Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p018747 Quercus lobata HOM05D002270 ORTHO05D002866 0.0e+00 1987.6 1122 100.0
QL05p009063 Quercus lobata HOM05D002270 ORTHO05D002866 0.0e+00 1476.1 2202 49.0
CiPaw.01G221300 Carya illinoinensis HOM05D002270 ORTHO05D002866 0.0e+00 1154.0 926 70.4
Haze_16005 Corylus avellana HOM05D002270 ORTHO05D002866 0.0e+00 1144.4 929 72.6
Cfa003549 Carpinus fangiana HOM05D002270 ORTHO05D002866 0.0e+00 1140.6 970 71.1
GSVIVG01016794001 Vitis vinifera HOM05D002270 ORTHO05D002866 1.1e-276 957.2 905 62.4
Prupe.3G044200 Prunus persica HOM05D002270 ORTHO05D002866 9.1e-271 937.6 919 58.7
Potri.017G039100 Populus trichocarpa HOM05D002270 ORTHO05D002866 4.2e-268 928.7 935 59.8
Dinv37885 Davidia involucrata HOM05D002270 ORTHO05D002866 2.7e-267 926.0 848 62.3
Ciclev10024676m.g Citrus clementina HOM05D002270 ORTHO05D002866 2.3e-266 922.9 922 60.6
Sabra17G0026200 Salix brachista HOM05D002270 ORTHO05D002866 1.7e-264 916.8 935 59.0
Manes.04G142500 Manihot esculenta HOM05D002270 ORTHO05D002866 6.5e-253 878.2 942 58.3
Actinidia32171 Actinidia chinensis HOM05D002270 ORTHO05D002866 4.0e-250 869.0 929 56.7
CSS0023775 Camellia sinensis var. sinensis HOM05D002270 ORTHO05D002866 1.3e-248 864.0 920 56.2
Atru.chr1.3816 Acer truncatum HOM05D002270 ORTHO05D002866 7.2e-244 848.2 930 58.0
Thecc.06G117100 Theobroma cacao HOM05D002270 ORTHO05D002866 1.4e-242 844.0 937 57.5
Atru.chr1.3813 Acer truncatum HOM05D002270 ORTHO05D002866 1.1e-239 834.3 929 57.8
Gohir.D10G058500 Gossypium hirsutum HOM05D002270 ORTHO05D002866 1.0e-237 827.8 1012 51.2
vmacro22216 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 3.8e-237 825.9 994 51.6
Gorai.011G062600 Gossypium raimondii HOM05D002270 ORTHO05D002866 1.9e-236 823.5 993 51.7
Lj5C40G12 Lonicera japonica HOM05D002270 ORTHO05D002866 1.4e-234 817.4 989 52.2
Nn8g38745 Nelumbo nucifera HOM05D002270 ORTHO05D002866 8.9e-234 814.7 929 54.3
TWI09G1355 Tripterygium wilfordii HOM05D002270 ORTHO05D002866 1.3e-232 810.8 919 55.4
MD05G1009600 Malus domestica HOM05D002270 ORTHO05D002866 3.7e-232 809.3 934 53.2
CANSAT56G0650 Cannabis sativa HOM05D002270 ORTHO05D002866 3.2e-231 806.2 965 51.3
Gohir.A10G056600 Gossypium hirsutum HOM05D002270 ORTHO05D002866 9.2e-231 804.7 937 52.8
Duzib235G1111 Durio zibethinus HOM05D002270 ORTHO05D002866 3.9e-229 799.3 933 53.8
RcHm_v2.0_Chr2g0144641 Rosa chinensis HOM05D002270 ORTHO05D002866 6.6e-229 798.5 931 53.3
CsaV3_7G034610 Cucumis sativus L. HOM05D002270 ORTHO05D002866 1.9e-223 780.4 969 50.8
Rhsim07G0217300 Rhododendron simsii HOM05D002270 ORTHO05D002866 3.2e-223 779.6 931 53.3
MELO3C024369.2 Cucumis melo HOM05D002270 ORTHO05D002866 9.2e-223 778.1 967 50.9
Ca_23356_v3 Cicer arietinum L. HOM05D002270 ORTHO05D002866 2.7e-222 776.5 922 50.0
