Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p026982 Quercus lobata HOM05D004252 ORTHO05D005101 0.0e+00 3535.7 1847 100.0
Haze_04358 Corylus avellana HOM05D004252 ORTHO05D005101 0.0e+00 3092.4 1893 86.3
Cfa006427 Carpinus fangiana HOM05D004252 ORTHO05D005101 0.0e+00 3085.4 1857 87.1
CiPaw.08G123300 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 3016.9 1861 84.8
Prupe.6G343600 Prunus persica HOM05D004252 ORTHO05D005101 0.0e+00 2833.5 1858 79.9
Manes.09G152800 Manihot esculenta HOM05D004252 ORTHO05D005101 0.0e+00 2823.9 1854 79.0
Dinv20302 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 2806.9 1855 79.0
Thecc.05G283200 Theobroma cacao HOM05D004252 ORTHO05D005101 0.0e+00 2774.2 1836 79.2
Potri.005G053700 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2753.0 1855 78.2
Ciclev10000014m.g Citrus clementina HOM05D004252 ORTHO05D005101 0.0e+00 2748.8 1860 78.2
MD04G1224900 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2748.8 1859 77.1
Potri.013G041201 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2744.1 1855 78.3
CANSAT54G1217 Cannabis sativa HOM05D004252 ORTHO05D005101 0.0e+00 2741.8 1857 78.0
MD12G1241600 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2741.5 1845 77.6
Duzib128G1785 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2739.5 1841 78.3
RcHm_v2.0_Chr3g0451091 Rosa chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2737.2 1859 77.5
COL.COLO4_15351 Corchorus olitorius HOM05D004252 ORTHO05D005101 0.0e+00 2734.5 1835 78.4
TAR362G1238 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2733.7 1861 77.3
CSS0026350 Camellia sinensis var. sinensis HOM05D004252 ORTHO05D005101 0.0e+00 2729.9 1852 77.2
Sabra05G0047100 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2728.4 1858 77.2
Sabra13G0038000 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2715.6 1891 76.4
TWI12G0933 Tripterygium wilfordii HOM05D004252 ORTHO05D005101 0.0e+00 2714.5 1854 76.7
Gorai.004G246800 Gossypium raimondii HOM05D004252 ORTHO05D005101 0.0e+00 2700.6 1835 77.7
Gohir.D08G232300 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 2691.8 1835 77.5
GSVIVG01021781001 Vitis vinifera HOM05D004252 ORTHO05D005101 0.0e+00 2690.2 1851 76.3
FvH4_6g02880 Fragaria vesca HOM05D004252 ORTHO05D005101 0.0e+00 2675.2 1864 75.9
Duzib177G1152 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2666.7 1830 77.2
Nn3g19509 Nelumbo nucifera HOM05D004252 ORTHO05D005101 0.0e+00 2663.3 1858 74.2
FAN09G2874 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2659.4 1868 75.6
TAR633G0655 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2654.0 1863 75.8
FAN02G2888 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2652.9 1868 75.3
Glyma.19G245100 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2646.7 1857 74.5
Phvul.006G101900 Phaseolus vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2644.8 1858 74.7
FAN05G2119 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2634.4 1868 75.4
VMungo0540G0159 Vigna mungo HOM05D004252 ORTHO05D005101 0.0e+00 2632.1 1858 74.6
arahy.Tifrunner.gnm1.ann1.9CBY7M Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2630.9 1855 74.4
Glyma.03G247300 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2621.7 1856 74.0
CsaV3_2G004140 Cucumis sativus L. HOM05D004252 ORTHO05D005101 0.0e+00 2620.9 1859 74.3
arahy.Tifrunner.gnm1.ann1.39XKQR Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2603.9 1855 74.2
MELO3C004380.2 Cucumis melo HOM05D004252 ORTHO05D005101 0.0e+00 2571.6 1925 71.4
Lalb_Chr04g0262241 Lupinus albus HOM05D004252 ORTHO05D005101 0.0e+00 2566.2 1858 72.3
