Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p035908 Quercus lobata HOM05D006178 ORTHO05D007504 5.5e-203 710.7 342 100.0
CiPaw.05G188700 Carya illinoinensis HOM05D006178 ORTHO05D007504 1.1e-145 520.4 338 75.4
MD13G1020300 Malus domestica HOM05D006178 ORTHO05D007504 2.9e-135 485.7 339 71.4
FvH4_4g33550 Fragaria vesca HOM05D006178 ORTHO05D007504 1.4e-134 483.4 339 72.0
Prupe.1G333400 Prunus persica HOM05D006178 ORTHO05D007504 7.1e-134 481.1 338 70.1
FAN07G2930 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.3e-132 476.9 339 71.1
FAN12G1191 Fragaria x ananassa HOM05D006178 ORTHO05D007504 6.6e-132 474.6 351 69.5
FAN22G2090 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.5e-131 473.4 351 69.2
Lj2g0017740 Lotus japonicus HOM05D006178 ORTHO05D007504 1.9e-131 473.0 335 68.7
TWI74G1561 Tripterygium wilfordii HOM05D006178 ORTHO05D007504 3.3e-131 472.2 333 68.5
Atru.chr11.922 Acer truncatum HOM05D006178 ORTHO05D007504 5.6e-131 471.5 345 68.1
CsaV3_5G015780 Cucumis sativus L. HOM05D006178 ORTHO05D007504 1.2e-130 470.3 330 67.0
GSVIVG01011660001 Vitis vinifera HOM05D006178 ORTHO05D007504 2.8e-130 469.2 331 69.8
Psat6g046400 Pisum sativum HOM05D006178 ORTHO05D007504 8.1e-130 467.6 335 67.2
Glyma.02G085100 Glycine max HOM05D006178 ORTHO05D007504 1.1e-129 467.2 335 67.8
FAN17G1905 Fragaria x ananassa HOM05D006178 ORTHO05D007504 9.0e-129 464.2 350 68.3
Duzib251G0568 Durio zibethinus HOM05D006178 ORTHO05D007504 1.5e-128 463.4 339 68.1
Hma1.2p1_0277F.1_g111690 Hydrangea macrophylla HOM05D006178 ORTHO05D007504 1.5e-128 463.4 341 65.4
Medtr1g032430 Medicago truncatula HOM05D006178 ORTHO05D007504 4.4e-128 461.8 335 66.0
MELO3C016656.2 Cucumis melo HOM05D006178 ORTHO05D007504 9.9e-128 460.7 345 64.9
Actinidia38440 Actinidia chinensis HOM05D006178 ORTHO05D007504 2.2e-127 459.5 335 67.5
Thecc.02G292800 Theobroma cacao HOM05D006178 ORTHO05D007504 1.4e-126 456.8 338 67.2
Ciclev10015964m.g Citrus clementina HOM05D006178 ORTHO05D007504 9.3e-126 454.1 341 66.9
TPR.G36937 Trifolium pratense HOM05D006178 ORTHO05D007504 4.6e-125 451.8 336 66.1
Ca_12542_v3 Cicer arietinum L. HOM05D006178 ORTHO05D007504 1.7e-124 449.9 328 66.2
ClCG09G011820 Citrullus lanatus HOM05D006178 ORTHO05D007504 3.9e-124 448.7 325 66.8
Cpa.g.sc2.193 Carica papaya HOM05D006178 ORTHO05D007504 6.6e-124 448.0 334 66.2
Gohir.D01G139900 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.1e-121 440.7 339 64.0
Gorai.002G172000 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.1e-121 440.7 339 64.0
Lalb_Chr17g0338441 Lupinus albus HOM05D006178 ORTHO05D007504 1.8e-121 439.9 315 68.3
Gohir.A01G146700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.4e-121 439.5 339 63.7
Manes.15G134200 Manihot esculenta HOM05D006178 ORTHO05D007504 2.4e-121 439.5 344 62.5
COL.COLO4_16591 Corchorus olitorius HOM05D006178 ORTHO05D007504 5.3e-121 438.3 331 66.5
