Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p023964 Quercus lobata HOM05D006377 ORTHO05D008001 3.4e-104 381.7 197 100.0
QL03p023258 Quercus lobata HOM05D006377 ORTHO05D008001 1.4e-102 376.3 197 97.0
CiPaw.08G178700 Carya illinoinensis HOM05D006377 ORTHO05D008001 6.0e-85 317.8 203 79.8
Haze_04319 Corylus avellana HOM05D006377 ORTHO05D008001 1.2e-82 310.1 198 80.8
Cfa006472 Carpinus fangiana HOM05D006377 ORTHO05D008001 1.8e-81 306.2 198 79.8
Prupe.6G338600 Prunus persica HOM05D006377 ORTHO05D008001 5.2e-73 278.1 212 72.2
FvH4_6g03680 Fragaria vesca HOM05D006377 ORTHO05D008001 3.4e-72 275.4 199 72.4
RcHm_v2.0_Chr3g0452211 Rosa chinensis HOM05D006377 ORTHO05D008001 1.3e-71 273.5 199 71.4
FAN14G3144 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.1e-70 270.4 199 71.4
FAN05G1987 Fragaria x ananassa HOM05D006377 ORTHO05D008001 2.4e-70 269.2 198 71.2
FAN05G4075 Fragaria x ananassa HOM05D006377 ORTHO05D008001 5.4e-70 268.1 198 70.7
MD12G1236300 Malus domestica HOM05D006377 ORTHO05D008001 1.5e-67 260.0 210 67.6
CSS0017897 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 2.5e-67 259.2 199 69.3
FAN09G4008 Fragaria x ananassa HOM05D006377 ORTHO05D008001 2.1e-66 256.1 192 69.8
CSS0039444 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 2.8e-66 255.8 199 68.3
MD04G1219300 Malus domestica HOM05D006377 ORTHO05D008001 1.4e-65 253.4 221 66.5
TAR365G0273 Trochodendron aralioides HOM05D006377 ORTHO05D008001 3.1e-65 252.3 200 67.0
ClCG02G016370 Citrullus lanatus HOM05D006377 ORTHO05D008001 4.0e-65 251.9 196 67.9
Potri.013G035700 Populus trichocarpa HOM05D006377 ORTHO05D008001 4.4e-64 248.4 206 67.0
vmacro05068 Vaccinium macrocarpon HOM05D006377 ORTHO05D008001 9.9e-64 247.3 214 62.1
Nn2g12517 Nelumbo nucifera HOM05D006377 ORTHO05D008001 1.3e-63 246.9 197 65.5
MELO3C004358.2 Cucumis melo HOM05D006377 ORTHO05D008001 3.8e-63 245.4 195 66.7
Thecc.05G289700 Theobroma cacao HOM05D006377 ORTHO05D008001 8.4e-63 244.2 208 68.8
CsaV3_2G004360 Cucumis sativus L. HOM05D006377 ORTHO05D008001 1.1e-62 243.8 197 67.0
Gorai.007G285800 Gossypium raimondii HOM05D006377 ORTHO05D008001 1.9e-62 243.0 201 65.7
Ciclev10002532m.g Citrus clementina HOM05D006377 ORTHO05D008001 4.2e-62 241.9 209 67.9
Gohir.D11G265800 Gossypium hirsutum HOM05D006377 ORTHO05D008001 7.1e-62 241.1 201 65.2
Hma1.2p1_0332F.1_g127770 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 7.1e-62 241.1 197 70.1
TWI36G1766 Tripterygium wilfordii HOM05D006377 ORTHO05D008001 1.2e-61 240.4 199 66.8
Sed0019582 Sechium edule HOM05D006377 ORTHO05D008001 1.6e-61 240.0 190 65.3
Manes.08G127500 Manihot esculenta HOM05D006377 ORTHO05D008001 2.1e-61 239.6 214 68.2
EL10Ac4g09192 Beta vulgaris HOM05D006377 ORTHO05D008001 2.7e-61 239.2 205 63.9
