Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p017813 Quercus lobata HOM05D004380 ORTHO05D005134 1.0e-245 853.2 504 100.0
CiPaw.11G087400 Carya illinoinensis HOM05D004380 ORTHO05D005134 1.8e-173 613.2 511 70.5
Cfa012380 Carpinus fangiana HOM05D004380 ORTHO05D005134 6.5e-168 594.7 529 70.1
Haze_08305 Corylus avellana HOM05D004380 ORTHO05D005134 9.4e-159 564.3 557 69.3
TWI81G0890 Tripterygium wilfordii HOM05D004380 ORTHO05D005134 1.2e-137 494.2 617 52.7
GSVIVG01013206001 Vitis vinifera HOM05D004380 ORTHO05D005134 1.7e-136 490.3 511 65.8
CiPaw.04G096200 Carya illinoinensis HOM05D004380 ORTHO05D005134 5.2e-133 478.8 510 57.5
Cpa.g.sc69.34 Carica papaya HOM05D004380 ORTHO05D005134 4.8e-131 472.2 540 53.3
Manes.15G172200 Manihot esculenta HOM05D004380 ORTHO05D005134 3.5e-129 466.1 612 53.8
ClCG03G011240 Citrullus lanatus HOM05D004380 ORTHO05D005134 1.3e-128 464.2 563 52.9
Potri.003G087200 Populus trichocarpa HOM05D004380 ORTHO05D005134 1.3e-128 464.2 565 58.9
Medtr8g030840 Medicago truncatula HOM05D004380 ORTHO05D005134 1.7e-128 463.8 543 54.5
Migut.J01084 Erythranthe guttata HOM05D004380 ORTHO05D005134 2.1e-126 456.8 523 57.7
vmacro14143 Vaccinium macrocarpon HOM05D004380 ORTHO05D005134 1.8e-125 453.8 533 60.0
Actinidia10879 Actinidia chinensis HOM05D004380 ORTHO05D005134 5.2e-125 452.2 591 55.2
Lalb_Chr04g0258181 Lupinus albus HOM05D004380 ORTHO05D005134 2.6e-124 449.9 557 53.3
Rhsim07G0121900 Rhododendron simsii HOM05D004380 ORTHO05D005134 3.4e-124 449.5 516 57.2
THA.LOC104814403 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 4.4e-124 449.1 575 53.6
CsaV3_2G035720 Cucumis sativus L. HOM05D004380 ORTHO05D005134 6.3e-123 445.3 559 53.8
Lj3g0000626 Lotus japonicus HOM05D004380 ORTHO05D005134 2.4e-122 443.4 535 60.7
arahy.Tifrunner.gnm1.ann1.522STQ Arachis hypogaea HOM05D004380 ORTHO05D005134 3.1e-122 443.0 510 57.8
Sed0018208 Sechium edule HOM05D004380 ORTHO05D005134 3.1e-122 443.0 560 50.7
Thecc.05G299600 Theobroma cacao HOM05D004380 ORTHO05D005134 1.6e-121 440.7 538 59.1
ECA233G1538 Erigeron canadensis HOM05D004380 ORTHO05D005134 4.5e-121 439.1 520 58.5
Gorai.007G293700 Gossypium raimondii HOM05D004380 ORTHO05D005134 1.5e-119 434.1 601 51.6
Cc01_g02120 Coffea canephora HOM05D004380 ORTHO05D005134 2.5e-119 433.3 585 55.9
Gohir.A11G262400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 7.3e-119 431.8 609 49.9
SGA_v2.0_scaffold86G26890 Striga asiatica HOM05D004380 ORTHO05D005134 1.2e-118 431.0 509 55.0
DCAR_015696 Daucus carota HOM05D004380 ORTHO05D005134 1.6e-118 430.6 555 52.6
Haze_08308 Corylus avellana HOM05D004380 ORTHO05D005134 2.1e-118 430.3 497 65.6
Sabra03G0056900 Salix brachista HOM05D004380 ORTHO05D005134 8.0e-118 428.3 547 58.1
Prupe.8G202500 Prunus persica HOM05D004380 ORTHO05D005134 2.3e-117 426.8 514 53.7
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 4.0e-117 426.0 522 55.7
Atru.chr1.3775 Acer truncatum HOM05D004380 ORTHO05D005134 1.2e-116 424.5 472 61.4
Lsat_1_v5_gn_6_63641 Lactuca sativa HOM05D004380 ORTHO05D005134 5.7e-116 422.2 504 54.6
Dinv25182 Davidia involucrata HOM05D004380 ORTHO05D005134 9.8e-116 421.4 515 58.1
Duzib128G0331 Durio zibethinus HOM05D004380 ORTHO05D005134 9.2e-114 414.8 550 50.2
