Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p046047 Quercus lobata HOM05D000319 ORTHO05D005616 2.3e-60 235.3 115 100.0
Atru.chr5.1559 Acer truncatum HOM05D000319 ORTHO05D005616 8.7e-36 153.7 97 78.4
BolC9t53140H Brassica oleracea HOM05D000319 ORTHO05D005616 8.7e-36 153.7 97 81.4
BcaB01g02475 Brassica carinata HOM05D000319 ORTHO05D005616 1.5e-35 152.9 97 81.4
TWI18G1113 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 1.5e-35 152.9 97 78.4
Oeu058801.1 Olea europaea HOM05D000113 ORTHO05D010194 3.3e-35 151.8 97 80.4
GSVIVG01000718001 Vitis vinifera HOM05D000319 ORTHO05D005616 3.3e-35 151.8 97 77.3
A09p02000 Brassica napus HOM05D000319 ORTHO05D000903 5.6e-35 151.0 91 82.4
BraA09t35850Z Brassica rapa HOM05D000319 ORTHO05D000903 5.6e-35 151.0 91 82.4
Gorai.004G056700 Gossypium raimondii HOM05D000319 ORTHO05D005616 5.6e-35 151.0 97 79.4
BcaC04g23998 Brassica carinata HOM05D000319 ORTHO05D000903 7.4e-35 150.6 91 82.4
C09p02100 Brassica napus HOM05D000319 ORTHO05D000903 7.4e-35 150.6 91 82.4
COL.COLO4_06081 Corchorus olitorius HOM05D000319 ORTHO05D005616 7.4e-35 150.6 97 77.3
Sp6g02490 Schrenkiella parvula HOM05D000319 ORTHO05D005616 7.4e-35 150.6 97 79.4
Carub.0006s3456 Capsella rubella HOM05D000319 ORTHO05D005616 9.6e-35 150.2 97 79.4
Cpa.g.sc52.96 Carica papaya HOM05D000319 ORTHO05D005616 9.6e-35 150.2 97 78.4
MD17G1215900 Malus domestica HOM05D000319 ORTHO05D005616 9.6e-35 150.2 97 77.3
Potri.002G045200 Populus trichocarpa HOM05D000319 ORTHO05D005616 9.6e-35 150.2 97 78.4
TWI75G0800 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 9.6e-35 150.2 97 76.3
A03p30990 Brassica napus HOM05D000319 ORTHO05D000903 1.3e-34 149.8 91 82.4
Gohir.A08G045400 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.3e-34 149.8 97 78.4
Gohir.D08G055800 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.3e-34 149.8 97 78.4
AL6G50470 Arabidopsis lyrata HOM05D000319 ORTHO05D005616 1.6e-34 149.4 97 79.4
Ciclev10021811m.g Citrus clementina HOM05D000319 ORTHO05D005616 1.6e-34 149.4 96 79.2
Dinv22483 Davidia involucrata HOM05D000319 ORTHO05D005616 1.6e-34 149.4 97 77.3
Nn1g02549 Nelumbo nucifera HOM05D000319 ORTHO05D005616 1.6e-34 149.4 91 81.3
Prupe.3G092100 Prunus persica HOM05D000319 ORTHO05D005616 1.6e-34 149.4 97 78.4
THA.LOC104801256 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 1.6e-34 149.4 97 76.3
BcaB01g02030 Brassica carinata HOM05D000319 ORTHO05D005616 2.1e-34 149.1 91 81.3
BraA03t12276Z Brassica rapa HOM05D000319 ORTHO05D000903 2.1e-34 149.1 91 81.3
Thhalv10028900m.g Eutrema salsugineum HOM05D000319 ORTHO05D005616 2.1e-34 149.1 97 79.4
Hma1.2p1_0760F.1_g214240 Hydrangea macrophylla HOM05D000319 ORTHO05D005616 2.1e-34 149.1 97 78.4
MD17G1216000 Malus domestica HOM05D000319 ORTHO05D005616 2.1e-34 149.1 97 77.3
Cfa008743 Carpinus fangiana HOM05D000319 ORTHO05D005616 2.8e-34 148.7 97 79.4
Dinv34565 Davidia involucrata HOM05D000319 ORTHO05D005616 2.8e-34 148.7 91 80.2
MSTRG.18283 Avicennia marina HOM05D000319 ORTHO05D005616 3.7e-34 148.3 96 79.2
CSS0020063 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 3.7e-34 148.3 97 78.4
