Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p059196 Quercus lobata HOM05D004907 ORTHO05D005707 8.8e-226 786.6 381 100.0
Haze_12215 Corylus avellana HOM05D004907 ORTHO05D005707 6.9e-154 547.7 374 69.3
Cfa009181 Carpinus fangiana HOM05D004907 ORTHO05D005707 1.6e-150 536.6 375 67.7
CiPaw.05G186900 Carya illinoinensis HOM05D004907 ORTHO05D005707 3.9e-141 505.4 367 65.4
Cfa009182 Carpinus fangiana HOM05D004907 ORTHO05D005707 7.4e-140 501.1 372 63.2
CiPaw.06G069900 Carya illinoinensis HOM05D004907 ORTHO05D005707 3.8e-136 488.8 381 64.3
Prupe.1G249900 Prunus persica HOM05D004907 ORTHO05D005707 2.8e-131 472.6 383 61.4
Manes.13G027600 Manihot esculenta HOM05D004907 ORTHO05D005707 6.3e-123 444.9 369 57.2
Duzib268G1138 Durio zibethinus HOM05D004907 ORTHO05D005707 2.4e-122 443.0 379 56.7
Thecc.02G254700 Theobroma cacao HOM05D004907 ORTHO05D005707 1.3e-120 437.2 377 56.0
RcHm_v2.0_Chr4g0441991 Rosa chinensis HOM05D004907 ORTHO05D005707 2.5e-119 433.0 376 56.1
MD13G1095300 Malus domestica HOM05D004907 ORTHO05D005707 4.2e-119 432.2 365 57.8
MD16G1096400 Malus domestica HOM05D004907 ORTHO05D005707 1.0e-117 427.6 364 58.8
CANSAT01G1025 Cannabis sativa HOM05D004907 ORTHO05D005707 1.4e-117 427.2 373 56.3
FAN22G1867 Fragaria x ananassa HOM05D004907 ORTHO05D005707 3.9e-117 425.6 368 57.6
FAN07G1203 Fragaria x ananassa HOM05D004907 ORTHO05D005707 6.7e-117 424.9 371 56.6
Hma1.2p1_0160F.1_g071120 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 1.5e-116 423.7 373 55.0
FAN12G3344 Fragaria x ananassa HOM05D004907 ORTHO05D005707 9.7e-116 421.0 372 57.0
FvH4_4g32970 Fragaria vesca HOM05D004907 ORTHO05D005707 2.8e-115 419.5 372 56.7
FAN17G0584 Fragaria x ananassa HOM05D004907 ORTHO05D005707 3.7e-115 419.1 364 56.9
MD16G1096500 Malus domestica HOM05D004907 ORTHO05D005707 4.8e-115 418.7 360 58.1
Gohir.D02G160600 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.8e-114 416.8 371 53.6
Haze_12216 Corylus avellana HOM05D004907 ORTHO05D005707 2.4e-114 416.4 372 54.6
Lj6P808T27 Lonicera japonica HOM05D004907 ORTHO05D005707 5.3e-114 415.2 366 54.4
CAN.G728.4 Capsicum annuum HOM05D004907 ORTHO05D005707 1.5e-113 413.7 368 53.0
CSS0001528 Camellia sinensis var. sinensis HOM05D004907 ORTHO05D005707 3.4e-113 412.5 370 56.2
TAR374G1110 Trochodendron aralioides HOM05D004907 ORTHO05D005707 1.0e-112 411.0 370 53.0
Nitab4.5_0000338g0040 Nicotiana tabacum HOM05D004907 ORTHO05D005707 2.2e-112 409.8 368 53.8
Nitab4.5_0015209g0010 Nicotiana tabacum HOM05D004907 ORTHO05D005707 3.8e-112 409.1 368 53.8
PGR119G0630 Punica granatum HOM05D004907 ORTHO05D005707 1.9e-111 406.8 369 52.3
PGSC0003DMG400013488 Solanum tuberosum HOM05D004907 ORTHO05D005707 1.9e-111 406.8 368 53.5
DCAR_007072 Daucus carota HOM05D004907 ORTHO05D005707 4.2e-111 405.6 367 53.1
Sopen05g001160 Solanum pennellii HOM05D004907 ORTHO05D005707 4.2e-111 405.6 367 54.0
Duzib268G1696 Durio zibethinus HOM05D004907 ORTHO05D005707 1.6e-110 403.7 365 52.1
Gohir.D01G149900 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.6e-110 403.7 369 51.8
