Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p062328 Quercus lobata HOM05D003884 ORTHO05D004482 1.7e-151 539.3 271 100.0
QL03p062368 Quercus lobata HOM05D003884 ORTHO05D004482 4.4e-147 524.6 294 91.8
Haze_12163 Corylus avellana HOM05D003884 ORTHO05D004482 7.3e-49 198.4 257 47.5
Dinv24898 Davidia involucrata HOM05D003884 ORTHO05D004482 8.0e-48 194.9 266 45.9
CSS0028392 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 3.7e-45 186.0 263 45.2
CiPaw.05G149600 Carya illinoinensis HOM05D003884 ORTHO05D004482 8.3e-45 184.9 263 44.9
GSVIVG01020166001 Vitis vinifera HOM05D003884 ORTHO05D004482 2.0e-43 180.3 262 45.0
COL.COLO4_37908 Corchorus olitorius HOM05D003884 ORTHO05D004482 7.8e-43 178.3 250 42.8
Medtr8g063190 Medicago truncatula HOM05D003884 ORTHO05D004482 1.8e-39 167.2 257 44.0
Prupe.1G258900 Prunus persica HOM05D003884 ORTHO05D004482 2.3e-39 166.8 233 43.8
TAR622G0672 Trochodendron aralioides HOM05D003884 ORTHO05D004482 2.3e-39 166.8 263 41.8
Gorai.009G344500 Gossypium raimondii HOM05D003884 ORTHO05D004482 3.1e-39 166.4 250 41.2
Thecc.02G243200 Theobroma cacao HOM05D003884 ORTHO05D004482 2.0e-38 163.7 246 41.5
Cpa.g.sc5.356 Carica papaya HOM05D003884 ORTHO05D004482 7.5e-38 161.8 256 42.2
Duzib248G1263 Durio zibethinus HOM05D003884 ORTHO05D004482 9.8e-38 161.4 250 41.6
TWI75G1604 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 4.9e-37 159.1 243 40.3
Nitab4.5_0004536g0010 Nicotiana tabacum HOM05D003884 ORTHO05D004482 6.4e-37 158.7 211 43.6
Psat4g125600 Pisum sativum HOM05D003884 ORTHO05D004482 6.4e-37 158.7 258 41.1
Rhsim12G0124000 Rhododendron simsii HOM05D003884 ORTHO05D004482 6.4e-37 158.7 268 40.3
Gohir.D05G321100 Gossypium hirsutum HOM05D003884 ORTHO05D004482 1.1e-36 157.9 234 41.5
MELO3C012022.2 Cucumis melo HOM05D003884 ORTHO05D004482 1.9e-36 157.1 226 41.2
Glyma.08G290900 Glycine max HOM05D003884 ORTHO05D004482 1.9e-36 157.1 252 41.3
VMungo0251G0159 Vigna mungo HOM05D003884 ORTHO05D004482 2.4e-36 156.8 221 44.3
Sed0027154 Sechium edule HOM05D003884 ORTHO05D004482 3.2e-36 156.4 263 38.4
Hma1.2p1_1017F.1_g248220 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 7.0e-36 155.2 204 43.6
AUR62026600 Chenopodium quinoa HOM05D003884 ORTHO05D004482 9.2e-36 154.8 261 39.1
arahy.Tifrunner.gnm1.ann1.9N1GR3 Arachis hypogaea HOM05D003884 ORTHO05D004482 1.6e-35 154.1 235 43.0
arahy.Tifrunner.gnm1.ann1.QD9WVF Arachis hypogaea HOM05D003884 ORTHO05D004482 1.6e-35 154.1 235 43.0
Gohir.A05G318900 Gossypium hirsutum HOM05D003884 ORTHO05D004482 2.1e-35 153.7 233 41.6
Lsat_1_v5_gn_3_49081 Lactuca sativa HOM05D003884 ORTHO05D004482 3.5e-35 152.9 253 37.5
Manes.01G197000 Manihot esculenta HOM05D003884 ORTHO05D004482 3.5e-35 152.9 260 40.8
FAN22G1839 Fragaria x ananassa HOM05D003884 ORTHO05D004482 2.3e-34 150.2 249 39.8
FvH4_4g34960 Fragaria vesca HOM05D003884 ORTHO05D004482 3.9e-34 149.4 244 39.3
FAN12G0178 Fragaria x ananassa HOM05D003884 ORTHO05D004482 3.9e-34 149.4 244 39.3
PGSC0003DMG400015596 Solanum tuberosum HOM05D003884 ORTHO05D004482 3.9e-34 149.4 224 40.6