BolC3t16066H Brassica oleracea HOM05D000319 ORTHO05D005616 4.8e-34 147.9 97 79.4
CARHR250870 Cardamine hirsuta HOM05D000319 ORTHO05D005616 4.8e-34 147.9 97 78.4
PGR044G1796 Punica granatum HOM05D000319 ORTHO05D005616 4.8e-34 147.9 97 77.3
BcaC01g06747 Brassica carinata HOM05D000319 ORTHO05D000903 6.2e-34 147.5 91 81.3
C03p37760 Brassica napus HOM05D000319 ORTHO05D005616 6.2e-34 147.5 91 81.3
Aqoxy5G00356 Aquilegia oxysepala HOM05D000319 ORTHO05D005616 8.1e-34 147.1 91 78.0
AT4G02580 Arabidopsis thaliana HOM05D000319 ORTHO05D005616 8.1e-34 147.1 97 78.4
arahy.Tifrunner.gnm1.ann1.0F4L5T Arachis hypogaea HOM05D000319 ORTHO05D005616 8.1e-34 147.1 97 76.3
Ca_01047_v3 Cicer arietinum L. HOM05D000319 ORTHO05D005616 8.1e-34 147.1 97 77.3
Duzib211G0655 Durio zibethinus HOM05D000319 ORTHO05D005616 1.1e-33 146.7 97 76.3
Lalb_Chr22g0350801 Lupinus albus HOM05D000319 ORTHO05D005616 1.1e-33 146.7 97 77.3
THA.LOC104825981 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 1.1e-33 146.7 97 76.3
Haze_11759 Corylus avellana HOM05D000319 ORTHO05D005616 1.4e-33 146.4 97 78.4
arahy.Tifrunner.gnm1.ann1.69SMRU Arachis hypogaea HOM05D000319 ORTHO05D005616 1.8e-33 146.0 91 78.0
Gohir.D07G214600 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.4e-33 145.6 97 75.3
CiPaw.06G060900 Carya illinoinensis HOM05D000319 ORTHO05D005616 3.1e-33 145.2 97 78.4
Duzib138G1611 Durio zibethinus HOM05D000319 ORTHO05D005616 3.1e-33 145.2 97 75.3
Migut.D00371 Erythranthe guttata HOM05D000319 ORTHO05D005616 3.1e-33 145.2 96 75.0
Gorai.001G242600 Gossypium raimondii HOM05D000319 ORTHO05D005616 3.1e-33 145.2 91 76.9
SalBow4G3161 Salvia bowleyana HOM05D000319 ORTHO05D005616 3.1e-33 145.2 93 77.4
Thecc.01G267900 Theobroma cacao HOM05D000319 ORTHO05D005616 3.1e-33 145.2 97 75.3
Lj2A1160T39 Lonicera japonica HOM05D000319 ORTHO05D005616 4.0e-33 144.8 97 76.3
RcHm_v2.0_Chr2g0134501 Rosa chinensis HOM05D000319 ORTHO05D005616 4.0e-33 144.8 97 74.2
Sc17g0001020 Simmondsia chinensis HOM05D000319 ORTHO05D005616 4.0e-33 144.8 90 77.8
Actinidia19981 Actinidia chinensis HOM05D000319 ORTHO05D005616 5.3e-33 144.4 91 79.1
CANSAT56G1819 Cannabis sativa HOM05D000319 ORTHO05D005616 5.3e-33 144.4 97 74.2
Nn3g19503 Nelumbo nucifera HOM05D000319 ORTHO05D005616 5.3e-33 144.4 91 76.9
CAN.G1072.4 Capsicum annuum HOM05D000319 ORTHO05D005616 6.9e-33 144.1 91 79.1
CDE06G1797 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 6.9e-33 144.1 93 74.2
Eucgr.K03315 Eucalyptus grandis HOM05D000319 ORTHO05D005616 6.9e-33 144.1 97 77.3
Nitab4.5_0000187g0170 Nicotiana tabacum HOM05D000319 ORTHO05D005616 6.9e-33 144.1 97 77.3
TPR.G37240 Trifolium pratense HOM05D000319 ORTHO05D005616 6.9e-33 144.1 97 75.3
Manes.01G201800 Manihot esculenta HOM05D000319 ORTHO05D005616 9.0e-33 143.7 97 75.3
Actinidia09093 Actinidia chinensis HOM05D000319 ORTHO05D005616 1.2e-32 143.3 91 78.0
MBI11_g38515_MAGBIO Magnolia biondii HOM05D000319 ORTHO05D005616 1.2e-32 143.3 95 74.7
Manes.14G005900 Manihot esculenta HOM05D000319 ORTHO05D005616 1.2e-32 143.3 97 74.2
Potri.005G218000 Populus trichocarpa HOM05D000319 ORTHO05D005616 1.2e-32 143.3 97 75.3