ClCG09G000860 Citrullus lanatus HOM05D002270 ORTHO05D002866 2.7e-222 776.5 916 52.2
Cc04_g01520 Coffea canephora HOM05D002270 ORTHO05D002866 5.4e-215 752.3 915 51.6
Psat4g180280 Pisum sativum HOM05D002270 ORTHO05D002866 6.0e-214 748.8 920 50.5
Aqoxy7G03985 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 1.3e-213 747.7 930 54.2
FvH4_6g34300 Fragaria vesca HOM05D002270 ORTHO05D002866 8.6e-213 745.0 966 49.8
Glyma.16G004800 Glycine max HOM05D002270 ORTHO05D002866 7.3e-212 741.9 966 48.9
Glyma.07G035600 Glycine max HOM05D002270 ORTHO05D002866 6.2e-211 738.8 964 49.6
Medtr8g018890 Medicago truncatula HOM05D002270 ORTHO05D002866 9.9e-209 731.5 920 49.9
FAN14G4121 Fragaria x ananassa HOM05D002270 ORTHO05D002866 2.4e-207 726.9 955 49.8
Lj3g0006373 Lotus japonicus HOM05D002270 ORTHO05D002866 4.6e-206 722.6 921 48.9
ECA232G3855 Erigeron canadensis HOM05D002270 ORTHO05D002866 3.0e-205 719.9 944 47.8
Nitab4.5_0003025g0020 Nicotiana tabacum HOM05D002270 ORTHO05D002866 9.6e-204 714.9 931 50.5
arahy.Tifrunner.gnm1.ann1.3D1K9T Arachis hypogaea HOM05D002270 ORTHO05D002866 1.2e-203 714.5 928 49.4
Lalb_Chr20g0113911 Lupinus albus HOM05D002270 ORTHO05D002866 1.2e-203 714.5 920 48.4
FAN05G0510 Fragaria x ananassa HOM05D002270 ORTHO05D002866 4.7e-203 712.6 965 48.7
Sopen04g028450 Solanum pennellii HOM05D002270 ORTHO05D002866 1.1e-202 711.4 1019 47.9
Solyc04g072260.3 Solanum lycopersicum HOM05D002270 ORTHO05D002866 5.2e-202 709.1 1025 49.9
Oeu039944.3 Olea europaea HOM05D002270 ORTHO05D002866 2.0e-201 707.2 931 47.8
CAN.G1010.9 Capsicum annuum HOM05D002270 ORTHO05D002866 3.4e-201 706.4 930 48.7
DCAR_014031 Daucus carota HOM05D002270 ORTHO05D002866 1.9e-199 700.7 931 49.7
Sed0013702 Sechium edule HOM05D002270 ORTHO05D002866 3.2e-199 699.9 921 49.3
FAN02G3927 Fragaria x ananassa HOM05D002270 ORTHO05D002866 4.2e-199 699.5 944 49.4
Nitab4.5_0000433g0200 Nicotiana tabacum HOM05D002270 ORTHO05D002866 4.2e-199 699.5 952 47.9
Sc15g0000370 Simmondsia chinensis HOM05D002270 ORTHO05D002866 7.8e-198 695.3 923 49.4
Phvul.010G134100 Phaseolus vulgaris HOM05D002270 ORTHO05D002866 3.0e-197 693.3 928 51.2
MBI17_g19031_MAGBIO Magnolia biondii HOM05D002270 ORTHO05D002866 1.3e-195 688.0 919 48.1
HanXRQChr09g0276661 Helianthus annuus HOM05D002270 ORTHO05D002866 2.1e-195 687.2 936 47.3
arahy.Tifrunner.gnm1.ann1.B3D1QM Arachis hypogaea HOM05D002270 ORTHO05D002866 1.8e-194 684.1 920 48.3
MSTRG.10966 Avicennia marina HOM05D002270 ORTHO05D002866 1.8e-194 684.1 922 48.4
VMungo0464G0658 Vigna mungo HOM05D002270 ORTHO05D002866 2.6e-193 680.2 909 50.3
PGR142G3590 Punica granatum HOM05D002270 ORTHO05D002866 2.9e-192 676.8 934 46.7
THA.LOC104805560 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 9.3e-191 671.8 931 46.5
Hma1.2p1_0291F.1_g115290 Hydrangea macrophylla HOM05D002270 ORTHO05D002866 7.9e-190 668.7 572 64.7