Potri.010G106400 Populus trichocarpa HOM05D006178 ORTHO05D007504 1.3e-119 433.7 335 63.3
Sc04g0008610 Simmondsia chinensis HOM05D006178 ORTHO05D007504 8.4e-119 431.0 342 62.6
arahy.Tifrunner.gnm1.ann1.56CUD8 Arachis hypogaea HOM05D006178 ORTHO05D007504 1.1e-118 430.6 335 63.6
Eucgr.B02675 Eucalyptus grandis HOM05D006178 ORTHO05D007504 2.1e-117 426.4 331 63.7
Cc11_g07280 Coffea canephora HOM05D006178 ORTHO05D007504 3.5e-117 425.6 344 61.6
arahy.Tifrunner.gnm1.ann1.M99K8C Arachis hypogaea HOM05D006178 ORTHO05D007504 6.0e-117 424.9 335 62.7
Hund24927 Selenicereus undatus HOM05D006178 ORTHO05D007504 2.5e-115 419.5 390 56.4
Ah.02g128010 Amaranthus hybridus HOM05D006178 ORTHO05D007504 1.6e-114 416.8 340 61.8
THA.LOC104821906 Tarenaya hassleriana HOM05D006178 ORTHO05D007504 2.8e-114 416.0 336 61.3
EL10Ac2g02672 Beta vulgaris HOM05D006178 ORTHO05D007504 3.7e-114 415.6 331 62.2
Phvul.003G019200 Phaseolus vulgaris HOM05D006178 ORTHO05D007504 3.1e-113 412.5 335 60.6
PGSC0003DMG400028747 Solanum tuberosum HOM05D006178 ORTHO05D007504 3.1e-113 412.5 327 61.2
Oeu044010.1 Olea europaea HOM05D006178 ORTHO05D007504 4.0e-113 412.1 323 63.8
CAN.G511.14 Capsicum annuum HOM05D006178 ORTHO05D007504 6.9e-113 411.4 340 60.0
Migut.E00482 Erythranthe guttata HOM05D006178 ORTHO05D007504 6.9e-113 411.4 348 61.5
HanXRQChr15g0476731 Helianthus annuus HOM05D006178 ORTHO05D007504 1.5e-112 410.2 332 60.2
Haze_10879 Corylus avellana HOM05D006178 ORTHO05D007504 2.6e-112 409.5 274 74.5
Solyc07g008850.3 Solanum lycopersicum HOM05D006178 ORTHO05D007504 3.4e-112 409.1 331 60.4
ECA246G2474 Erigeron canadensis HOM05D006178 ORTHO05D007504 2.9e-111 406.0 338 59.5
SalBow2G2905 Salvia bowleyana HOM05D006178 ORTHO05D007504 2.9e-111 406.0 342 59.6
Sopen07g004780 Solanum pennellii HOM05D006178 ORTHO05D007504 4.9e-111 405.2 335 60.3
Lsat_1_v5_gn_3_53481 Lactuca sativa HOM05D006178 ORTHO05D007504 8.4e-111 404.4 330 60.9
Lj6C738G3 Lonicera japonica HOM05D001486 ORTHO05D007504 8.4e-111 404.4 326 60.1
Thhalv10007963m.g Eutrema salsugineum HOM05D006178 ORTHO05D007504 1.1e-110 404.1 328 60.7
AUR62014248 Chenopodium quinoa HOM05D006178 ORTHO05D007504 1.4e-110 403.7 314 63.1
AUR62038473 Chenopodium quinoa HOM05D006178 ORTHO05D007504 2.1e-109 399.8 333 59.8
PSO478G4000 Papaver somniferum HOM05D006178 ORTHO05D007504 4.6e-109 398.7 328 59.1
DCAR_007330 Daucus carota HOM05D006178 ORTHO05D007504 7.9e-109 397.9 316 62.0
PSO017G4246 Papaver somniferum HOM05D006178 ORTHO05D007504 7.9e-109 397.9 328 59.1
Sp1g23080 Schrenkiella parvula HOM05D006178 ORTHO05D007504 3.3e-107 392.5 335 58.5
Carub.0001s2539 Capsella rubella HOM05D006178 ORTHO05D007504 9.6e-107 391.0 332 59.0
AT1G24793 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 4.8e-106 388.7 328 59.1
AT1G25054 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 4.8e-106 388.7 328 59.1