Rhsim13G0030900 Rhododendron simsii HOM05D000319 ORTHO05D005616 1.2e-32 143.3 97 76.3
VMungo1080G0987 Vigna mungo HOM05D000319 ORTHO05D005616 1.2e-32 143.3 97 76.3
Nitab4.5_0003053g0020 Nicotiana tabacum HOM05D000319 ORTHO05D005616 2.0e-32 142.5 97 76.3
Phvul.005G179400 Phaseolus vulgaris HOM05D000319 ORTHO05D005616 2.0e-32 142.5 97 76.3
PGSC0003DMG400019303 Solanum tuberosum HOM05D000319 ORTHO05D005616 2.0e-32 142.5 97 75.3
Gohir.A07G208700 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.6e-32 142.1 91 74.7
Lalb_Chr24g0395411 Lupinus albus HOM05D000319 ORTHO05D005616 2.6e-32 142.1 72 91.7
Sopen09g027620 Solanum pennellii HOM05D000319 ORTHO05D005616 2.6e-32 142.1 97 75.3
CiPaw.05G169400 Carya illinoinensis HOM05D000319 ORTHO05D005616 3.4e-32 141.7 97 76.3
Glyma.13G367000 Glycine max HOM05D000319 ORTHO05D005616 3.4e-32 141.7 97 74.2
Glyma.15G006400 Glycine max HOM05D000319 ORTHO05D005616 3.4e-32 141.7 97 74.2
Medtr2g104110 Medicago truncatula HOM05D000319 ORTHO05D005616 3.4e-32 141.7 97 74.2
FvH4_6g29310 Fragaria vesca HOM05D000319 ORTHO05D005616 4.5e-32 141.4 97 74.2
FAN02G2104 Fragaria x ananassa HOM05D000319 ORTHO05D005616 4.5e-32 141.4 97 74.2
FAN05G4646 Fragaria x ananassa HOM05D000319 ORTHO05D005616 4.5e-32 141.4 111 67.6
HanXRQChr15g0467021 Helianthus annuus HOM05D000319 ORTHO05D005616 4.5e-32 141.4 97 73.2
FAN09G4049 Fragaria x ananassa HOM05D000319 ORTHO05D005616 5.8e-32 141.0 97 74.2
Lsat_1_v5_gn_9_8201 Lactuca sativa HOM05D000319 ORTHO05D005616 5.8e-32 141.0 97 72.2
vmacro02626 Vaccinium macrocarpon HOM05D000319 ORTHO05D005616 5.8e-32 141.0 70 94.3
PSO210G0711 Papaver somniferum HOM05D000319 ORTHO05D005616 7.6e-32 140.6 91 74.7
unitig_26.g10148 Utricularia gibba HOM05D000319 ORTHO05D005616 7.6e-32 140.6 93 76.3
Aa31LG5G2210 Aethionema arabicum HOM05D000319 ORTHO05D005616 1.0e-31 140.2 97 75.3
Cc01_g18870 Coffea canephora HOM05D000319 ORTHO05D005616 1.0e-31 140.2 96 76.0
SGA_v2.0_scaffold1G00552 Striga asiatica HOM05D000319 ORTHO05D005616 1.0e-31 140.2 96 74.0
PSO832G0193 Papaver somniferum HOM05D000319 ORTHO05D005616 1.7e-31 139.4 91 73.6
ClCG07G012250 Citrullus lanatus HOM05D000319 ORTHO05D005616 2.2e-31 139.0 97 75.3
MELO3C017843.2 Cucumis melo HOM05D000319 ORTHO05D005616 2.2e-31 139.0 97 75.3
TAR365G0186 Trochodendron aralioides HOM05D000319 ORTHO05D005616 2.2e-31 139.0 92 73.9
EL10Ac5g10471 Beta vulgaris HOM05D000319 ORTHO05D005616 3.8e-31 138.3 90 75.6
DCAR_018446 Daucus carota HOM05D000319 ORTHO05D005616 4.9e-31 137.9 94 72.3
Sed0023498 Sechium edule HOM05D000319 ORTHO05D005616 4.9e-31 137.9 91 76.9
ATR0665G648 Amborella trichopoda HOM05D000319 ORTHO05D005616 6.5e-31 137.5 99 68.7
ECA247G3951 Erigeron canadensis HOM05D000319 ORTHO05D005616 8.4e-31 137.1 97 71.1
Ah.11g049990 Amaranthus hybridus HOM05D000319 ORTHO05D005616 1.4e-30 136.3 90 73.3
Hund09567 Selenicereus undatus HOM05D000319 ORTHO05D005616 2.5e-30 135.6 96 69.8
CsaV3_4G001900 Cucumis sativus L. HOM05D000319 ORTHO05D005616 4.2e-30 134.8 97 73.2
Lj3g0018932 Lotus japonicus HOM05D000319 ORTHO05D005616 4.2e-30 134.8 96 72.9
FAN14G4091 Fragaria x ananassa HOM05D000319 ORTHO05D005616 5.5e-30 134.4 104 69.2