Gorai.002G186000 Gossypium raimondii HOM05D004907 ORTHO05D005707 2.7e-110 402.9 369 51.8
Gohir.A05G313700 Gossypium hirsutum HOM05D004907 ORTHO05D005707 3.6e-110 402.5 370 51.1
Rhsim12G0042700 Rhododendron simsii HOM05D004907 ORTHO05D005707 1.4e-109 400.6 374 54.0
Sc04g0009300 Simmondsia chinensis HOM05D004907 ORTHO05D005707 3.9e-109 399.1 368 52.4
Hma1.2p1_0223F.1_g094330 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 5.1e-109 398.7 378 53.4
Atru.chr11.2072 Acer truncatum HOM05D004907 ORTHO05D005707 6.7e-109 398.3 348 57.2
Gohir.A03G137500 Gossypium hirsutum HOM05D004907 ORTHO05D005707 6.7e-109 398.3 371 51.2
ClCG05G025500 Citrullus lanatus HOM05D004907 ORTHO05D005707 2.0e-108 396.7 378 52.6
Psat5g210760 Pisum sativum HOM05D004907 ORTHO05D005707 2.0e-108 396.7 374 53.7
VMungo1215G1811 Vigna mungo HOM05D004907 ORTHO05D005707 2.0e-108 396.7 373 53.6
Ciclev10031561m.g Citrus clementina HOM05D004907 ORTHO05D005707 2.6e-108 396.4 371 54.7
Solyc05g005150.1 Solanum lycopersicum HOM05D004907 ORTHO05D005707 3.3e-108 396.0 367 52.6
Lsat_1_v5_gn_3_28580 Lactuca sativa HOM05D004907 ORTHO05D005707 7.4e-108 394.8 366 53.0
Glyma.08G284600 Glycine max HOM05D004907 ORTHO05D005707 3.7e-107 392.5 371 54.7
Ca_03137_v3 Cicer arietinum L. HOM05D004907 ORTHO05D005707 1.1e-106 391.0 372 53.5
Gorai.005G180700 Gossypium raimondii HOM05D004907 ORTHO05D005707 1.2e-105 387.5 371 50.4
Cc11_g15390 Coffea canephora HOM05D004907 ORTHO05D005707 1.5e-105 387.1 372 51.6
Gorai.009G337200 Gossypium raimondii HOM05D004907 ORTHO05D005707 1.5e-105 387.1 376 50.0
Lj2g0022644 Lotus japonicus HOM05D004907 ORTHO05D005707 1.3e-104 384.0 365 54.0
Potri.010G042900 Populus trichocarpa HOM05D004907 ORTHO05D005707 1.7e-104 383.6 398 49.5
Lj4g0000696 Lotus japonicus HOM05D004907 ORTHO05D005707 6.5e-104 381.7 374 53.7
Glyma.01G028800 Glycine max HOM05D004907 ORTHO05D005707 8.5e-104 381.3 369 52.0
Lalb_Chr05g0216711 Lupinus albus HOM05D004907 ORTHO05D005707 8.5e-104 381.3 358 55.0
Eucgr.H02548 Eucalyptus grandis HOM05D004907 ORTHO05D005707 1.4e-103 380.6 375 51.2
Glyma.18G141000 Glycine max HOM05D004907 ORTHO05D005707 4.2e-103 379.0 376 52.7
Glyma.02G036400 Glycine max HOM05D004907 ORTHO05D005707 7.2e-103 378.3 370 51.9
PGR102G3060 Punica granatum HOM05D004907 ORTHO05D005707 1.2e-102 377.5 379 50.1
Eucgr.H02549 Eucalyptus grandis HOM05D004907 ORTHO05D005707 1.6e-102 377.1 374 51.3
Oeu001729.1 Olea europaea HOM05D004907 ORTHO05D005707 3.6e-102 375.9 367 50.7
Phvul.003G062300 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 3.0e-101 372.9 364 52.5
Sabra10G0024600 Salix brachista HOM05D004907 ORTHO05D005707 3.9e-101 372.5 396 49.2
CsaV3_5G031400 Cucumis sativus L. HOM05D004907 ORTHO05D005707 4.4e-100 369.0 375 50.1
MSTRG.7910 Avicennia marina HOM05D004907 ORTHO05D005707 5.7e-100 368.6 375 49.3
TPR.G24774 Trifolium pratense HOM05D004907 ORTHO05D005707 7.4e-100 368.2 385 50.4
AUR62014077 Chenopodium quinoa HOM05D004907 ORTHO05D005707 3.7e-99 365.9 370 48.6