AT1G25145 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 4.8e-106 388.7 328 59.1
AT1G25210 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 4.8e-106 388.7 328 59.1
AL1G40190 Arabidopsis lyrata HOM05D006178 ORTHO05D007504 1.8e-105 386.7 328 59.5
A08p26780 Brassica napus HOM05D006178 ORTHO05D007504 6.9e-105 384.8 328 58.5
Peaxi162Scf00937g00336 Petunia axillaris HOM05D006178 ORTHO05D007504 1.3e-103 380.6 315 59.4
BraA08t34624Z Brassica rapa HOM05D006178 ORTHO05D007504 4.9e-103 378.6 328 58.2
BcaC01g01670 Brassica carinata HOM05D006178 ORTHO05D007504 1.9e-102 376.7 364 53.6
BcaB03g12042 Brassica carinata HOM05D006178 ORTHO05D007504 1.2e-101 374.0 324 57.4
C03p73180 Brassica napus HOM05D006178 ORTHO05D007504 4.6e-101 372.1 366 53.6
BolC3t19616H Brassica oleracea HOM05D006178 ORTHO05D007504 4.6e-101 372.1 366 53.6
Dinv07729 Davidia involucrata HOM05D006178 ORTHO05D007504 7.9e-101 371.3 274 65.7
MBI13_g29562_MAGBIO Magnolia biondii HOM05D006178 ORTHO05D007504 1.3e-100 370.5 331 57.4
Aa31LG7G9330 Aethionema arabicum HOM05D006178 ORTHO05D007504 3.0e-100 369.4 327 57.5
vmacro00552 Vaccinium macrocarpon HOM05D006178 ORTHO05D007504 2.0e-96 356.7 348 56.0
Aqoxy3G00007 Aquilegia oxysepala HOM05D006178 ORTHO05D007504 1.1e-94 350.9 342 54.1
CANSAT01G0234 Cannabis sativa HOM05D006178 ORTHO05D007504 2.3e-92 343.2 276 64.1
Sabra10G0077800 Salix brachista HOM05D006178 ORTHO05D007504 4.1e-89 332.4 290 58.3
Os03g0223900 Oryza sativa ssp. japonica HOM05D006178 ORTHO05D007504 2.9e-87 326.2 330 51.2
Sed0021590 Sechium edule HOM05D006178 ORTHO05D007504 7.2e-86 321.6 246 61.4
ATR0753G153 Amborella trichopoda HOM05D006178 ORTHO05D007504 4.7e-85 318.9 311 51.8
RcHm_v2.0_Chr7g0235121 Rosa chinensis HOM05D006178 ORTHO05D007504 1.4e-84 317.4 236 66.9
Zm00001eb009130 Zea mays HOM05D006178 ORTHO05D007504 2.3e-84 316.6 335 51.0
SGA_v2.0_scaffold23G10206 Striga asiatica HOM05D006178 ORTHO05D007504 1.2e-80 304.3 309 53.1
CSS0005024 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.1e-75 287.7 189 73.0
CSS0001732 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 2.0e-75 287.0 194 70.6
unitig_22.g5599 Utricularia gibba HOM05D000369 ORTHO05D000253 2.0e-75 287.0 336 50.3
Nitab4.5_0000018g0160 Nicotiana tabacum HOM05D006178 ORTHO05D007504 9.7e-75 284.6 243 58.8
Pp3c3_1850 Physcomitrium patens HOM05D006178 ORTHO05D007504 1.3e-74 284.3 339 46.0
HPP92_013128 Vanilla planifolia HOM05D006178 ORTHO05D007504 3.7e-74 282.7 293 49.1
Nitab4.5_0009975g0010 Nicotiana tabacum HOM05D006178 ORTHO05D007504 1.2e-72 277.7 248 57.3
Mapoly0012s0127 Marchantia polymorpha HOM05D006178 ORTHO05D007504 2.9e-71 273.1 321 47.0
Gorai.001G151600 Gossypium raimondii HOM05D006178 ORTHO05D007504 4.7e-69 265.8 194 63.9
Gohir.D08G117400 Gossypium hirsutum HOM05D006178 ORTHO05D007504 6.1e-69 265.4 192 65.1
Gohir.D10G193800 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.0e-68 264.6 186 65.1