Sed0025221 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2561.2 1858 71.9
Sed0020402 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2560.8 1859 72.2
Lj1g0020341 Lotus japonicus HOM05D004252 ORTHO05D005101 0.0e+00 2552.3 1859 73.1
Psat3g007080 Pisum sativum HOM05D004252 ORTHO05D005101 0.0e+00 2538.8 1851 73.4
Rhsim04G0066800 Rhododendron simsii HOM05D004252 ORTHO05D005101 0.0e+00 2538.5 1870 72.7
PGR142G2894 Punica granatum HOM05D004252 ORTHO05D005101 0.0e+00 2535.4 1860 73.0
Lj1A1079G39 Lonicera japonica HOM05D004252 ORTHO05D005101 0.0e+00 2522.7 1874 73.2
Ca_09423_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2518.0 1860 72.2
Ca_29790_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2518.0 1860 72.2
vmacro20358 Vaccinium macrocarpon HOM05D004252 ORTHO05D005101 0.0e+00 2516.9 1928 70.3
Medtr7g115190 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2508.4 1850 72.5
ClCG02G016630 Citrullus lanatus HOM05D004252 ORTHO05D005101 0.0e+00 2504.9 1858 71.8
Peaxi162Scf00282g00418 Petunia axillaris HOM05D004252 ORTHO05D005101 0.0e+00 2494.5 1854 71.4
Actinidia32806 Actinidia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2493.4 1814 73.3
Cc02_g30700 Coffea canephora HOM05D004252 ORTHO05D005101 0.0e+00 2487.2 1825 71.7
Solyc01g097320.3 Solanum lycopersicum HOM05D004252 ORTHO05D005101 0.0e+00 2482.2 1858 70.9
PSO832G2970 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2470.7 1856 69.9
PSO210G6431 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2464.5 1856 69.6
Eucgr.B02119 Eucalyptus grandis HOM05D004252 ORTHO05D005101 0.0e+00 2424.4 1853 70.2
TPR.G6924 Trifolium pratense HOM05D004252 ORTHO05D005101 0.0e+00 2418.3 1855 70.2
Hund06974 Selenicereus undatus HOM05D004252 ORTHO05D005101 0.0e+00 2380.5 1860 69.4
Aqoxy5G01125 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2379.4 1854 68.9
Sc20g0000330 Simmondsia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2368.2 1859 68.8
AUR62004951 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 2361.3 1856 69.0
EL10Ac4g09148 Beta vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2357.8 1857 69.0
DCAR_023243 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2355.5 1860 67.8
Sopen01g040990 Solanum pennellii HOM05D004252 ORTHO05D005101 0.0e+00 2342.8 1738 71.2
Medtr1g087060 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2340.1 1850 68.8
SalBow3G2512 Salvia bowleyana HOM05D004252 ORTHO05D005101 0.0e+00 2323.9 1851 67.6
Aqoxy6G01279 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2321.2 1855 67.5
Migut.B01091 Erythranthe guttata HOM05D004252 ORTHO05D005101 0.0e+00 2292.7 1877 65.8
DCAR_014751 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2270.4 1846 67.0
ECA240G2739 Erigeron canadensis HOM05D004252 ORTHO05D005101 0.0e+00 2270.4 1853 66.9
THA.LOC104818630 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2216.8 1839 66.4
THA.LOC104821672 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2213.3 1848 65.9
HanXRQChr13g0411361 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2170.6 1855 64.6
Thhalv10019885m.g Eutrema salsugineum HOM05D004252 ORTHO05D005101 0.0e+00 2157.1 1858 64.4
HanXRQChr03g0080781 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2157.1 1847 64.5
AL3G14870 Arabidopsis lyrata HOM05D004252 ORTHO05D005101 0.0e+00 2151.3 1854 64.5
Nitab4.5_0001592g0060 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 2145.2 1769 65.9
AT3G04740 Arabidopsis thaliana HOM05D004252 ORTHO05D005101 0.0e+00 2144.4 1857 63.9
Sp3g03590 Schrenkiella parvula HOM05D004252 ORTHO05D005101 0.0e+00 2137.1 1854 64.0