Peaxi162Scf00226g00823 Petunia axillaris HOM05D002270 ORTHO05D002866 7.3e-188 662.1 952 48.2
Hund05750 Selenicereus undatus HOM05D002270 ORTHO05D002866 2.1e-187 660.6 933 46.6
THA.LOC104807245 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 7.1e-183 645.6 936 46.0
Migut.H01763 Erythranthe guttata HOM05D002270 ORTHO05D002866 1.3e-179 634.8 934 48.1
AL2G25500 Arabidopsis lyrata HOM05D002270 ORTHO05D002866 2.2e-176 624.0 934 45.2
Lsat_1_v5_gn_4_95020 Lactuca sativa HOM05D002270 ORTHO05D002866 6.5e-176 622.5 923 45.2
PSO423G0075 Papaver somniferum HOM05D002270 ORTHO05D002866 1.3e-173 614.8 942 44.6
SGA_v2.0_scaffold71G23844 Striga asiatica HOM05D002270 ORTHO05D002866 1.3e-173 614.8 909 46.9
SalBow6G4013 Salvia bowleyana HOM05D002270 ORTHO05D002866 6.7e-173 612.5 918 45.9
AT1G67120 Arabidopsis thaliana HOM05D002270 ORTHO05D002866 4.3e-172 609.8 933 43.5
Aa31LG2G3520 Aethionema arabicum HOM05D002270 ORTHO05D002866 3.7e-171 606.7 933 45.3
PSO144G0138 Papaver somniferum HOM05D002270 ORTHO05D002866 4.1e-170 603.2 943 44.3
Rhsim08G0236800 Rhododendron simsii HOM05D002270 ORTHO05D002866 6.5e-168 595.9 984 42.9
AUR62001507 Chenopodium quinoa HOM05D002270 ORTHO05D002866 2.5e-167 594.0 930 45.5
AUR62009863 Chenopodium quinoa HOM05D002270 ORTHO05D002866 5.5e-167 592.8 927 44.3
Sp5g22050 Schrenkiella parvula HOM05D002270 ORTHO05D002866 2.7e-166 590.5 931 45.0
EL10Ac7g16387 Beta vulgaris HOM05D002270 ORTHO05D002866 8.7e-165 585.5 929 43.7
ATR0736G011 Amborella trichopoda HOM05D002270 ORTHO05D002866 1.1e-162 578.6 916 44.2
Carub.0002s1105 Capsella rubella HOM05D002270 ORTHO05D002866 6.9e-162 575.9 931 45.4
Carub.0002s1342 Capsella rubella HOM05D002270 ORTHO05D002866 1.4e-157 561.6 933 42.7
Thhalv10017991m.g Eutrema salsugineum HOM05D002270 ORTHO05D002866 1.5e-156 558.1 940 45.1
unitig_22.g5235 Utricularia gibba HOM05D002270 ORTHO05D002866 4.8e-155 553.1 855 45.3
C02p22490 Brassica napus HOM05D002270 ORTHO05D002866 5.9e-153 546.2 928 42.8
FAN09G1018 Fragaria x ananassa HOM05D002270 ORTHO05D002866 7.7e-153 545.8 670 51.0
HPP92_008118 Vanilla planifolia HOM05D002270 ORTHO05D002866 5.0e-152 543.1 913 42.6
BolC2t08403H Brassica oleracea HOM05D002270 ORTHO05D002866 3.2e-151 540.4 928 43.1
CARHR059570 Cardamine hirsuta HOM05D002270 ORTHO05D002866 4.1e-146 523.5 943 42.4
A02p14000 Brassica napus HOM05D002270 ORTHO05D002866 2.6e-145 520.8 932 42.8
BraA02t06460Z Brassica rapa HOM05D002270 ORTHO05D002866 5.9e-145 519.6 932 42.7
Ah.08g216550 Amaranthus hybridus HOM05D002270 ORTHO05D002866 5.9e-137 493.0 874 41.0
COL.COLO4_12564 Corchorus olitorius HOM05D002270 ORTHO05D002866 2.3e-133 481.1 546 52.7
BcaNung06980 Brassica carinata HOM05D002270 ORTHO05D002866 1.1e-130 472.2 904 40.7
QL01p054541 Quercus lobata HOM05D002270 ORTHO05D002866 1.6e-129 468.4 264 93.2