PGR004G2824 Punica granatum HOM05D006377 ORTHO05D008001 2.7e-61 239.2 207 66.7
Gohir.A11G256100 Gossypium hirsutum HOM05D006377 ORTHO05D008001 4.6e-61 238.4 201 64.7
Potri.005G049000 Populus trichocarpa HOM05D006377 ORTHO05D008001 6.0e-61 238.0 212 63.2
THA.LOC104805815 Tarenaya hassleriana HOM05D006377 ORTHO05D008001 6.0e-61 238.0 206 62.1
Duzib177G1058 Durio zibethinus HOM05D006377 ORTHO05D008001 1.0e-60 237.3 211 68.2
Phvul.006G099300 Phaseolus vulgaris HOM05D006377 ORTHO05D008001 1.3e-60 236.9 198 69.2
Sc20g0000200 Simmondsia chinensis HOM05D006377 ORTHO05D008001 1.1e-59 233.8 197 62.4
Glyma.03G245100 Glycine max HOM05D006377 ORTHO05D008001 1.5e-59 233.4 187 67.9
VMungo0540G1412 Vigna mungo HOM05D006377 ORTHO05D008001 3.3e-59 232.3 200 68.5
Ah.06g192660 Amaranthus hybridus HOM05D006377 ORTHO05D008001 5.6e-59 231.5 206 65.5
Cc02_g31420 Coffea canephora HOM05D006377 ORTHO05D008001 5.6e-59 231.5 211 60.7
Lj1g0014721 Lotus japonicus HOM05D006377 ORTHO05D008001 2.1e-58 229.6 198 65.2
Ca_09403_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 2.8e-58 229.2 191 67.5
Ca_30164_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 2.8e-58 229.2 191 67.5
Rhsim07G0175800 Rhododendron simsii HOM05D006377 ORTHO05D008001 3.6e-58 228.8 211 60.2
TPR.G7004 Trifolium pratense HOM05D006377 ORTHO05D008001 6.2e-58 228.0 191 65.4
Actinidia05760 Actinidia chinensis HOM05D006377 ORTHO05D008001 8.1e-58 227.6 202 62.4
ECA238G1597 Erigeron canadensis HOM05D006377 ORTHO05D008001 1.1e-57 227.3 193 64.2
Lalb_Chr15g0076921 Lupinus albus HOM05D006377 ORTHO05D008001 1.4e-57 226.9 189 65.6
Medtr7g114590 Medicago truncatula HOM05D006377 ORTHO05D008001 1.8e-57 226.5 194 63.4
FAN02G4534 Fragaria x ananassa HOM05D006377 ORTHO05D008001 4.0e-57 225.3 150 78.7
Sabra05G0044300 Salix brachista HOM05D006377 ORTHO05D008001 4.0e-57 225.3 204 61.8
CAN.G134.174 Capsicum annuum HOM05D006377 ORTHO05D008001 9.0e-57 224.2 199 66.8
Dinv11572 Davidia involucrata HOM05D006377 ORTHO05D008001 9.0e-57 224.2 196 67.9
Sopen01g041500 Solanum pennellii HOM05D006377 ORTHO05D008001 9.0e-57 224.2 206 65.0
Nitab4.5_0002361g0100 Nicotiana tabacum HOM05D006377 ORTHO05D008001 1.2e-56 223.8 206 65.0
Cpa.g.sc264.18 Carica papaya HOM05D006377 ORTHO05D008001 2.0e-56 223.0 120 86.7
CDE12G0044 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 2.0e-56 223.0 199 62.3
PGSC0003DMG400022504 Solanum tuberosum HOM05D006377 ORTHO05D008001 2.0e-56 223.0 205 65.4
Peaxi162Scf00404g00014 Petunia axillaris HOM05D006377 ORTHO05D008001 4.5e-56 221.9 197 60.9
PSO210G5336 Papaver somniferum HOM05D006377 ORTHO05D008001 5.8e-56 221.5 205 59.0
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 7.6e-56 221.1 198 62.1