CDE07G0560 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 7.1e-30 134.0 93 71.0
HPP92_010249 Vanilla planifolia HOM05D000319 ORTHO05D005616 9.3e-30 133.7 95 69.5
HPP92_010274 Vanilla planifolia HOM05D000319 ORTHO05D005616 9.3e-30 133.7 95 69.5
AUR62011945 Chenopodium quinoa HOM05D000319 ORTHO05D005616 1.6e-29 132.9 90 72.2
AUR62032260 Chenopodium quinoa HOM05D000319 ORTHO05D005616 1.6e-29 132.9 90 72.2
Os05g0509200 Oryza sativa ssp. japonica HOM05D000319 ORTHO05D005616 6.0e-29 131.0 92 68.5
Sabra02G0036300 Salix brachista HOM05D000319 ORTHO05D005616 3.9e-28 128.3 148 52.7
Zm00001eb292370 Zea mays HOM05D000319 ORTHO05D005616 2.5e-27 125.6 77 74.0
AagrBONN_evm.TU.Sc2ySwM_368.222 Anthoceros agrestis HOM05D000319 ORTHO05D005616 1.6e-26 122.9 102 62.7
Sed0021269 Sechium edule HOM05D000319 ORTHO05D005616 1.6e-26 122.9 91 70.3
Pp3c2_9813 Physcomitrium patens HOM05D000319 ORTHO05D005616 3.1e-25 118.6 92 64.1
Psat5g303080 Pisum sativum HOM05D000319 ORTHO05D005616 6.9e-25 117.5 97 64.9
BolC2t09938H Brassica oleracea HOM05D000319 ORTHO05D005616 1.2e-24 116.7 89 69.7
Pp3c2_9810 Physcomitrium patens HOM05D000319 ORTHO05D005616 3.4e-24 115.2 93 62.4
SMO361G0598 Selaginella moellendorffii HOM05D000319 ORTHO05D005616 7.6e-24 114.0 69 76.8
BcaB05g23646 Brassica carinata HOM05D000319 ORTHO05D005616 1.0e-23 113.6 61 85.2
Mapoly0103s0061 Marchantia polymorpha HOM05D000319 ORTHO05D005616 2.2e-23 112.5 69 72.5
CBR_g10938 Chara braunii HOM05D000319 ORTHO05D005616 2.9e-23 112.1 69 73.9
Pp3c14_11220 Physcomitrium patens HOM05D000319 ORTHO05D005616 8.4e-23 110.5 91 60.4
SGA_v2.0_scaffold138G35283 Striga asiatica HOM05D000319 ORTHO05D005616 1.4e-22 109.8 110 58.2
CBR_g36360 Chara braunii HOM05D000319 ORTHO05D005616 4.2e-22 108.2 69 71.0
HPP92_010181 Vanilla planifolia HOM05D000319 ORTHO05D005616 3.2e-14 82.0 38 100.0
Peaxi162Scf00049g02221 Petunia axillaris HOM05D000319 ORTHO05D005616 4.2e-14 81.6 40 95.0
CAN.G2529.1 Capsicum annuum HOM05D000319 ORTHO05D005616 9.4e-14 80.5 40 95.0
Carub.0006s0058 Capsella rubella HOM05D000319 ORTHO05D005616 1.2e-13 80.1 41 90.2
PRCOL_00000415 Prasinoderma coloniale HOM05D000319 ORTHO05D005616 4.6e-13 78.2 69 55.1
Cfa025181 Carpinus fangiana HOM05D000319 ORTHO05D005616 7.9e-13 77.4 66 53.0
HanXRQChr01g0006871 Helianthus annuus HOM05D000319 ORTHO05D005616 7.9e-13 77.4 109 45.0
SEGI_22234 Sequoiadendron giganteum HOM05D000319 ORTHO05D005616 7.9e-13 77.4 38 92.1
Cre10.g450400 Chlamydomonas reinhardtii HOM05D000319 ORTHO05D005616 3.0e-12 75.5 62 51.6
Lj1A57T51 Lonicera japonica HOM05D000319 ORTHO05D005616 8.8e-12 73.9 42 83.3
Duzib133G0192 Durio zibethinus HOM05D000319 ORTHO05D005616 1.1e-11 73.6 61 59.0
BcaC03g16149 Brassica carinata HOM05D000319 ORTHO05D005616 1.5e-11 73.2 44 79.5
Haze_26296 Corylus avellana HOM05D000319 ORTHO05D005616 1.8e-09 66.2 83 43.4
Sabra05G0167100 Salix brachista HOM05D000319 ORTHO05D005616 1.8e-09 66.2 67 59.7
GSVIVG01013142001 Vitis vinifera HOM05D000319 ORTHO05D439463 3.8e-07 58.5 51 56.9
arahy.Tifrunner.gnm1.ann1.52VWXA Arachis hypogaea HOM05D000069 ORTHO05D086405 8.5e-07 57.4 29 93.1


User provided reference genes

Program Settings