TAR636G2809 Trochodendron aralioides HOM05D002270 ORTHO05D002866 2.0e-129 468.0 592 50.2
Zm00001eb290580 Zea mays HOM05D002270 ORTHO05D002866 9.4e-127 459.1 915 38.0
Sed0006033 Sechium edule HOM05D002270 ORTHO05D002866 2.4e-122 444.5 357 67.5
Eucgr.J02835 Eucalyptus grandis HOM05D002270 ORTHO05D002866 6.8e-117 426.4 296 74.7
CDE12G0817 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 2.2e-115 421.4 406 58.6
Os10g0456900 Oryza sativa ssp. japonica HOM05D002270 ORTHO05D002866 2.9e-115 421.0 543 47.1
AagrBONN_evm.TU.Sc2ySwM_344.4174 Anthoceros agrestis HOM05D002270 ORTHO05D002866 8.9e-109 399.4 957 36.2
Mapoly0033s0024 Marchantia polymorpha HOM05D002270 ORTHO05D002866 5.8e-108 396.7 1001 36.8
TAR636G2258 Trochodendron aralioides HOM05D002270 ORTHO05D002866 7.3e-103 379.8 262 75.2
SEGI_29020 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 6.4e-99 366.7 663 37.9
CBR_g741 Chara braunii HOM05D002270 ORTHO05D002866 2.8e-94 351.3 554 40.1
Pp3c8_22130 Physcomitrium patens HOM05D002270 ORTHO05D002866 2.8e-94 351.3 923 34.2
SEGI_24649 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 8.1e-94 349.7 878 33.7
Eucgr.J02836 Eucalyptus grandis HOM05D002270 ORTHO05D002866 3.0e-80 304.7 581 40.3
TPR.G10921 Trifolium pratense HOM05D002270 ORTHO05D002866 1.3e-72 279.3 464 40.9
SEGI_09123 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 8.4e-67 260.0 477 38.2
TPR.G9775 Trifolium pratense HOM05D002270 ORTHO05D002866 2.3e-64 251.9 541 37.2
MCO14G006 Micromonas commoda HOM05D002270 ORTHO05D002866 6.7e-64 250.4 286 46.2
PGSC0003DMG400044228 Solanum tuberosum HOM05D002270 ORTHO05D002866 6.7e-64 250.4 403 43.7
COL.COLO4_30723 Corchorus olitorius HOM05D002270 ORTHO05D002866 1.4e-61 242.7 275 51.3
VMungo1080G1592 Vigna mungo HOM05D002270 ORTHO05D002866 1.8e-61 242.3 234 60.3
QL93p0356_0058 Quercus lobata HOM05D002270 ORTHO05D002866 1.3e-59 236.1 120 95.0
PRCOL_00003697 Prasinoderma coloniale HOM05D002270 ORTHO05D002866 1.7e-59 235.7 280 45.7
BcaC07g41079 Brassica carinata HOM05D002270 ORTHO05D002866 1.8e-56 225.7 206 62.1
Cpa.g.sc1872.2 Carica papaya HOM05D002270 ORTHO05D002866 6.9e-53 213.8 265 49.1
Cre03.g161800 Chlamydomonas reinhardtii HOM05D002270 ORTHO05D002866 2.0e-52 212.2 1055 26.2
Cpa.g.sc30.6 Carica papaya HOM05D002270 ORTHO05D002866 7.6e-52 210.3 253 48.6
Oeu047969.1 Olea europaea HOM05D002270 ORTHO05D002866 1.4e-45 189.5 253 41.5
BcaB03g13736 Brassica carinata HOM05D002270 ORTHO05D002866 6.9e-45 187.2 417 34.3
Aqoxy6G02932 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 1.3e-43 183.0 120 77.5
TPR.G51 Trifolium pratense HOM05D002270 ORTHO05D002866 1.1e-42 179.9 149 65.8
COL.COLO4_12565 Corchorus olitorius HOM05D002270 ORTHO05D002866 1.4e-42 179.5 244 49.2
