Malus domestica HOM05D004594 ORTHO05D005225 0.0e+00 1218.0 1429 59.6
GSVIVG01019950001 Vitis vinifera HOM05D004594 ORTHO05D005225 0.0e+00 1197.2 1441 59.1
Potri.010G166100 Populus trichocarpa HOM05D004594 ORTHO05D005225 0.0e+00 1196.8 1484 58.2
RcHm_v2.0_Chr4g0439441 Rosa chinensis HOM05D004594 ORTHO05D005225 0.0e+00 1166.4 1445 55.9
Duzib248G1210 Durio zibethinus HOM05D004594 ORTHO05D005225 0.0e+00 1165.2 1440 55.8
Actinidia11790 Actinidia chinensis HOM05D004594 ORTHO05D005225 0.0e+00 1151.7 1492 56.8
TWI75G1472 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 0.0e+00 1150.2 1497 54.9
FvH4_4g31060 Fragaria vesca HOM05D004594 ORTHO05D005225 0.0e+00 1145.2 1445 55.7
FAN22G0563 Fragaria x ananassa HOM05D004594 ORTHO05D005225 0.0e+00 1144.4 1442 54.8
FAN07G2218 Fragaria x ananassa HOM05D004594 ORTHO05D005225 0.0e+00 1143.3 1440 54.9
Prupe.1G277900 Prunus persica HOM05D004594 ORTHO05D005225 0.0e+00 1136.3 1444 56.9
FAN17G1193 Fragaria x ananassa HOM05D004594 ORTHO05D005225 0.0e+00 1135.9 1440 54.7
Eucgr.G02485 Eucalyptus grandis HOM05D004594 ORTHO05D005225 0.0e+00 1122.1 1445 54.3
Thecc.02G342500 Theobroma cacao HOM05D004594 ORTHO05D005225 0.0e+00 1121.3 1449 56.1
FAN12G0764 Fragaria x ananassa HOM05D004594 ORTHO05D005225 0.0e+00 1108.6 1471 54.1
TWI79G0308 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 0.0e+00 1107.4 1481 53.5
ClCG09G021930 Citrullus lanatus HOM05D004594 ORTHO05D005225 0.0e+00 1103.2 1542 52.7
CsaV3_5G025180 Cucumis sativus L. HOM05D004594 ORTHO05D005225 0.0e+00 1087.0 1498 53.1
Glyma.01G051400 Glycine max HOM05D004594 ORTHO05D005225 0.0e+00 1087.0 1459 55.2
Phvul.003G045700 Phaseolus vulgaris HOM05D004594 ORTHO05D005225 0.0e+00 1078.2 1495 53.7
Ca_04825_v3 Cicer arietinum L. HOM05D004594 ORTHO05D005225 9.7e-312 1074.7 1517 53.8
VMungo1215G3128 Vigna mungo HOM05D004594 ORTHO05D005225 9.7e-312 1073.5 1504 53.0
Glyma.02G109900 Glycine max HOM05D004594 ORTHO05D005225 1.9e-311 1072.8 1497 54.9
Sed0022637 Sechium edule HOM05D004594 ORTHO05D005225 4.3e-310 1068.5 1471 54.4
Sabra10G0126400 Salix brachista HOM05D004594 ORTHO05D005225 1.4e-308 1063.5 1530 52.7
MELO3C002967.2 Cucumis melo HOM05D004594 ORTHO05D005225 4.0e-308 1062.0 1496 52.6
TAR371G0293 Trochodendron aralioides HOM05D004594 ORTHO05D005225 2.9e-306 1055.8 1468 52.0
arahy.Tifrunner.gnm1.ann1.8R27D6 Arachis hypogaea HOM05D004594 ORTHO05D005225 2.4e-305 1052.7 1544 52.3
Gohir.D04G191200 Gossypium hirsutum HOM05D004594 ORTHO05D005225 7.1e-305 1051.2 1447 54.8
Psat2g116320 Pisum sativum HOM05D004594 ORTHO05D005225 7.1e-305 1051.2 1500 53.5
Gorai.012G186600 Gossypium raimondii HOM05D004594 ORTHO05D005225 3.9e-303 1045.4 1445 54.4
Lalb_Chr10g0098431 Lupinus albus HOM05D004594 ORTHO05D005225 6.6e-303 1044.6 1543 52.9
Nn1g04524 Nelumbo nucifera HOM05D004594 ORTHO05D005225 8.4e-298 1027.7 1460 55.3
DCAR_013185 Daucus carota HOM05D004594 ORTHO05D005225 7.1e-297 1024.6 1465 55.1
Lj2g0016635 Lotus japonicus HOM05D004594 ORTHO05D005225 3.5e-296 1022.3 1516 54.1
Rhsim09G0077000 Rhododendron simsii HOM05D004594 ORTHO05D005225 3.6e-293 1012.3 1521 50.8