MELO3C011980.2 Cucumis melo HOM05D004907 ORTHO05D005707 1.1e-98 364.4 375 49.3
Medtr8g069800 Medicago truncatula HOM05D004907 ORTHO05D005707 1.6e-97 360.5 375 50.4
Psat2g106360 Pisum sativum HOM05D004907 ORTHO05D005707 4.5e-97 359.0 344 54.1
Lsat_1_v5_gn_8_154601 Lactuca sativa HOM05D004907 ORTHO05D005707 7.7e-97 358.2 365 48.2
Medtr5g033880 Medicago truncatula HOM05D004907 ORTHO05D005707 1.0e-96 357.8 376 50.3
Medtr5g043750 Medicago truncatula HOM05D004907 ORTHO05D005707 1.7e-96 357.1 376 50.3
AUR62005416 Chenopodium quinoa HOM05D004907 ORTHO05D005707 2.9e-96 356.3 367 47.4
Nn4g22709 Nelumbo nucifera HOM05D004907 ORTHO05D005707 5.0e-96 355.5 379 48.0
Rhsim12G0113900 Rhododendron simsii HOM05D004907 ORTHO05D005707 1.2e-94 350.9 373 48.5
Actinidia27794 Actinidia chinensis HOM05D004907 ORTHO05D005707 5.2e-93 345.5 367 48.0
TWI36G0219 Tripterygium wilfordii HOM05D004907 ORTHO05D005707 1.5e-92 344.0 381 49.1
Migut.L01466 Erythranthe guttata HOM05D004907 ORTHO05D005707 2.0e-92 343.6 378 48.7
HanXRQChr06g0173591 Helianthus annuus HOM05D004907 ORTHO05D005707 3.4e-92 342.8 375 48.3
Gohir.A01G160100 Gossypium hirsutum HOM05D004907 ORTHO05D005707 3.7e-91 339.3 303 52.1
PSO782G1891 Papaver somniferum HOM05D004907 ORTHO05D005707 4.8e-91 339.0 370 45.1
MSTRG.2405 Avicennia marina HOM05D004907 ORTHO05D005707 8.3e-91 338.2 372 49.2
Oeu056415.1 Olea europaea HOM05D004907 ORTHO05D005707 4.5e-89 332.4 370 45.1
PSO063G4965 Papaver somniferum HOM05D004907 ORTHO05D005707 7.7e-89 331.6 373 44.8
PSO144G0054 Papaver somniferum HOM05D004907 ORTHO05D005707 8.5e-88 328.2 370 44.9
SalBow2G1155 Salvia bowleyana HOM05D004907 ORTHO05D005707 4.2e-87 325.9 370 46.8
Sed0025966 Sechium edule HOM05D002061 ORTHO05D005707 5.5e-87 325.5 381 44.9
Sed0027759 Sechium edule HOM05D004907 ORTHO05D005707 1.2e-86 324.3 363 45.5
Thecc.02G254800 Theobroma cacao HOM05D004907 ORTHO05D005707 1.6e-86 323.9 375 45.1
SalBow3G2985 Salvia bowleyana HOM05D004907 ORTHO05D005707 4.7e-86 322.4 372 46.5
PSO170G6868 Papaver somniferum HOM05D004907 ORTHO05D005707 8.0e-86 321.6 382 43.2
PSO441G0001 Papaver somniferum HOM05D004907 ORTHO05D005707 8.0e-86 321.6 382 43.2
Phvul.002G064500 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 4.4e-84 315.8 244 61.1
Aqoxy3G02876 Aquilegia oxysepala HOM05D004907 ORTHO05D005707 9.8e-84 314.7 368 44.0
Oeu056417.1 Olea europaea HOM05D004907 ORTHO05D005707 2.2e-83 313.5 377 44.0
ClCG08G017860 Citrullus lanatus HOM05D002061 ORTHO05D005707 4.1e-82 309.3 391 46.8
PSO170G1656 Papaver somniferum HOM05D004907 ORTHO05D005707 9.1e-82 308.1 374 40.9
THA.LOC104822976 Tarenaya hassleriana HOM05D004907 ORTHO05D005707 9.1e-82 308.1 371 45.0
Dinv15270 Davidia involucrata HOM05D004907 ORTHO05D005707 2.7e-81 306.6 275 55.3
COL.COLO4_24215 Corchorus olitorius HOM05D004907 ORTHO05D005707 1.7e-80 303.9 267 52.1
GSVIVG01013786001 Vitis vinifera HOM05D004907 ORTHO05D005707 3.3e-79 299.7 268 51.5
Lalb_Chr09g0326261 Lupinus albus HOM05D004907 ORTHO05D005707 1.4e-77 294.3 362 45.3