Sopen05g002070 Solanum pennellii HOM05D003884 ORTHO05D004482 8.6e-34 148.3 224 40.2
FAN07G1775 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.1e-33 147.9 215 41.4
Nitab4.5_0004033g0080 Nicotiana tabacum HOM05D003884 ORTHO05D004482 1.1e-33 147.9 197 43.7
FAN17G0777 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.5e-33 147.5 244 40.2
SGA_v2.0_scaffold87G27003 Striga asiatica HOM05D003884 ORTHO05D004482 2.5e-33 146.7 204 41.2
Oeu001665.1 Olea europaea HOM05D003884 ORTHO05D004482 3.3e-33 146.4 204 39.7
MSTRG.2381 Avicennia marina HOM05D003884 ORTHO05D004482 5.6e-33 145.6 248 38.3
Lj4g0012912 Lotus japonicus HOM05D003884 ORTHO05D004482 1.2e-32 144.4 263 38.4
PSO478G1563 Papaver somniferum HOM05D003884 ORTHO05D004482 1.6e-32 144.1 218 39.9
CsaV3_5G031830 Cucumis sativus L. HOM05D003884 ORTHO05D004482 3.6e-32 142.9 263 35.0
PSO161G0071 Papaver somniferum HOM05D003884 ORTHO05D004482 3.6e-32 142.9 255 38.8
Hund25320 Selenicereus undatus HOM05D003884 ORTHO05D004482 3.1e-31 139.8 232 39.7
HPP92_017073 Vanilla planifolia HOM05D003884 ORTHO05D004482 5.2e-31 139.0 196 39.8
ATR1149G127 Amborella trichopoda HOM05D003884 ORTHO05D004482 2.0e-30 137.1 241 38.6
Peaxi162Scf00421g00615 Petunia axillaris HOM05D003884 ORTHO05D004482 2.6e-30 136.7 248 39.5
Migut.E00143 Erythranthe guttata HOM05D003884 ORTHO05D004482 7.5e-30 135.2 251 35.9
Aqoxy3G00923 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 1.7e-29 134.0 253 36.4
MBI15_g45678_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 8.3e-29 131.7 180 41.7
Atru.chr11.1968 Acer truncatum HOM05D003884 ORTHO05D004482 1.1e-28 131.3 246 37.8
ClCG05G025070 Citrullus lanatus HOM05D003884 ORTHO05D004482 2.4e-28 130.2 294 32.7
ECA246G1403 Erigeron canadensis HOM05D003884 ORTHO05D004482 2.1e-27 127.1 200 37.0
MBI15_g16616_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 4.6e-27 125.9 180 40.6
TPR.G40428 Trifolium pratense HOM05D003884 ORTHO05D004482 1.3e-26 124.4 70 81.4
Phvul.003G054800 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 1.1e-25 121.3 243 37.4
CDE05G1492 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 2.5e-25 120.2 237 35.0
CSS0008150 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 2.4e-23 113.6 78 70.5
unitig_62.g23678 Utricularia gibba HOM05D003884 ORTHO05D004482 4.0e-23 112.8 198 33.8
Hma1.2p1_0160F.1_g070580 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 5.2e-23 112.5 191 34.6
Lsat_1_v5_gn_3_49121 Lactuca sativa HOM05D003884 ORTHO05D004482 1.5e-22 110.9 221 32.1
CsaV3_5G031870 Cucumis sativus L. HOM05D003884 ORTHO05D004482 7.6e-22 108.6 245 31.0
MELO3C012025.2 Cucumis melo HOM05D003884 ORTHO05D004482 3.8e-21 106.3 258 31.4
Aa31LG1G4430 Aethionema arabicum HOM05D003884 ORTHO05D004482 4.9e-21 105.9 236 32.2
Glyma.18G132900 Glycine max HOM05D003884 ORTHO05D004482 4.9e-21 105.9 245 31.4
CSS0013891 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 1.1e-20 104.8 222 32.9
Cc00_g22770 Coffea canephora HOM05D003884 ORTHO05D004482 1.1e-20 104.8 244 32.0
