Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p031232 Quercus lobata HOM05D001630 ORTHO05D043353 1.9e-69 265.8 140 100.0
QL03p033886 Quercus lobata HOM05D001630 ORTHO05D002505 3.5e-23 112.1 87 75.9
Haze_10944 Corylus avellana HOM05D001630 ORTHO05D002505 7.4e-13 77.8 93 57.0
CiPaw.07G199000 Carya illinoinensis HOM05D000129 ORTHO05D000144 8.2e-12 74.3 46 80.4
CiPaw.08G031500 Carya illinoinensis HOM05D000129 ORTHO05D000144 1.8e-11 73.2 46 76.1
Atru.chr2.87 Acer truncatum HOM05D000129 ORTHO05D000144 4.5e-10 68.6 45 75.6
arahy.Tifrunner.gnm1.ann1.GJ0FTP Arachis hypogaea HOM05D000129 ORTHO05D000144 4.5e-10 68.6 46 76.1
arahy.Tifrunner.gnm1.ann1.Z0JMUR Arachis hypogaea HOM05D000129 ORTHO05D000144 4.5e-10 68.6 46 76.1
Lalb_Chr08g0231991 Lupinus albus HOM05D000129 ORTHO05D000144 4.5e-10 68.6 46 76.1
Lalb_Chr23g0276721 Lupinus albus HOM05D000129 ORTHO05D000144 5.9e-10 68.2 46 76.1
CiPaw.05G193800 Carya illinoinensis HOM05D001630 ORTHO05D002505 7.6e-10 67.8 93 51.6
arahy.Tifrunner.gnm1.ann1.HD6RLF Arachis hypogaea HOM05D000129 ORTHO05D011927 1.3e-09 67.0 46 73.9
Cfa013468 Carpinus fangiana HOM05D000129 ORTHO05D000144 2.2e-09 66.2 46 73.9
Atru.chr7.923 Acer truncatum HOM05D000129 ORTHO05D000144 3.8e-09 65.5 45 73.3
Cfa014978 Carpinus fangiana HOM05D001630 ORTHO05D002505 5.0e-09 65.1 95 54.7
Manes.06G017700 Manihot esculenta HOM05D000129 ORTHO05D000144 5.0e-09 65.1 46 67.4
Prupe.1G072600 Prunus persica HOM05D000129 ORTHO05D000144 5.0e-09 65.1 46 71.7
Cpa.g.sc115.64 Carica papaya HOM05D000129 ORTHO05D000144 1.1e-08 63.9 46 67.4
MD16G1246100 Malus domestica HOM05D000129 ORTHO05D000144 1.4e-08 63.5 46 67.4
arahy.Tifrunner.gnm1.ann1.FA138U Arachis hypogaea HOM05D000129 ORTHO05D000144 1.9e-08 63.2 46 71.7
Ciclev10007305m.g Citrus clementina HOM05D000129 ORTHO05D000144 1.9e-08 63.2 45 64.4
arahy.Tifrunner.gnm1.ann1.A74HRV Arachis hypogaea HOM05D000129 ORTHO05D000144 2.5e-08 62.8 45 71.1
Haze_22045 Corylus avellana HOM05D000129 ORTHO05D000144 2.5e-08 62.8 46 69.6
MELO3C003950.2 Cucumis melo HOM05D000129 ORTHO05D000144 2.5e-08 62.8 46 67.4
Lalb_Chr12g0199671 Lupinus albus HOM05D000129 ORTHO05D000144 2.5e-08 62.8 46 69.6
Manes.14G162600 Manihot esculenta HOM05D000129 ORTHO05D000144 2.5e-08 62.8 46 65.2
Cfa002134 Carpinus fangiana HOM05D000129 ORTHO05D000144 3.2e-08 62.4 46 60.9
Hma1.2p1_0524F.1_g172390 Hydrangea macrophylla HOM05D001630 ORTHO05D002505 3.2e-08 62.4 92 53.3
QL02p064569 Quercus lobata HOM05D000129 ORTHO05D000144 3.2e-08 62.4 46 71.7
CANSAT01G0630 Cannabis sativa HOM05D000129 ORTHO05D000144 4.2e-08 62.0 46 65.2
TWI34G1012 Tripterygium wilfordii HOM05D000129 ORTHO05D000144 4.2e-08 62.0 46 65.2
Nn8g40669 Nelumbo nucifera HOM05D000129 ORTHO05D000144 5.5e-08 61.6 46 67.4
Dinv25468 Davidia involucrata HOM05D000129 ORTHO05D000144 7.2e-08 61.2 46 65.2
Migut.L00397 Erythranthe guttata HOM05D001630 ORTHO05D002505 7.2e-08 61.2 129 39.5