C05p22690 Brassica napus HOM05D004907 ORTHO05D005707 1.8e-77 293.9 377 41.9
BolC5t30967H Brassica oleracea HOM05D004907 ORTHO05D005707 2.3e-77 293.5 377 41.9
AT1G23390 Arabidopsis thaliana HOM05D004907 ORTHO05D005707 3.0e-77 293.1 371 43.1
BraA09t39619Z Brassica rapa HOM05D004907 ORTHO05D005707 5.2e-77 292.4 378 41.5
A09p41240 Brassica napus HOM05D004907 ORTHO05D005707 8.9e-77 291.6 377 41.6
Hund25371 Selenicereus undatus HOM05D004907 ORTHO05D005707 4.4e-76 289.3 364 41.2
BcaB07g32334 Brassica carinata HOM05D004907 ORTHO05D005707 9.8e-76 288.1 373 41.8
Thhalv10007835m.g Eutrema salsugineum HOM05D004907 ORTHO05D005707 9.8e-76 288.1 388 40.5
Oeu055460.1 Olea europaea HOM05D004907 ORTHO05D005707 9.8e-76 288.1 377 43.2
BcaC05g26256 Brassica carinata HOM05D004907 ORTHO05D005707 1.3e-75 287.7 373 41.6
Gohir.D05G315200 Gossypium hirsutum HOM05D004907 ORTHO05D005707 6.3e-75 285.4 236 58.5
CARHR023830 Cardamine hirsuta HOM05D004907 ORTHO05D005707 8.3e-75 285.0 371 42.0
AL1G37180 Arabidopsis lyrata HOM05D004907 ORTHO05D005707 5.4e-74 282.3 374 41.2
Sp1g20830 Schrenkiella parvula HOM05D004907 ORTHO05D005707 3.5e-73 279.6 373 41.3
Ah.03g132850 Amaranthus hybridus HOM05D000168 ORTHO05D000811 1.0e-72 278.1 328 44.2
SGA_v2.0_scaffold63G21708 Striga asiatica HOM05D004907 ORTHO05D005707 1.3e-72 277.7 373 42.9
Aa31LG7G7420 Aethionema arabicum HOM05D004907 ORTHO05D005707 1.1e-71 274.6 367 40.6
Carub.0001s2297 Capsella rubella HOM05D004907 ORTHO05D005707 1.4e-69 267.7 374 40.1
Peaxi162Scf00158g00003 Petunia axillaris HOM05D004907 ORTHO05D005707 2.3e-69 266.9 268 47.4
Actinidia08149 Actinidia chinensis HOM05D004907 ORTHO05D005707 5.4e-66 255.8 262 48.9
CDE06G1150 Ceratophyllum demersum HOM05D004907 ORTHO05D005707 3.5e-65 253.1 321 38.3
Oeu056728.1 Olea europaea HOM05D004907 ORTHO05D005707 1.1e-63 248.1 288 45.5
ATR1091G111 Amborella trichopoda HOM05D004907 ORTHO05D005707 3.7e-59 233.0 365 36.7
EL10Ac6g13709 Beta vulgaris HOM05D004907 ORTHO05D005707 2.3e-56 223.8 226 48.2
PSO357G0455 Papaver somniferum HOM05D004907 ORTHO05D005707 1.5e-52 211.1 218 47.2
PSO478G2945 Papaver somniferum HOM05D004907 ORTHO05D005707 2.9e-51 206.8 178 56.2
COL.COLO4_24217 Corchorus olitorius HOM05D004907 ORTHO05D005707 6.2e-46 189.1 209 44.0
MD13G1280300 Malus domestica HOM05D004907 ORTHO05D005707 1.5e-44 184.5 189 51.9
Nn3g16812 Nelumbo nucifera HOM05D004907 ORTHO05D005707 8.1e-38 162.2 190 47.4
Zm00001eb155550 Zea mays HOM05D004907 ORTHO05D005707 7.6e-36 155.6 387 31.8
HPP92_008048 Vanilla planifolia HOM05D004907 ORTHO05D005707 9.9e-36 155.2 348 32.5
Cfa009183 Carpinus fangiana HOM05D004907 ORTHO05D005707 1.3e-35 154.8 132 57.6
TPR.G21504 Trifolium pratense HOM05D004907 ORTHO05D005707 3.5e-33 146.7 158 48.7
Os09g0292900 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 3.3e-31 140.2 391 29.7
Mapoly0119s0024 Marchantia polymorpha HOM05D007853 ORTHO05D009873 1.5e-28 131.3 345 29.0
unitig_8.g2924 Utricularia gibba HOM05D004907 ORTHO05D005707 2.3e-24 117.5 114 51.8
Dinv04666 Davidia involucrata HOM05D007853 ORTHO05D009873 1.5e-23 114.8 371 26.1