EL10Ac3g06731 Beta vulgaris HOM05D004594 ORTHO05D005225 1.0e-282 977.6 1460 51.6
Sopen04g003850 Solanum pennellii HOM05D004594 ORTHO05D005225 1.2e-275 954.1 1462 48.4
Hund25219 Selenicereus undatus HOM05D004594 ORTHO05D005225 1.0e-274 951.0 1451 50.4
PGR119G1944 Punica granatum HOM05D004594 ORTHO05D005225 1.1e-270 937.6 1433 50.8
CAN.G194.5 Capsicum annuum HOM05D004594 ORTHO05D005225 4.1e-268 929.1 1447 48.1
arahy.Tifrunner.gnm1.ann1.KB2NSX Arachis hypogaea HOM05D004594 ORTHO05D005225 2.2e-266 923.3 1702 45.4
Cc00_g08470 Coffea canephora HOM05D004594 ORTHO05D005225 6.5e-266 921.8 1504 46.9
TPR.G34709 Trifolium pratense HOM05D004594 ORTHO05D005225 1.1e-265 921.0 1444 51.7
Medtr5g042000 Medicago truncatula HOM05D004594 ORTHO05D005225 7.2e-265 918.3 1551 48.9
TAR629G1990 Trochodendron aralioides HOM05D004594 ORTHO05D005225 6.1e-264 915.2 1274 52.5
Nitab4.5_0000129g0280 Nicotiana tabacum HOM05D004594 ORTHO05D005225 1.1e-262 911.0 1469 48.2
AUR62035898 Chenopodium quinoa HOM05D004594 ORTHO05D005225 2.5e-262 909.8 1438 47.6
Peaxi162Scf00329g00617 Petunia axillaris HOM05D004594 ORTHO05D005225 1.2e-259 901.0 1435 49.2
Atru.chr11.1750 Acer truncatum HOM05D004594 ORTHO05D005225 3.6e-256 889.4 717 74.2
PSO013G0146 Papaver somniferum HOM05D004594 ORTHO05D005225 1.7e-250 870.5 1453 46.9
Aqoxy3G03454 Aquilegia oxysepala HOM05D004594 ORTHO05D005225 1.8e-247 860.5 1450 46.8
PSO832G1080 Papaver somniferum HOM05D004594 ORTHO05D005225 5.2e-247 859.0 1457 47.2
Migut.E00588 Erythranthe guttata HOM05D004594 ORTHO05D005225 6.3e-245 852.0 1466 47.2
Cpa.g.sc25.130 Carica papaya HOM05D004594 ORTHO05D005225 7.0e-244 848.6 1479 47.6
Nitab4.5_0001419g0070 Nicotiana tabacum HOM05D004594 ORTHO05D005225 5.9e-243 845.5 1527 46.1
CARHR145490 Cardamine hirsuta HOM05D004594 ORTHO05D005225 7.2e-241 838.6 1494 45.0
ECA233G5935 Erigeron canadensis HOM05D004594 ORTHO05D005225 2.7e-240 836.6 1461 46.9
Ah.13g075020 Amaranthus hybridus HOM05D004594 ORTHO05D005225 4.4e-238 829.3 1448 47.9
Solyc04g008680.4 Solanum lycopersicum HOM05D004594 ORTHO05D005225 4.4e-238 829.3 1359 46.5
AUR62035342 Chenopodium quinoa HOM05D004594 ORTHO05D005225 1.4e-236 824.3 1423 44.7
THA.LOC104824075 Tarenaya hassleriana HOM05D004594 ORTHO05D005225 5.4e-236 822.4 1480 47.1
Sc11g0002090 Simmondsia chinensis HOM05D004594 ORTHO05D005225 5.0e-234 815.8 1235 52.0
Carub.0005s0198 Capsella rubella HOM05D004594 ORTHO05D005225 8.5e-234 815.1 1460 44.7
ECA246G2651 Erigeron canadensis HOM05D004594 ORTHO05D005225 7.7e-227 792.0 1473 46.9
Sp2g14100 Schrenkiella parvula HOM05D004594 ORTHO05D005225 8.9e-223 778.5 1489 43.7
Oeu044046.4 Olea europaea HOM05D004594 ORTHO05D005225 9.8e-222 775.0 1254 46.9
AL5G12800 Arabidopsis lyrata HOM05D004594 ORTHO05D005225 2.2e-221 773.9 1470 44.3
SGA_v2.0_scaffold140G35452 Striga asiatica HOM05D004594 ORTHO05D005225 9.2e-220 768.5 1504 43.0
AT2G03150 Arabidopsis thaliana HOM05D004594 ORTHO05D005225 1.3e-218 764.6 1460 43.2
HanXRQChr08g0224741 Helianthus annuus HOM05D004594 ORTHO05D005225 2.5e-217 760.4 1406 46.7
C09p31000 Brassica napus HOM05D004594 ORTHO05D005225 1.5e-214 751.1 1460 44.1