Nitab4.5_0005722g0050 Nicotiana tabacum HOM05D003884 ORTHO05D004482 1.1e-20 104.8 191 31.4
Nitab4.5_0000257g0220 Nicotiana tabacum HOM05D003884 ORTHO05D004482 1.4e-20 104.4 191 31.4
SGA_v2.0_scaffold8G04247 Striga asiatica HOM05D003884 ORTHO05D004482 1.4e-20 104.4 192 31.2
Dinv30997 Davidia involucrata HOM05D003884 ORTHO05D004482 1.9e-20 104.0 228 32.5
Dinv31106 Davidia involucrata HOM05D003884 ORTHO05D004482 1.9e-20 104.0 228 32.5
TAR629G2251 Trochodendron aralioides HOM05D003884 ORTHO05D004482 1.9e-20 104.0 258 29.5
HPP92_010213 Vanilla planifolia HOM05D003884 ORTHO05D004482 1.9e-20 104.0 254 31.9
CAN.G1160.2 Capsicum annuum HOM05D003884 ORTHO05D004482 2.4e-20 103.6 242 28.9
Ciclev10032870m.g Citrus clementina HOM05D003884 ORTHO05D004482 2.4e-20 103.6 243 32.9
Eucgr.B02560 Eucalyptus grandis HOM05D003884 ORTHO05D004482 2.4e-20 103.6 264 31.4
PSO832G2848 Papaver somniferum HOM05D003884 ORTHO05D004482 2.4e-20 103.6 189 33.9
Phvul.003G055100 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 2.4e-20 103.6 190 33.2
THA.LOC104819574 Tarenaya hassleriana HOM05D003884 ORTHO05D004482 2.4e-20 103.6 189 33.3
Ah.03g132360 Amaranthus hybridus HOM05D003884 ORTHO05D004482 3.2e-20 103.2 266 30.5
Duzib248G1092 Durio zibethinus HOM05D003884 ORTHO05D004482 3.2e-20 103.2 216 31.9
Migut.L01446 Erythranthe guttata HOM05D003884 ORTHO05D004482 3.2e-20 103.2 250 30.0
Gorai.005G185900 Gossypium raimondii HOM05D003884 ORTHO05D004482 3.2e-20 103.2 261 29.9
Sc14g0008540 Simmondsia chinensis HOM05D003884 ORTHO05D004482 3.2e-20 103.2 191 33.5
DCAR_026554 Daucus carota HOM05D003884 ORTHO05D004482 4.2e-20 102.8 190 32.6
Peaxi162Scf00421g00711 Petunia axillaris HOM05D003884 ORTHO05D004482 4.2e-20 102.8 191 31.4
Gohir.A03G142500 Gossypium hirsutum HOM05D003884 ORTHO05D004482 7.1e-20 102.1 261 29.9
Lalb_Chr05g0228011 Lupinus albus HOM05D003884 ORTHO05D004482 7.1e-20 102.1 261 29.1
Oeu001657.1 Olea europaea HOM05D003884 ORTHO05D004482 7.1e-20 102.1 245 31.0
Atru.chr11.1961 Acer truncatum HOM05D003884 ORTHO05D004482 9.2e-20 101.7 259 31.3
CDE10G0847 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 9.2e-20 101.7 222 31.1
Rhsim12G0124300 Rhododendron simsii HOM05D003884 ORTHO05D004482 9.2e-20 101.7 207 32.9
arahy.Tifrunner.gnm1.ann1.FXM0G0 Arachis hypogaea HOM05D000677 ORTHO05D000727 1.2e-19 101.3 226 32.7
arahy.Tifrunner.gnm1.ann1.W247EX Arachis hypogaea HOM05D003884 ORTHO05D004482 1.2e-19 101.3 239 32.6
MSTRG.622 Avicennia marina HOM05D003884 ORTHO05D004482 1.2e-19 101.3 191 32.5
ClCG05G025040 Citrullus lanatus HOM05D003884 ORTHO05D004482 1.2e-19 101.3 245 30.6
PSO063G2462 Papaver somniferum HOM05D003884 ORTHO05D004482 1.2e-19 101.3 223 31.4
PGR102G1298 Punica granatum HOM05D003884 ORTHO05D004482 1.2e-19 101.3 265 31.7
PGSC0003DMG400015599 Solanum tuberosum HOM05D003884 ORTHO05D004482 1.2e-19 101.3 191 31.9
Nn4g22884 Nelumbo nucifera HOM05D003884 ORTHO05D004482 1.6e-19 100.9 222 31.5
Sopen05g002130 Solanum pennellii HOM05D003884 ORTHO05D004482 1.6e-19 100.9 191 31.9
AUR62039407 Chenopodium quinoa HOM05D003884 ORTHO05D004482 2.1e-19 100.5 191 32.5