CAN.G771.60 Capsicum annuum HOM05D007853 ORTHO05D009873 3.7e-22 110.2 348 25.6
Oeu015462.1 Olea europaea HOM05D007853 ORTHO05D009873 3.7e-22 110.2 369 24.9
Os02g0465600 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 3.7e-22 110.2 342 26.9
TPR.G15291 Trifolium pratense HOM05D007853 ORTHO05D009873 2.4e-21 107.5 371 25.9
Os01g0704300 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 6.9e-21 105.9 263 31.9
A07p07510 Brassica napus HOM05D007853 ORTHO05D009873 7.6e-20 102.4 341 26.7
BraA07t28542Z Brassica rapa HOM05D007853 ORTHO05D009873 7.6e-20 102.4 341 26.7
Psat3g143800 Pisum sativum HOM05D007853 ORTHO05D009873 7.6e-20 102.4 377 26.0
Medtr0197s0070 Medicago truncatula HOM05D007853 ORTHO05D009873 6.5e-19 99.4 341 25.8
Medtr7g059040 Medicago truncatula HOM05D007853 ORTHO05D009873 6.5e-19 99.4 341 25.8
Mapoly0119s0021 Marchantia polymorpha HOM05D007853 ORTHO05D009873 1.1e-18 98.6 331 24.2
Nn2g13938 Nelumbo nucifera HOM05D004907 ORTHO05D005707 1.1e-18 98.6 91 53.8
Thhalv10002571m.g Eutrema salsugineum HOM05D007853 ORTHO05D009873 4.2e-18 96.7 339 26.5
BcaC06g35750 Brassica carinata HOM05D007853 ORTHO05D009873 7.1e-18 95.9 340 26.5
BolC7t41605H Brassica oleracea HOM05D007853 ORTHO05D009873 7.1e-18 95.9 340 26.5
Pp3c2_14180 Physcomitrium patens HOM05D007853 ORTHO05D009873 7.1e-18 95.9 331 25.7
unitig_8.g2923 Utricularia gibba HOM05D004907 ORTHO05D005707 9.3e-18 95.5 85 50.6
Manes.12G041900 Manihot esculenta HOM05D007853 ORTHO05D009873 1.2e-17 95.1 351 23.9
C07p11280 Brassica napus HOM05D007853 ORTHO05D009873 1.6e-17 94.7 340 26.2
Nn2g13937 Nelumbo nucifera HOM05D004907 ORTHO05D005707 3.5e-17 93.6 79 53.2
Sp3g22500 Schrenkiella parvula HOM05D007853 ORTHO05D009873 3.5e-17 93.6 339 25.7
Pp3c10_6380 Physcomitrium patens HOM05D007853 ORTHO05D009873 4.6e-17 93.2 288 26.7
RcHm_v2.0_Chr6g0285141 Rosa chinensis HOM05D007853 ORTHO05D009873 4.6e-17 93.2 347 24.5
Ca_07539_v3 Cicer arietinum L. HOM05D007853 ORTHO05D009873 7.9e-17 92.4 332 26.2
AL3G40490 Arabidopsis lyrata HOM05D007853 ORTHO05D009873 1.3e-16 91.7 360 24.2
SEGI_08843 Sequoiadendron giganteum HOM05D007853 ORTHO05D009873 1.8e-16 91.3 215 29.3
AT3G24760 Arabidopsis thaliana HOM05D007853 ORTHO05D009873 2.3e-16 90.9 337 24.9
BcaB06g26693 Brassica carinata HOM05D007853 ORTHO05D009873 3.0e-16 90.5 337 24.3
PGR044G1509 Punica granatum HOM05D007853 ORTHO05D009873 1.1e-15 88.6 358 25.1
Phvul.008G123400 Phaseolus vulgaris HOM05D007853 ORTHO05D009873 3.3e-15 87.0 350 22.0
Carub.0003s2515 Capsella rubella HOM05D007853 ORTHO05D009873 9.6e-15 85.5 344 24.7
CiPaw.03G151300 Carya illinoinensis HOM05D007853 ORTHO05D009873 8.2e-14 82.4 378 23.8
TPR.G18320 Trifolium pratense HOM05D004907 ORTHO05D005707 2.1e-09 67.8 102 38.2
CiPaw.11G008800 Carya illinoinensis HOM05D004907 ORTHO05D005707 2.7e-09 67.4 52 57.7
Pp3c19_15800 Physcomitrium patens HOM05D007753 ORTHO05D009385 3.0e-08 63.9 346 22.3


User provided reference genes

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