HanXRQChr04g0094091 Helianthus annuus HOM05D006377 ORTHO05D008001 9.9e-56 220.7 179 67.6
Lsat_1_v5_gn_2_67840 Lactuca sativa HOM05D006377 ORTHO05D008001 9.9e-56 220.7 179 67.0
MBI19_g37073_MAGBIO Magnolia biondii HOM05D006377 ORTHO05D008001 1.3e-55 220.3 202 63.4
Lj7P475T32 Lonicera japonica HOM05D006377 ORTHO05D008001 1.7e-55 219.9 205 65.9
Solyc01g097910.2 Solanum lycopersicum HOM05D006377 ORTHO05D008001 1.7e-55 219.9 207 63.8
Aqoxy2G02484 Aquilegia oxysepala HOM05D006377 ORTHO05D008001 2.9e-55 219.2 218 58.3
MSTRG.3650 Avicennia marina HOM05D006377 ORTHO05D008001 3.8e-55 218.8 208 59.6
Nitab4.5_0002840g0030 Nicotiana tabacum HOM05D006377 ORTHO05D008001 3.8e-55 218.8 205 64.4
SalBow5G2979 Salvia bowleyana HOM05D006377 ORTHO05D008001 4.9e-55 218.4 197 62.9
Atru.chr2.718 Acer truncatum HOM05D006377 ORTHO05D008001 6.4e-55 218.0 123 82.9
arahy.Tifrunner.gnm1.ann1.VW98FE Arachis hypogaea HOM05D006377 ORTHO05D008001 8.4e-55 217.6 120 85.0
Oeu012478.1 Olea europaea HOM05D006377 ORTHO05D008001 1.9e-54 216.5 201 61.7
Oeu027050.1 Olea europaea HOM05D006377 ORTHO05D008001 9.3e-54 214.2 197 61.4
PSO761G0064 Papaver somniferum HOM05D006377 ORTHO05D008001 3.0e-52 209.1 210 55.7
SGA_v2.0_scaffold35G13993 Striga asiatica HOM05D006377 ORTHO05D008001 6.7e-52 208.0 158 67.7
AT1G54500 Arabidopsis thaliana HOM05D006377 ORTHO05D008001 1.1e-51 207.2 200 61.5
Aa31LG2G12300 Aethionema arabicum HOM05D006377 ORTHO05D008001 1.5e-51 206.8 200 56.5
Carub.0002s0934 Capsella rubella HOM05D006377 ORTHO05D008001 2.5e-51 206.1 194 60.3
CARHR055600 Cardamine hirsuta HOM05D006377 ORTHO05D008001 2.5e-51 206.1 118 80.5
AL1G64910 Arabidopsis lyrata HOM05D006377 ORTHO05D008001 3.3e-51 205.7 192 59.4
Migut.E01572 Erythranthe guttata HOM05D006377 ORTHO05D008001 3.3e-51 205.7 202 55.9
Sabra13G0035000 Salix brachista HOM05D006377 ORTHO05D008001 9.6e-51 204.1 169 71.6
Actinidia30919 Actinidia chinensis HOM05D006377 ORTHO05D008001 1.6e-50 203.4 173 63.0
SpUn0001_0720 Schrenkiella parvula HOM05D006377 ORTHO05D008001 2.1e-50 203.0 196 58.7
Thhalv10023702m.g Eutrema salsugineum HOM05D006377 ORTHO05D008001 6.2e-50 201.4 158 62.7
BcaB02g08603 Brassica carinata HOM05D006377 ORTHO05D008001 1.1e-49 200.7 163 64.4
unitig_0.g1675 Utricularia gibba HOM05D006377 ORTHO05D008001 1.4e-49 200.3 187 56.7
Os08g0323400 Oryza sativa ssp. japonica HOM05D006377 ORTHO05D008001 3.1e-49 199.1 118 77.1
HPP92_001948 Vanilla planifolia HOM05D006377 ORTHO05D008001 4.0e-49 198.7 200 55.5
Duzib128G0229 Durio zibethinus HOM05D006377 ORTHO05D008001 1.2e-48 197.2 176 64.8
C04p41160 Brassica napus HOM05D006377 ORTHO05D008001 1.5e-48 196.8 205 54.6
BolC4t25698H Brassica oleracea HOM05D006377 ORTHO05D008001 1.5e-48 196.8 205 54.6
BraA04t16445Z Brassica rapa HOM05D006377 ORTHO05D008001 1.5e-48 196.8 197 55.8