Thhalv10008855m.g Eutrema salsugineum HOM05D003884 ORTHO05D004482 2.7e-19 100.1 189 33.3
FvH4_4g35001 Fragaria vesca HOM05D003884 ORTHO05D004482 2.7e-19 100.1 253 30.8
Lj4g0002760 Lotus japonicus HOM05D003884 ORTHO05D004482 2.7e-19 100.1 189 32.3
VMungo0251G2950 Vigna mungo HOM05D003884 ORTHO05D004482 2.7e-19 100.1 266 29.7
Carub.0001s0996 Capsella rubella HOM05D003884 ORTHO05D004482 3.5e-19 99.8 189 32.8
CDE10G0415 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 4.6e-19 99.4 222 30.2
Gohir.D02G165800 Gossypium hirsutum HOM05D003884 ORTHO05D004482 4.6e-19 99.4 261 29.5
vmacro16279 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 4.6e-19 99.4 265 31.7
EL10Ac4g10087 Beta vulgaris HOM05D003884 ORTHO05D004482 7.8e-19 98.6 260 31.2
CARHR010670 Cardamine hirsuta HOM05D003884 ORTHO05D004482 7.8e-19 98.6 189 32.8
Solyc05g006110.3 Solanum lycopersicum HOM05D003884 ORTHO05D004482 7.8e-19 98.6 240 29.6
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.3e-18 97.8 225 30.7
Sp1g09160 Schrenkiella parvula HOM05D003884 ORTHO05D004482 1.3e-18 97.8 189 32.3
EL10Ac6g13616 Beta vulgaris HOM05D000625 ORTHO05D000467 1.7e-18 97.4 196 34.7
RcHm_v2.0_Chr4g0444531 Rosa chinensis HOM05D003884 ORTHO05D004482 1.7e-18 97.4 247 30.4
FAN12G1036 Fragaria x ananassa HOM05D003884 ORTHO05D004482 2.3e-18 97.1 253 30.4
PGR119G0467 Punica granatum HOM05D003884 ORTHO05D004482 2.3e-18 97.1 220 30.0
ATR1149G058 Amborella trichopoda HOM05D003884 ORTHO05D004482 3.0e-18 96.7 190 32.6
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 3.0e-18 96.7 206 31.6
Sed0006672 Sechium edule HOM05D003884 ORTHO05D004482 3.0e-18 96.7 189 31.7
Actinidia08183 Actinidia chinensis HOM05D003884 ORTHO05D004482 3.9e-18 96.3 189 31.7
AT1G10522 Arabidopsis thaliana HOM05D003884 ORTHO05D004482 3.9e-18 96.3 189 32.8
CiPaw.05G146300 Carya illinoinensis HOM05D003884 ORTHO05D004482 3.9e-18 96.3 234 29.9
Lj3A1049T56 Lonicera japonica HOM05D003884 ORTHO05D004482 3.9e-18 96.3 203 31.0
MD16G1086800 Malus domestica HOM05D003884 ORTHO05D004482 3.9e-18 96.3 252 29.8
BcaC05g24871 Brassica carinata HOM05D003884 ORTHO05D004482 5.1e-18 95.9 235 31.1
C05p08810 Brassica napus HOM05D003884 ORTHO05D004482 5.1e-18 95.9 235 31.1
BolC5t29627H Brassica oleracea HOM05D003884 ORTHO05D004482 5.1e-18 95.9 235 31.1
MD13G1086700 Malus domestica HOM05D003884 ORTHO05D004482 5.1e-18 95.9 252 30.6
AL1G21330 Arabidopsis lyrata HOM05D003884 ORTHO05D004482 8.7e-18 95.1 273 29.3
Cpa.g.sc5.349 Carica papaya HOM05D003884 ORTHO05D004482 8.7e-18 95.1 262 29.8
ECA238G2328 Erigeron canadensis HOM05D003884 ORTHO05D004482 8.7e-18 95.1 185 31.4
FAN07G1004 Fragaria x ananassa HOM05D003884 ORTHO05D004482 8.7e-18 95.1 253 30.8
Medtr8g063150 Medicago truncatula HOM05D003884 ORTHO05D004482 8.7e-18 95.1 241 30.7
Thecc.02G242500 Theobroma cacao HOM05D003884 ORTHO05D004482 1.1e-17 94.7 245 29.4
Haze_12138 Corylus avellana HOM05D003884 ORTHO05D004482 1.5e-17 94.4 206 31.6
Nn3g16971 Nelumbo nucifera HOM05D003884 ORTHO05D004482 1.5e-17 94.4 84 61.9