Aa31LG5G15140 Aethionema arabicum HOM05D004252 ORTHO05D005101 0.0e+00 2104.3 1851 63.0
Carub.0003s0391 Capsella rubella HOM05D004252 ORTHO05D005101 0.0e+00 2098.2 1854 63.4
AUR62001006 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 2097.4 1860 63.2
ATR0665G632 Amborella trichopoda HOM05D004252 ORTHO05D005101 0.0e+00 2077.0 1884 60.6
CDE06G0814 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 2073.5 1845 61.9
Lsat_1_v5_gn_5_53600 Lactuca sativa HOM05D004252 ORTHO05D005101 0.0e+00 2056.6 1849 63.1
A05p42820 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1995.7 1842 61.3
C05p62540 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1989.9 1845 60.9
BolC5t34909H Brassica oleracea HOM05D004252 ORTHO05D005101 0.0e+00 1989.2 1845 60.9
BraA05t22970Z Brassica rapa HOM05D004252 ORTHO05D005101 0.0e+00 1981.8 1863 60.5
Gohir.A08G215700 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 1963.0 1384 74.6
unitig_699.g19676 Utricularia gibba HOM05D004252 ORTHO05D005101 0.0e+00 1961.0 1848 59.7
CiPaw.07G067400 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 1931.8 1583 69.0
Os09g0281900 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 0.0e+00 1857.4 1865 56.5
Zm00001eb097360 Zea mays HOM05D004252 ORTHO05D005101 0.0e+00 1836.2 1859 55.9
Dinv08153 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 1818.1 1238 77.1
arahy.Tifrunner.gnm1.ann1.YD0KDM Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1796.2 1362 70.1
arahy.Tifrunner.gnm1.ann1.QZ0BKE Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1791.5 1355 70.3
Oeu002657.3 Olea europaea HOM05D004252 ORTHO05D005101 0.0e+00 1781.1 1492 65.7
Nitab4.5_0008996g0010 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1742.2 1818 55.7
HPP92_026425 Vanilla planifolia HOM05D004252 ORTHO05D005101 0.0e+00 1718.0 1720 56.8
CAN.G134.97 Capsicum annuum HOM05D004252 ORTHO05D005101 0.0e+00 1609.7 1318 65.4
Ah.06g192370 Amaranthus hybridus HOM05D004252 ORTHO05D005101 0.0e+00 1607.0 1374 64.5
arahy.Tifrunner.gnm1.ann1.795G7S Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1580.8 1215 69.0
BcaB04g19300 Brassica carinata HOM05D004252 ORTHO05D005101 0.0e+00 1496.9 1821 51.2
Mapoly0110s0011 Marchantia polymorpha HOM05D004252 ORTHO05D005101 0.0e+00 1378.2 2015 44.0
CARHR078990 Cardamine hirsuta HOM05D004252 ORTHO05D005101 0.0e+00 1300.4 1213 61.9
SEGI_19302 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 0.0e+00 1273.1 1382 54.4
SGA_v2.0_scaffold172G38984 Striga asiatica HOM05D004252 ORTHO05D005101 0.0e+00 1247.6 1006 66.8
CDE02G1705 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1243.0 1138 60.7
SMO118G0536 Selaginella moellendorffii HOM05D004252 ORTHO05D005101 0.0e+00 1236.5 1860 43.3
FAN14G3887 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 1223.0 891 72.6
AagrBONN_evm.TU.Sc2ySwM_368.2529 Anthoceros agrestis HOM05D004252 ORTHO05D005101 0.0e+00 1206.8 1964 41.0
Pp3c9_5080 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1186.8 1975 40.0
Pp3c9_4280 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1164.1 2020 39.0
Oeu027473.1 Olea europaea HOM05D004252 ORTHO05D005101 3.3e-270 936.4 1381 44.0
SHI18417 Sapria himalayana HOM05D004252 ORTHO05D005101 3.7e-261 906.4 1505 40.9
CDE02G2007 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 4.4e-230 803.1 653 64.3
Cpa.g.sc2756.2 Carica papaya HOM05D004252 ORTHO05D005101 2.0e-227 794.3 519 79.0
arahy.Tifrunner.gnm1.ann1.8T8W7S Arachis hypogaea HOM05D004252 ORTHO05D005101 1.8e-215 754.6 610 66.2
CAN.G134.96 Capsicum annuum HOM05D004252 ORTHO05D005101 1.1e-207 728.8 483 77.2