Psat5g039080 Pisum sativum HOM05D006377 ORTHO05D008001 3.4e-48 195.7 171 64.9
A04p07500 Brassica napus HOM05D006377 ORTHO05D008001 4.5e-48 195.3 199 55.8
Zm00001eb140200 Zea mays HOM05D006377 ORTHO05D008001 4.5e-48 195.3 152 63.8
BcaC02g09303 Brassica carinata HOM05D006377 ORTHO05D008001 7.6e-48 194.5 196 55.6
Manes.09G157000 Manihot esculenta HOM05D006377 ORTHO05D008001 1.9e-46 189.9 175 64.6
Zm00001eb061720 Zea mays HOM05D006377 ORTHO05D008001 1.9e-46 189.9 113 74.3
ATR0796G227 Amborella trichopoda HOM05D006377 ORTHO05D008001 4.2e-46 188.7 105 81.0
Zm00001eb061700 Zea mays HOM05D006377 ORTHO05D008001 4.2e-46 188.7 149 63.8
AUR62000968 Chenopodium quinoa HOM05D006377 ORTHO05D008001 1.6e-45 186.8 195 56.9
Zm00001eb061690 Zea mays HOM05D006377 ORTHO05D008001 1.6e-45 186.8 113 73.5
Zm00001eb061670 Zea mays HOM05D006377 ORTHO05D008001 1.8e-44 183.3 134 61.9
Pp3c1_22450 Physcomitrium patens HOM05D006377 ORTHO05D008001 2.3e-44 183.0 136 65.4
AagrBONN_evm.TU.Sc2ySwM_368.50 Anthoceros agrestis HOM05D006377 ORTHO05D008001 3.0e-44 182.6 119 68.9
AagrBONN_evm.TU.Sc2ySwM_344.5347 Anthoceros agrestis HOM05D006377 ORTHO05D008001 3.9e-44 182.2 119 68.1
SEGI_38373 Sequoiadendron giganteum HOM05D006377 ORTHO05D008001 1.5e-43 180.3 206 51.0
Pp3c2_13970 Physcomitrium patens HOM05D006377 ORTHO05D008001 7.4e-43 177.9 108 75.9
Mapoly0032s0089 Marchantia polymorpha HOM05D006377 ORTHO05D008001 6.2e-42 174.9 111 71.2
AagrBONN_evm.TU.Sc2ySwM_368.3396 Anthoceros agrestis HOM05D006377 ORTHO05D008001 8.2e-42 174.5 125 63.2
Zm00001eb061710 Zea mays HOM05D006377 ORTHO05D008001 2.4e-41 172.9 149 61.1
SMO137G0026 Selaginella moellendorffii HOM05D006377 ORTHO05D008001 4.5e-40 168.7 107 70.1
CBR_g55374 Chara braunii HOM05D006377 ORTHO05D008001 1.2e-37 160.6 112 63.4
AUR62004997 Chenopodium quinoa HOM05D006377 ORTHO05D008001 2.1e-37 159.8 177 54.8
unitig_748.g7013 Utricularia gibba HOM05D000757 ORTHO05D000622 7.9e-37 157.9 137 55.5
Hma1.2p1_0332F.1_g127760 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 2.3e-36 156.4 147 62.6
DCAR_009137 Daucus carota HOM05D006377 ORTHO05D008001 1.3e-34 150.6 153 56.2
Cre07.g315150 Chlamydomonas reinhardtii HOM05D006377 ORTHO05D008001 1.6e-29 133.7 119 50.4
MCO15G508 Micromonas commoda HOM05D006377 ORTHO05D008001 2.1e-29 133.3 115 53.0
PRCOL_00004455 Prasinoderma coloniale HOM05D006377 ORTHO05D008001 1.2e-24 117.5 104 52.9
Zm00001eb061680 Zea mays HOM05D006377 ORTHO05D008001 2.9e-23 112.8 116 43.1
Hma1.2p1_0332F.1_g127740 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 3.2e-14 82.8 88 48.9
Actinidia36920 Actinidia chinensis HOM05D006377 ORTHO05D057244 2.0e-08 63.5 107 39.3


User provided reference genes

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