Glyma.07G070900 Glycine max HOM05D004380 ORTHO05D005134 1.6e-113 414.1 572 51.6
Gohir.D11G272400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 1.6e-113 414.1 593 52.8
Psat4g154840 Pisum sativum HOM05D004380 ORTHO05D005134 2.7e-113 413.3 513 53.8
Aa31LG9G15640 Aethionema arabicum HOM05D004380 ORTHO05D005134 4.6e-113 412.5 523 56.2
Phvul.010G098800 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 1.0e-112 411.4 587 51.6
VMungo0331G0855 Vigna mungo HOM05D004380 ORTHO05D005134 2.3e-112 410.2 548 55.1
CAN.G1336.5 Capsicum annuum HOM05D004380 ORTHO05D005134 3.9e-112 409.5 541 54.2
CANSAT21G1629 Cannabis sativa HOM05D004380 ORTHO05D005134 5.0e-112 409.1 504 56.0
AT1G31870 Arabidopsis thaliana HOM05D004380 ORTHO05D005134 7.3e-111 405.2 567 51.9
PGSC0003DMG400022576 Solanum tuberosum HOM05D004380 ORTHO05D005134 9.5e-111 404.8 591 49.7
Ah.09g224390 Amaranthus hybridus HOM05D004380 ORTHO05D005134 1.2e-110 404.4 561 52.4
Thhalv10007193m.g Eutrema salsugineum HOM05D004380 ORTHO05D005134 2.8e-110 403.3 586 51.5
MD16G1006500 Malus domestica HOM05D004380 ORTHO05D005134 2.8e-110 403.3 513 53.4
HanXRQChr16g0500491 Helianthus annuus HOM05D004380 ORTHO05D005134 6.8e-109 398.7 513 53.0
Hma1.2p1_0311F.1_g121260 Hydrangea macrophylla HOM05D004380 ORTHO05D005134 4.4e-108 396.0 528 57.0
Peaxi162Scf01164g00006 Petunia axillaris HOM05D004380 ORTHO05D005134 7.5e-108 395.2 604 51.7
TAR629G2821 Trochodendron aralioides HOM05D004380 ORTHO05D005134 2.2e-107 393.7 514 54.9
Nn6g33684 Nelumbo nucifera HOM05D004380 ORTHO05D005134 3.7e-107 392.9 658 46.8
PSO832G0693 Papaver somniferum HOM05D004380 ORTHO05D005134 5.4e-106 389.0 517 55.1
Solyc03g033950.4 Solanum lycopersicum HOM05D004380 ORTHO05D005134 2.7e-105 386.7 541 50.3
Carub.0001s3020 Capsella rubella HOM05D004380 ORTHO05D005134 7.8e-105 385.2 599 47.7
PSO782G4920 Papaver somniferum HOM05D004380 ORTHO05D005134 7.8e-105 385.2 517 54.0
AL1G45970 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 1.0e-104 384.8 569 50.4
PSO063G6462 Papaver somniferum HOM05D004380 ORTHO05D005134 2.3e-104 383.6 517 54.4
RcHm_v2.0_Chr4g0446311 Rosa chinensis HOM05D004380 ORTHO05D005134 5.0e-104 382.5 508 56.3
Ciclev10033653m.g Citrus clementina HOM05D004380 ORTHO05D005134 1.5e-103 380.9 593 50.3
CDE02G1296 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 2.8e-102 376.7 582 48.5
BcaB03g13784 Brassica carinata HOM05D004380 ORTHO05D005134 4.7e-102 375.9 573 46.8
unitig_21.g20505 Utricularia gibba HOM05D004380 ORTHO05D005134 1.4e-101 374.4 536 49.8
Oeu045705.2 Olea europaea HOM05D004380 ORTHO05D005134 3.1e-101 373.2 510 52.9
BcaC05g27949 Brassica carinata HOM05D004380 ORTHO05D005134 1.2e-100 371.3 567 48.3
C05p39530 Brassica napus HOM05D004380 ORTHO05D005134 1.2e-100 371.3 565 48.5
CARHR031210 Cardamine hirsuta HOM05D004380 ORTHO05D005134 2.6e-100 370.2 588 46.4
A05p25450 Brassica napus HOM05D004380 ORTHO05D005134 3.4e-100 369.8 582 46.9
HanXRQChr12g0372541 Helianthus annuus HOM05D004380 ORTHO05D005134 7.5e-100 368.6 514 53.7
BraA05t21429Z Brassica rapa HOM05D004380 ORTHO05D005134 1.3e-99 367.9 582 45.9
BolC5t32694H Brassica oleracea HOM05D004380 ORTHO05D005134 2.2e-99 367.1 596 46.5