Ah.06g192380 Amaranthus hybridus HOM05D004252 ORTHO05D005101 3.0e-194 684.1 487 73.3
arahy.Tifrunner.gnm1.ann1.E2R4RP Arachis hypogaea HOM05D004252 ORTHO05D005101 7.1e-188 662.9 556 64.7
Aqoxy1G03371 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 4.6e-187 660.2 487 73.7
Atru.chr2.824 Acer truncatum HOM05D004252 ORTHO05D005101 1.4e-180 638.6 479 72.4
Cpa.g.c42029 Carica papaya HOM05D004252 ORTHO05D005101 6.9e-175 619.8 360 85.8
Atru.chr2.822 Acer truncatum HOM05D004252 ORTHO05D005101 1.5e-169 602.1 370 84.3
Oeu027472.1 Olea europaea HOM05D004252 ORTHO05D005101 1.5e-166 592.0 361 81.7
SHI18418 Sapria himalayana HOM05D004252 ORTHO05D005101 9.3e-164 582.8 623 53.6
Os08g0332800 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 2.3e-162 578.2 441 65.8
Dinv08152 Davidia involucrata HOM05D004252 ORTHO05D005101 3.7e-160 570.9 340 87.4
arahy.Tifrunner.gnm1.ann1.82F4VT Arachis hypogaea HOM05D004252 ORTHO05D005101 1.9e-148 531.9 401 70.1
Cpa.g.sc2756.3 Carica papaya HOM05D004252 ORTHO05D005101 2.0e-142 511.9 439 64.7
Oeu021056.1 Olea europaea HOM05D004252 ORTHO05D005101 1.5e-137 495.7 324 74.4
Os08g0333000 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 5.7e-137 493.8 391 69.8
Atru.chr2.823 Acer truncatum HOM05D004252 ORTHO05D005101 7.2e-116 423.7 259 83.0
Cpa.g.sc2756.1 Carica papaya HOM05D004252 ORTHO05D005101 8.0e-115 420.2 268 86.9
HanXRQChr13g0410791 Helianthus annuus HOM05D004252 ORTHO05D005101 1.1e-76 293.5 301 59.8
HanXRQChr01g0016721 Helianthus annuus HOM05D004252 ORTHO05D005101 2.5e-76 292.4 305 59.0
HanXRQChr10g0278361 Helianthus annuus HOM05D004252 ORTHO05D005101 2.1e-75 289.3 306 59.2
Atru.chr2.825 Acer truncatum HOM05D004252 ORTHO05D005101 3.0e-53 215.7 131 80.9
Atru.chr2.826 Acer truncatum HOM05D004252 ORTHO05D005101 2.5e-47 196.1 158 68.4
SEGI_18631 Sequoiadendron giganteum HOM05D000173 ORTHO05D006747 3.2e-23 115.9 141 48.2
PRCOL_00001722 Prasinoderma coloniale HOM05D000936 ORTHO05D005107 9.1e-18 97.8 627 22.3
Cpa.g.sc1346.1 Carica papaya HOM05D004252 ORTHO05D005101 4.5e-17 95.5 90 61.1
Sopen00g013550 Solanum pennellii HOM05D004252 ORTHO05D005101 6.5e-16 91.7 91 57.1
SEGI_17147 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 3.2e-15 89.4 66 69.7
Psat3g129120 Pisum sativum HOM05D004252 ORTHO05D005101 4.7e-14 85.5 70 60.0
CAN.G1116.5 Capsicum annuum HOM05D004252 ORTHO05D005101 8.0e-14 84.7 90 53.3
Psat3g129080 Pisum sativum HOM05D004252 ORTHO05D005101 1.4e-13 84.0 70 58.6
Gohir.D03G054650 Gossypium hirsutum HOM05D004252 ORTHO05D005101 8.8e-13 81.3 39 87.2
Gohir.D01G110850 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.2e-12 80.9 34 100.0
Gohir.D04G023525 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.2e-12 80.9 34 100.0
Gohir.D10G142750 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.2e-12 80.9 34 100.0
Gohir.D12G169250 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.2e-12 80.9 34 100.0
Gorai.004G036500 Gossypium raimondii HOM05D004252 ORTHO05D005101 1.2e-12 80.9 34 100.0
MCO11G870 Micromonas commoda HOM05D004252 ORTHO05D005101 1.2e-12 80.9 173 28.9
SEGI_02854 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 9.7e-12 77.8 90 50.0
DCAR_027576 Daucus carota HOM05D004252 ORTHO05D005101 1.4e-10 73.9 96 50.0
Nn3g17882 Nelumbo nucifera HOM05D004252 ORTHO05D005101 1.2e-09 70.9 69 60.9
PGR031G0210 Punica granatum HOM05D004252 ORTHO05D005101 3.8e-08 65.9 37 86.5
Pp3c15_3250 Physcomitrium patens HOM05D004252 ORTHO05D005101 1.1e-07 64.3 187 29.4
Cre03.g190550 Chlamydomonas reinhardtii HOM05D004252 ORTHO05D005101 1.9e-07 63.5 164 29.3


User provided reference genes

Program Settings