CSS0039751 Camellia sinensis var. sinensis HOM05D000129 ORTHO05D043353 9.3e-08 60.8 46 65.2
ClCG11G011560 Citrullus lanatus HOM05D000129 ORTHO05D000144 9.3e-08 60.8 46 67.4
Hma1.2p1_1541F.1_g289690 Hydrangea macrophylla HOM05D001630 ORTHO05D002505 9.3e-08 60.8 92 52.2
MD13G1241000 Malus domestica HOM05D000129 ORTHO05D000144 9.3e-08 60.8 46 67.4
arahy.Tifrunner.gnm1.ann1.KE4T51 Arachis hypogaea HOM05D000129 ORTHO05D000144 1.2e-07 60.5 48 64.6
arahy.Tifrunner.gnm1.ann1.WPXT30 Arachis hypogaea HOM05D000129 ORTHO05D000144 1.2e-07 60.5 48 64.6
Lj4g0004959 Lotus japonicus HOM05D000129 ORTHO05D000144 1.2e-07 60.5 46 69.6
RcHm_v2.0_Chr4g0398821 Rosa chinensis HOM05D000129 ORTHO05D000144 1.6e-07 60.1 44 68.2
Ciclev10014686m.g Citrus clementina HOM05D001630 ORTHO05D002505 2.1e-07 59.7 91 44.0
CsaV3_2G008960 Cucumis sativus L. HOM05D000129 ORTHO05D000144 2.1e-07 59.7 46 65.2
Glyma.08G095200 Glycine max HOM05D001630 ORTHO05D002505 2.7e-07 59.3 131 39.7
MD16G1245600 Malus domestica HOM05D000129 ORTHO05D000144 2.7e-07 59.3 46 63.0
Potri.006G072900 Populus trichocarpa HOM05D000129 ORTHO05D000144 2.7e-07 59.3 46 63.0
Potri.018G139800 Populus trichocarpa HOM05D000129 ORTHO05D000144 2.7e-07 59.3 81 43.2
TWI63G0331 Tripterygium wilfordii HOM05D000129 ORTHO05D000144 2.7e-07 59.3 75 45.3
TWI63G1554 Tripterygium wilfordii HOM05D000129 ORTHO05D000144 3.6e-07 58.9 75 44.0
TAR369G0135 Trochodendron aralioides HOM05D000129 ORTHO05D000144 3.6e-07 58.9 46 63.0
CiPaw.07G198800 Carya illinoinensis HOM05D000129 ORTHO05D000144 4.6e-07 58.5 46 69.6
Manes.09G126500 Manihot esculenta HOM05D000129 ORTHO05D000144 4.6e-07 58.5 46 63.0
QL05p082573 Quercus lobata HOM05D000129 ORTHO05D000144 4.6e-07 58.5 44 63.6
Rhsim03G0267700 Rhododendron simsii HOM05D000129 ORTHO05D000144 4.6e-07 58.5 46 63.0
THA.LOC104811763 Tarenaya hassleriana HOM05D000129 ORTHO05D000144 4.6e-07 58.5 75 42.7
arahy.Tifrunner.gnm1.ann1.12V30E Arachis hypogaea HOM05D000129 ORTHO05D000144 6.1e-07 58.2 46 60.9
arahy.Tifrunner.gnm1.ann1.ZW9JKZ Arachis hypogaea HOM05D000129 ORTHO05D000144 6.1e-07 58.2 46 60.9
HanXRQChr10g0309001 Helianthus annuus HOM05D000129 ORTHO05D000144 6.1e-07 58.2 46 67.4
Sabra06G0054300 Salix brachista HOM05D000129 ORTHO05D000144 6.1e-07 58.2 46 63.0
Hund06697 Selenicereus undatus HOM05D000129 ORTHO05D000144 6.1e-07 58.2 46 65.2
vmacro05989 Vaccinium macrocarpon HOM05D000129 ORTHO05D000144 6.1e-07 58.2 46 63.0
Actinidia29961 Actinidia chinensis HOM05D000129 ORTHO05D000144 7.9e-07 57.8 46 58.7
AUR62027427 Chenopodium quinoa HOM05D000129 ORTHO05D000144 7.9e-07 57.8 46 65.2
Dinv28043 Davidia involucrata HOM05D001630 ORTHO05D002505 7.9e-07 57.8 92 50.0
Dinv41196 Davidia involucrata HOM05D000129 ORTHO05D000144 7.9e-07 57.8 46 60.9
Glyma.05G139900 Glycine max HOM05D001630 ORTHO05D002505 7.9e-07 57.8 130 39.2