FAN17G2609 Fragaria x ananassa HOM05D004380 ORTHO05D005134 3.7e-99 366.3 519 55.3
EL10Ac4g09041 Beta vulgaris HOM05D004380 ORTHO05D005134 4.9e-99 365.9 573 51.7
FAN22G0510 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.1e-98 364.8 520 52.5
Nitab4.5_0005084g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 1.9e-98 364.0 547 51.2
arahy.Tifrunner.gnm1.ann1.MX4EXC Arachis hypogaea HOM05D004380 ORTHO05D005134 3.2e-98 363.2 472 52.8
FvH4_4g36560 Fragaria vesca HOM05D004380 ORTHO05D005134 5.4e-98 362.5 519 50.5
FAN12G0331 Fragaria x ananassa HOM05D004380 ORTHO05D005134 5.4e-98 362.5 519 50.5
Lj6C290G5 Lonicera japonica HOM05D004380 ORTHO05D005134 1.3e-96 357.8 586 50.2
Sopen03g006700 Solanum pennellii HOM05D004380 ORTHO05D005134 5.1e-96 355.9 529 48.8
FAN07G2732 Fragaria x ananassa HOM05D004380 ORTHO05D005134 2.5e-95 353.6 530 52.3
Aqoxy3G00393 Aquilegia oxysepala HOM05D004380 ORTHO05D005134 1.8e-93 347.4 561 49.0
AUR62007222 Chenopodium quinoa HOM05D004380 ORTHO05D005134 6.4e-91 339.0 573 45.5
COL.COLO4_13527 Corchorus olitorius HOM05D004380 ORTHO05D005134 1.7e-88 330.9 223 77.1
Os08g0178300 Oryza sativa ssp. japonica HOM05D004380 ORTHO05D005134 3.9e-88 329.7 590 43.9
QL12p007207 Quercus lobata HOM05D004380 ORTHO05D005134 3.6e-86 323.2 295 78.0
Sp1g27590 Schrenkiella parvula HOM05D004380 ORTHO05D005134 6.2e-86 322.4 489 51.3
CDE11G0710 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 9.3e-82 308.5 541 39.9
AUR62018778 Chenopodium quinoa HOM05D004380 ORTHO05D005134 1.7e-80 304.3 483 47.0
CAN.G1823.5 Capsicum annuum HOM05D004380 ORTHO05D005134 4.8e-78 296.2 256 63.7
Nitab4.5_0008421g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 1.8e-77 294.3 551 46.3
MELO3C024775.2 Cucumis melo HOM05D004380 ORTHO05D005134 3.4e-76 290.0 478 46.7
Actinidia31472 Actinidia chinensis HOM05D004380 ORTHO05D005134 1.4e-74 284.6 395 47.1
ATR0665G406 Amborella trichopoda HOM05D004380 ORTHO05D005134 3.9e-72 276.6 638 41.7
arahy.Tifrunner.gnm1.ann1.ARJY2C Arachis hypogaea HOM05D004380 ORTHO05D005134 6.4e-67 259.2 280 55.0
Phvul.011G076400 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 7.1e-66 255.8 189 72.0
TPR.G23111 Trifolium pratense HOM05D004380 ORTHO05D005134 3.9e-64 250.0 147 82.3
CAN.G248.21 Capsicum annuum HOM05D004380 ORTHO05D005134 2.5e-63 247.3 222 57.7
Mapoly0062s0011 Marchantia polymorpha HOM05D004380 ORTHO05D005134 3.3e-63 246.9 213 61.0
Sc22g0001370 Simmondsia chinensis HOM05D004380 ORTHO05D005134 4.0e-61 240.0 514 45.9
Cpa.g.sc69.32 Carica papaya HOM05D004380 ORTHO05D005134 1.3e-59 235.0 156 75.6
Sed0024296 Sechium edule HOM05D004380 ORTHO05D005134 1.3e-59 235.0 199 66.8
Hund11501 Selenicereus undatus HOM05D004380 ORTHO05D005134 1.3e-59 235.0 148 77.0
AagrBONN_evm.TU.Sc2ySwM_117.3835 Anthoceros agrestis HOM05D004380 ORTHO05D005134 2.2e-59 234.2 254 52.0
THA.LOC104812727 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 6.5e-59 232.6 283 54.1
Aa31LG9G6660 Aethionema arabicum HOM05D004380 ORTHO05D005134 3.2e-58 230.3 151 75.5
SMO144G0180 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 4.6e-57 226.5 219 55.7
SEGI_39298 Sequoiadendron giganteum HOM05D004380 ORTHO05D005134 6.0e-57 226.1 582 38.5