Lsat_1_v5_gn_7_1960 Lactuca sativa HOM05D002270 ORTHO05D002866 5.5e-42 177.6 235 44.3
PSO210G4815 Papaver somniferum HOM05D002270 ORTHO05D002866 1.6e-41 176.0 365 41.1
TAR636G1145 Trochodendron aralioides HOM05D002270 ORTHO05D002866 3.3e-39 168.3 186 48.9
SHI16816 Sapria himalayana HOM05D002270 ORTHO05D002866 2.8e-38 165.2 287 37.6
Aqoxy6G02933 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 3.4e-36 158.3 193 46.6
TPR.G582 Trifolium pratense HOM05D002270 ORTHO05D002866 5.0e-35 154.5 175 49.7
CDE12G0087 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 1.1e-34 153.3 453 33.3
TPR.G29949 Trifolium pratense HOM05D002270 ORTHO05D002866 7.2e-34 150.6 216 41.7
ECA067G0003 Erigeron canadensis HOM05D002270 ORTHO05D002866 2.3e-32 145.6 708 26.7
Psat1g148840 Pisum sativum HOM05D002270 ORTHO05D012184 3.9e-32 144.8 176 46.6
BcaC05g27863 Brassica carinata HOM05D002270 ORTHO05D002866 6.7e-32 144.1 274 38.0
SMO141G0258 Selaginella moellendorffii HOM05D002270 ORTHO05D002866 8.8e-32 143.7 91 73.6
C05p38590 Brassica napus HOM05D002270 ORTHO05D002866 2.2e-30 139.0 241 38.2
TPR.G9785 Trifolium pratense HOM05D002270 ORTHO05D002866 4.8e-30 137.9 80 81.2
SEGI_39597 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 2.9e-27 128.6 272 34.2
VMungo0464G0518 Vigna mungo HOM05D002270 ORTHO05D002866 2.0e-23 115.9 117 49.6
SEGI_22737 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 1.7e-22 112.8 76 65.8
PGSC0003DMG400021645 Solanum tuberosum HOM05D002270 ORTHO05D002866 2.8e-22 112.1 226 38.5
QL05p008973 Quercus lobata HOM05D002270 ORTHO05D001155 5.3e-21 107.8 66 81.8
Aqoxy6G02934 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 1.6e-20 106.3 172 56.4
SEGI_22741 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 1.4e-16 93.2 268 26.5
SEGI_33198 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 3.0e-16 92.0 266 26.7
VMungo0464G1105 Vigna mungo HOM05D002270 ORTHO05D002866 4.0e-16 91.7 152 41.4
BolC5t32597H Brassica oleracea HOM05D002270 ORTHO05D002866 2.0e-15 89.4 449 33.9
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.4e-15 88.2 95 48.4
BolC8t51649H Brassica oleracea HOM05D002270 ORTHO05D002866 1.0e-11 77.0 115 41.7
VMungo0366G0001 Vigna mungo HOM05D002270 ORTHO05D002866 1.7e-11 76.3 65 60.0
QL05p008929 Quercus lobata HOM05D002270 ORTHO05D338108 3.8e-11 75.1 56 69.6
COL.COLO4_16853 Corchorus olitorius HOM05D000629 ORTHO05D016154 1.8e-08 66.2 67 56.7
SMO141G0121 Selaginella moellendorffii HOM05D002270 ORTHO05D002866 1.8e-08 66.2 44 61.4
Medtr8g019250 Medicago truncatula HOM05D002270 ORTHO05D002866 3.4e-07 62.0 81 45.7
TPR.G20824 Trifolium pratense HOM05D002270 ORTHO05D002866 3.4e-07 62.0 52 59.6
Psat4g085960 Pisum sativum HOM05D001676 ORTHO05D001539 1.3e-06 60.1 60 53.3


User provided reference genes

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