Gohir.D07G139600 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.8e-68 263.8 194 63.9
Gorai.010G050600 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.8e-68 263.8 186 64.5
Gohir.D13G135551 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.3e-68 263.5 184 65.2
HPP92_013158 Vanilla planifolia HOM05D006178 ORTHO05D007504 5.5e-62 242.3 238 50.4
SMO232G0119 Selaginella moellendorffii HOM05D006178 ORTHO05D007504 4.0e-60 236.1 327 41.0
Gohir.D11G251901 Gossypium hirsutum HOM05D006178 ORTHO05D007504 8.8e-60 235.0 194 59.8
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 5.7e-59 232.3 256 47.7
TAR629G3300 Trochodendron aralioides HOM05D006178 ORTHO05D007504 9.8e-59 231.5 186 60.8
Gorai.005G149500 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.3e-55 221.1 192 57.8
CBR_g12524 Chara braunii HOM05D006178 ORTHO05D007504 6.6e-55 218.8 411 36.5
Gorai.005G145500 Gossypium raimondii HOM05D006178 ORTHO05D007504 7.5e-51 205.3 203 52.2
QL03p035827 Quercus lobata HOM05D006178 ORTHO05D007504 1.8e-49 200.7 108 88.9
CSS0007559 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 6.1e-45 185.7 106 79.2
CSS0004101 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.4e-44 184.5 106 78.3
TAR629G1361 Trochodendron aralioides HOM05D006178 ORTHO05D007504 1.3e-42 177.9 107 75.7
MCO09G291 Micromonas commoda HOM05D006178 ORTHO05D007504 1.1e-41 174.9 319 37.3
Gorai.007G245600 Gossypium raimondii HOM05D006178 ORTHO05D007504 8.6e-39 165.2 115 66.1
SEGI_10880 Sequoiadendron giganteum HOM05D006178 ORTHO05D007504 1.5e-38 164.5 188 44.1
PRCOL_00001866 Prasinoderma coloniale HOM05D006178 ORTHO05D007504 1.6e-37 161.0 347 32.9
Gohir.D11G228700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.1e-37 160.6 115 64.3
Gorai.009G391300 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.0e-35 154.1 108 66.7
AagrBONN_evm.TU.Sc2ySwM_340.423 Anthoceros agrestis HOM05D006178 ORTHO05D007504 1.1e-33 148.3 184 44.0
CARHR026360 Cardamine hirsuta HOM05D006178 ORTHO05D007504 6.6e-31 139.0 120 56.7
Nn3g18364 Nelumbo nucifera HOM05D006178 ORTHO05D007504 1.4e-28 131.3 111 56.8
Cre16.g653350 Chlamydomonas reinhardtii HOM05D006178 ORTHO05D007504 2.2e-26 124.0 295 31.2
Glyma.13G368200 Glycine max HOM05D006178 ORTHO05D007504 3.0e-23 113.6 91 60.4
Glyma.13G258800 Glycine max HOM05D006178 ORTHO05D007504 3.9e-23 113.2 85 61.2
Nn3g18365 Nelumbo nucifera HOM05D006178 ORTHO05D007504 5.1e-23 112.8 70 78.6
Ca_29306_v3 Cicer arietinum L. HOM05D001616 ORTHO05D007504 6.8e-20 102.4 325 28.9
Sed0025662 Sechium edule HOM05D006178 ORTHO05D007504 1.3e-15 88.2 45 84.4
QL02p029395 Quercus lobata HOM05D002431 ORTHO05D002543 3.4e-11 73.6 39 84.6
MCO05G527 Micromonas commoda HOM05D014289 ORTHO05D018957 3.5e-08 63.5 170 34.1
Gohir.D08G060150 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.5e-06 57.4 39 64.1


User provided reference genes

Program Settings