Lsat_1_v5_gn_3_33900 Lactuca sativa HOM05D004594 ORTHO05D005225 5.8e-214 749.2 1445 44.1
BcaC04g21505 Brassica carinata HOM05D004594 ORTHO05D005225 3.7e-213 746.5 1461 44.1
BcaB07g30683 Brassica carinata HOM05D004594 ORTHO05D005225 6.4e-213 745.7 1448 43.8
BolC9t55959H Brassica oleracea HOM05D004594 ORTHO05D005225 3.2e-212 743.4 1461 43.5
A09p24110 Brassica napus HOM05D004594 ORTHO05D005225 4.6e-211 739.6 1458 44.4
BraA09t38011Z Brassica rapa HOM05D004594 ORTHO05D005225 4.6e-211 739.6 1458 44.4
Aa31LG2G7300 Aethionema arabicum HOM05D004594 ORTHO05D005225 1.0e-210 738.4 1469 42.9
Thhalv10005550m.g Eutrema salsugineum HOM05D004594 ORTHO05D005225 2.5e-209 733.8 1483 46.0
Lsat_1_v5_gn_8_32581 Lactuca sativa HOM05D004594 ORTHO05D005225 2.0e-206 724.2 1442 43.1
HanXRQChr17g0540651 Helianthus annuus HOM05D004594 ORTHO05D005225 5.1e-194 682.9 1375 45.1
ATR0564G229 Amborella trichopoda HOM05D004594 ORTHO05D005225 5.4e-188 662.9 1489 40.9
MBI06_g33529_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 2.1e-187 661.0 1053 45.9
CDE07G1889 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 4.6e-187 659.8 1460 40.0
Gohir.A04G146601 Gossypium hirsutum HOM05D004594 ORTHO05D005225 9.0e-167 592.4 579 65.8
HanXRQChr14g0429131 Helianthus annuus HOM05D004594 ORTHO05D005225 1.6e-163 581.6 1475 39.5
SHI24774 Sapria himalayana HOM05D004594 ORTHO05D005225 8.5e-157 559.3 1204 37.1
HanXRQChr08g0225211 Helianthus annuus HOM05D004594 ORTHO05D005225 4.3e-153 547.0 1270 42.0
HPP92_001998 Vanilla planifolia HOM05D004594 ORTHO05D005225 2.4e-151 541.2 1231 41.0
CDE04G0114 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 6.5e-149 533.1 1428 35.1
Zm00001eb384230 Zea mays HOM05D004594 ORTHO05D005225 4.8e-144 516.9 1500 35.7
unitig_52.g17301 Utricularia gibba HOM05D004594 ORTHO05D005225 2.9e-125 454.5 834 43.2
C02p51140 Brassica napus HOM05D004594 ORTHO05D005225 4.4e-121 440.7 1288 34.8
Zm00001eb277410 Zea mays HOM05D004594 ORTHO05D005225 1.8e-119 435.3 1502 35.9
Gohir.1Z049516 Gossypium hirsutum HOM05D004594 ORTHO05D005225 4.4e-113 414.1 584 49.5
SEGI_16638 Sequoiadendron giganteum HOM05D004594 ORTHO05D005225 7.8e-94 350.1 1422 35.4
vmacro10769 Vaccinium macrocarpon HOM05D004594 ORTHO05D005225 2.3e-90 338.6 809 43.1
Atru.chr11.1748 Acer truncatum HOM05D004594 ORTHO05D005225 3.1e-82 311.6 446 54.3
QL03p068420 Quercus lobata HOM05D004594 ORTHO05D005225 1.2e-73 283.1 280 66.8
Pp3c12_12730 Physcomitrium patens HOM05D004594 ORTHO05D005225 2.5e-68 265.4 1501 26.8
Lj3E852T1 Lonicera japonica HOM05D004594 ORTHO05D005225 1.0e-61 243.4 251 66.9
QL03p068157 Quercus lobata HOM05D004594 ORTHO05D005225 2.0e-57 229.2 206 70.9
Mapoly0102s0024 Marchantia polymorpha HOM05D004594 ORTHO05D005225 7.6e-57 227.3 1524 27.4
Pp3c4_10880 Physcomitrium patens HOM05D004594 ORTHO05D005225 1.0e-53 216.9 1362 26.7
CBR_g5747 Chara braunii HOM05D004594 ORTHO05D005225 1.3e-51 209.9 348 35.9
SMO172G0003 Selaginella moellendorffii HOM05D004594 ORTHO05D005225 2.1e-51 209.1 978 24.0
AagrBONN_evm.TU.Sc2ySwM_340.1878 Anthoceros agrestis HOM05D004594 ORTHO05D005225 1.8e-45 189.5 1437 25.5