Prupe.1G259800 Prunus persica HOM05D003884 ORTHO05D004482 1.5e-17 94.4 259 28.6
TWI36G1174 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 1.5e-17 94.4 202 30.2
A06p07300 Brassica napus HOM05D003884 ORTHO05D004482 1.9e-17 94.0 235 31.1
BraA06t23935Z Brassica rapa HOM05D003884 ORTHO05D004482 1.9e-17 94.0 235 31.1
AUR62005315 Chenopodium quinoa HOM05D003884 ORTHO05D004482 2.5e-17 93.6 118 49.2
BcaC05g24933 Brassica carinata HOM05D003884 ORTHO05D004482 3.3e-17 93.2 249 30.9
Actinidia27769 Actinidia chinensis HOM05D003884 ORTHO05D004482 4.3e-17 92.8 190 31.6
Potri.010G094900 Populus trichocarpa HOM05D003884 ORTHO05D004482 4.3e-17 92.8 189 31.2
COL.COLO4_38097 Corchorus olitorius HOM05D003884 ORTHO05D004482 5.6e-17 92.4 252 31.3
Aqoxy3G03081 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 9.6e-17 91.7 245 29.4
Ca_22779_v3 Cicer arietinum L. HOM05D003884 ORTHO05D004482 1.6e-16 90.9 228 30.7
Manes.05G090800 Manihot esculenta HOM05D003884 ORTHO05D004482 2.1e-16 90.5 276 30.1
MD16G1087000 Malus domestica HOM05D003884 ORTHO05D004482 4.7e-16 89.4 60 65.0
GSVIVG01020172001 Vitis vinifera HOM05D003884 ORTHO05D004482 4.7e-16 89.4 223 30.5
Lalb_Chr05g0217181 Lupinus albus HOM05D003884 ORTHO05D004482 8.1e-16 88.6 86 57.0
MBI15_g14835_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 8.1e-16 88.6 58 65.5
Psat4g126120 Pisum sativum HOM05D003884 ORTHO05D004482 8.1e-16 88.6 238 29.4
Sabra10G0067200 Salix brachista HOM05D003884 ORTHO05D004482 8.1e-16 88.6 237 29.1
CANSAT11G1742 Cannabis sativa HOM05D003884 ORTHO05D004482 1.8e-15 87.4 273 27.8
Cc11_g14300 Coffea canephora HOM05D003884 ORTHO05D004482 1.8e-15 87.4 112 46.4
CSS0019058 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 5.3e-15 85.9 136 44.9
RcHm_v2.0_Chr4g0444421 Rosa chinensis HOM05D003884 ORTHO05D004482 6.9e-15 85.5 97 49.5
QL03p062483 Quercus lobata HOM05D003884 ORTHO05D004482 1.2e-14 84.7 189 27.5
TPR.G36109 Trifolium pratense HOM05D003884 ORTHO05D004482 1.2e-14 84.7 98 51.0
Zm00001eb098980 Zea mays HOM05D003884 ORTHO05D004482 1.2e-14 84.7 242 27.3
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 1.5e-14 84.3 65 55.4
TPR.G35986 Trifolium pratense HOM05D003884 ORTHO05D004482 2.6e-14 83.6 59 61.0
Os09g0382400 Oryza sativa ssp. japonica HOM05D003884 ORTHO05D004482 5.8e-14 82.4 243 26.7
SalBow2G1244 Salvia bowleyana HOM05D003884 ORTHO05D004482 1.3e-13 81.3 55 63.6
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 1.3e-13 81.3 55 63.6
MD13G1087300 Malus domestica HOM05D003884 ORTHO05D004482 2.2e-13 80.5 83 54.2
Oeu001664.1 Olea europaea HOM05D003884 ORTHO05D004482 4.9e-13 79.3 64 56.2
CAN.G1248.1 Capsicum annuum HOM05D003884 ORTHO05D004482 6.4e-13 79.0 93 49.5
Medtr2g099400 Medicago truncatula HOM05D000001 ORTHO05D011365 9.3e-12 75.1 52 57.7
vmacro16296 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 3.9e-10 69.7 47 68.1
HanXRQChr15g0476661 Helianthus annuus HOM05D003884 ORTHO05D004482 5.6e-09 65.9 118 40.7


User provided reference genes

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