Sc18g0003810 Simmondsia chinensis HOM05D000129 ORTHO05D000144 7.9e-07 57.8 82 47.6
CiPaw.02G048500 Carya illinoinensis HOM05D000129 ORTHO05D000144 1.0e-06 57.4 44 61.4
Eucgr.F04017 Eucalyptus grandis HOM05D000129 ORTHO05D000144 1.0e-06 57.4 46 58.7
Glyma.09G061200 Glycine max HOM05D000129 ORTHO05D000144 1.0e-06 57.4 49 65.3
HanXRQChr05g0142111 Helianthus annuus HOM05D000129 ORTHO05D000144 1.0e-06 57.4 46 63.0
MBI14_g10726_MAGBIO Magnolia biondii HOM05D000129 ORTHO05D000144 1.0e-06 57.4 46 67.4
Phvul.003G140200 Phaseolus vulgaris HOM05D000129 ORTHO05D000144 1.0e-06 57.4 46 65.2
Gorai.002G176900 Gossypium raimondii HOM05D001630 ORTHO05D002505 1.3e-06 57.0 98 45.9
MSTRG.2151 Avicennia marina HOM05D001630 ORTHO05D002505 1.8e-06 56.6 110 40.0
GSVIVG01016158001 Vitis vinifera HOM05D000129 ORTHO05D000144 1.8e-06 56.6 55 50.9
GSVIVG01029283001 Vitis vinifera HOM05D000129 ORTHO05D000144 1.8e-06 56.6 46 65.2
CSS0014868 Camellia sinensis var. sinensis HOM05D001630 ORTHO05D002505 2.3e-06 56.2 91 48.4
AUR62031270 Chenopodium quinoa HOM05D000129 ORTHO05D000144 2.3e-06 56.2 46 65.2
Eucgr.C00095 Eucalyptus grandis HOM05D000129 ORTHO05D000144 2.3e-06 56.2 46 63.0
Glyma.15G167500 Glycine max HOM05D000129 ORTHO05D000144 2.3e-06 56.2 46 67.4
Lsat_1_v5_gn_5_84040 Lactuca sativa HOM05D000129 ORTHO05D000144 2.3e-06 56.2 46 63.0
Sabra18G0114300 Salix brachista HOM05D000129 ORTHO05D000144 2.3e-06 56.2 46 63.0
TAR625G0849 Trochodendron aralioides HOM05D000129 ORTHO05D000144 3.0e-06 55.8 46 58.7
Ah.09g228550 Amaranthus hybridus HOM05D000129 ORTHO05D000144 3.9e-06 55.5 46 60.9
Cc06_g17400 Coffea canephora HOM05D000129 ORTHO05D000144 3.9e-06 55.5 46 58.7
Eucgr.C02215 Eucalyptus grandis HOM05D000129 ORTHO05D000144 3.9e-06 55.5 46 58.7
Sed0010376 Sechium edule HOM05D000129 ORTHO05D000144 3.9e-06 55.5 46 58.7
Lalb_Chr13g0293721 Lupinus albus HOM05D001630 ORTHO05D002505 5.1e-06 55.1 135 39.3
Os04g0605500 Oryza sativa ssp. japonica HOM05D000129 ORTHO05D000144 5.1e-06 55.1 46 56.5
Potri.018G139900 Populus trichocarpa HOM05D000129 ORTHO05D000144 5.1e-06 55.1 46 58.7
SalBow6G7025 Salvia bowleyana HOM05D000129 ORTHO05D000144 5.1e-06 55.1 50 54.0
CSS0010408 Camellia sinensis var. sinensis HOM05D000129 ORTHO05D000144 6.7e-06 54.7 46 63.0
Hma1.2p1_0235F.1_g098780 Hydrangea macrophylla HOM05D000129 ORTHO05D000144 6.7e-06 54.7 46 60.9
Lj5C611G7 Lonicera japonica HOM05D000129 ORTHO05D000144 6.7e-06 54.7 46 58.7
PGR142G2354 Punica granatum HOM05D000129 ORTHO05D000144 6.7e-06 54.7 46 63.0
ATR0580G425 Amborella trichopoda HOM05D000129 ORTHO05D000144 8.7e-06 54.3 46 52.2
Glyma.17G057800 Glycine max HOM05D000129 ORTHO05D000144 8.7e-06 54.3 47 63.8
Prupe.3G018900 Prunus persica HOM05D000129 ORTHO05D000144 8.7e-06 54.3 46 54.3
TAR626G1733 Trochodendron aralioides HOM05D000129 ORTHO05D000144 8.7e-06 54.3 46 56.5


User provided reference genes

Program Settings