unitig_52.g17300 Utricularia gibba HOM05D004594 ORTHO05D005225 1.1e-39 170.2 441 41.5
Lj3E852G2 Lonicera japonica HOM05D004594 ORTHO05D005225 1.4e-39 169.9 292 49.7
Oeu034639.1 Olea europaea HOM05D004594 ORTHO05D005225 2.4e-34 152.5 221 48.0
Rhsim04G0150600 Rhododendron simsii HOM05D004594 ORTHO05D005225 5.3e-34 151.4 171 49.7
Os06g0562700 Oryza sativa ssp. japonica HOM05D004594 ORTHO05D005225 2.5e-31 142.5 361 36.3
Lj3A852T53 Lonicera japonica HOM05D004594 ORTHO05D005225 3.6e-30 138.7 141 58.2
Oeu032954.1 Olea europaea HOM05D004594 ORTHO05D005225 1.8e-29 136.3 92 69.6
Actinidia04099 Actinidia chinensis HOM05D004594 ORTHO05D005225 2.0e-28 132.9 261 46.0
BcaC03g17185 Brassica carinata HOM05D004594 ORTHO05D005225 8.2e-27 127.5 488 31.4
Gohir.1Z049616 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.5e-25 123.2 289 48.4
Lsat_1_v5_gn_3_92661 Lactuca sativa HOM05D004594 ORTHO05D005225 2.2e-24 119.4 105 61.0
TPR.G11445 Trifolium pratense HOM05D004594 ORTHO05D005225 4.2e-23 115.2 63 88.9
MBI02_g24140_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 5.2e-21 108.2 133 51.9
QL03p068414 Quercus lobata HOM05D004594 ORTHO05D005225 5.7e-20 104.8 57 89.5
Lsat_1_v5_gn_4_108040 Lactuca sativa HOM05D004594 ORTHO05D005225 3.7e-19 102.1 64 70.3
BolC2t11204H Brassica oleracea HOM05D004594 ORTHO05D005225 7.0e-18 97.8 814 25.6
MBI02_g24139_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 3.5e-17 95.5 69 68.1
Lsat_1_v5_gn_1_53021 Lactuca sativa HOM05D004594 ORTHO05D005225 4.5e-17 95.1 65 67.7
Atru.chr11.1749 Acer truncatum HOM05D004594 ORTHO05D005225 9.4e-15 87.4 168 48.2
BcaB05g23630 Brassica carinata HOM05D004594 ORTHO05D005225 9.4e-15 87.4 154 41.6
CBR_g5749 Chara braunii HOM05D004594 ORTHO05D005225 4.0e-13 82.0 324 31.2
Cre06.g283634 Chlamydomonas reinhardtii HOM05D004594 ORTHO05D005225 6.7e-13 81.3 314 23.9
RcHm_v2.0_Chr3g0458311 Rosa chinensis HOM05D004594 ORTHO05D005225 5.7e-12 78.2 89 52.8
SHI24778 Sapria himalayana HOM05D004594 ORTHO05D005225 1.3e-11 77.0 135 43.0
A02p33260 Brassica napus HOM05D004594 ORTHO05D005225 1.7e-11 76.6 50 64.0
A02p33250 Brassica napus HOM05D004594 ORTHO05D005225 8.2e-11 74.3 71 49.3
MBI05_g14664_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 8.2e-11 74.3 50 68.0
Potri.008G089100 Populus trichocarpa HOM05D004340 ORTHO05D005225 1.8e-10 73.2 54 68.5
MBI07_g23220_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 2.4e-10 72.8 103 43.7
HPP92_001999 Vanilla planifolia HOM05D004594 ORTHO05D005225 7.0e-10 71.2 69 52.2
Oeu052406.1 Olea europaea HOM05D004594 ORTHO05D005225 5.9e-09 68.2 92 51.1
BraA02t08348Z Brassica rapa HOM05D004594 ORTHO05D005225 1.0e-08 67.4 110 40.0
Nn3g17298 Nelumbo nucifera HOM05D004594 ORTHO05D005225 2.9e-08 65.9 69 52.2
RcHm_v2.0_Chr7g0218771 Rosa chinensis HOM05D004594 ORTHO05D005225 1.2e-06 60.5 89 39.3
Actinidia04098 Actinidia chinensis HOM05D004594 ORTHO05D005225 6.1e-06 58.2 236 37.3
BcaB07g33689 Brassica carinata HOM05D004594 ORTHO05D021612 8.0e-06 57.8 63 47.6


User provided reference genes

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