HPP92_020120 Vanilla planifolia HOM05D004380 ORTHO05D005134 6.0e-57 226.1 168 70.2
arahy.Tifrunner.gnm1.ann1.I1PL9V Arachis hypogaea HOM05D004380 ORTHO05D005134 7.9e-57 225.7 160 74.4
Oeu037610.2 Olea europaea HOM05D004380 ORTHO05D005134 1.0e-56 225.3 414 50.7
HPP92_020130 Vanilla planifolia HOM05D004380 ORTHO05D005134 1.8e-56 224.6 167 70.1
Pp3c3_10050 Physcomitrium patens HOM05D004380 ORTHO05D005134 1.9e-55 221.1 583 37.7
CARHR062710 Cardamine hirsuta HOM05D004380 ORTHO05D005134 3.3e-55 220.3 178 66.3
SMO118G0163 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 2.4e-53 214.2 216 54.2
CBR_g26347 Chara braunii HOM05D004380 ORTHO05D005134 5.3e-53 213.0 226 53.1
DCAR_007574 Daucus carota HOM05D004380 ORTHO05D005134 3.4e-52 210.3 148 68.9
CSS0014122 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 4.6e-49 199.9 374 46.8
CSS0026269 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 4.6e-49 199.9 374 46.8
TPR.G20578 Trifolium pratense HOM05D004380 ORTHO05D005134 7.9e-49 199.1 112 83.9
Potri.001G147100 Populus trichocarpa HOM05D004380 ORTHO05D005134 7.4e-47 192.6 443 38.4
arahy.Tifrunner.gnm1.ann1.MH0ZUI Arachis hypogaea HOM05D004380 ORTHO05D005134 4.8e-46 189.9 159 63.5
Ca_23634_v3 Cicer arietinum L. HOM05D000346 ORTHO05D000326 8.2e-46 189.1 345 51.0
arahy.Tifrunner.gnm1.ann1.45D7QY Arachis hypogaea HOM05D004380 ORTHO05D005134 9.1e-45 185.7 159 66.7
Haze_13061 Corylus avellana HOM05D000001 ORTHO05D010365 1.3e-43 181.8 155 74.8
Cre01.g003487 Chlamydomonas reinhardtii HOM05D004380 ORTHO05D005134 2.5e-34 151.0 196 47.4
CSS0001415 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 1.6e-33 148.3 86 79.1
CSS0037993 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 1.6e-33 148.3 86 79.1
MCO15G532 Micromonas commoda HOM05D004380 ORTHO05D005134 3.3e-31 140.6 260 41.9
Hund11272 Selenicereus undatus HOM05D004380 ORTHO05D005134 1.6e-28 131.7 150 62.7
TPR.G22617 Trifolium pratense HOM05D004380 ORTHO05D005134 5.9e-28 129.8 216 53.2
Lsat_1_v5_gn_3_2421 Lactuca sativa HOM05D004380 ORTHO05D005134 8.5e-27 125.9 141 61.0
CAN.G1186.1 Capsicum annuum HOM05D004380 ORTHO05D005134 1.5e-26 125.2 142 55.6
PRCOL_00005638 Prasinoderma coloniale HOM05D004380 ORTHO05D005134 5.5e-26 123.2 214 38.8
SHI10270 Sapria himalayana HOM05D004380 ORTHO05D005134 2.7e-25 120.9 174 53.4
TPR.G11131 Trifolium pratense HOM05D004380 ORTHO05D005134 1.7e-22 111.7 241 47.3
Sp5g21510 Schrenkiella parvula HOM05D004380 ORTHO05D005134 1.4e-21 108.6 151 43.7
Zm00001eb400590 Zea mays HOM05D004380 ORTHO05D005134 1.0e-19 102.4 156 45.5
Dinv40656 Davidia involucrata HOM05D000301 ORTHO05D000303 2.9e-19 100.9 57 75.4
COL.COLO4_33038 Corchorus olitorius HOM05D004380 ORTHO05D005134 1.0e-16 92.4 100 57.0
Lj2C247T7 Lonicera japonica HOM05D004380 ORTHO05D005134 8.8e-16 89.4 78 67.9
HPP92_020129 Vanilla planifolia HOM05D004380 ORTHO05D005134 5.7e-15 86.7 124 42.7
Medtr8g446970 Medicago truncatula HOM05D004380 ORTHO05D005134 1.3e-14 85.5 275 35.3
AL3G52660 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 3.1e-13 80.9 66 57.6
TPR.G17657 Trifolium pratense HOM05D004380 ORTHO05D005134 3.8e-11 73.9 109 48.6
Cfa026589 Carpinus fangiana HOM05D004380 ORTHO05D005134 1.1e-10 72.4 137 35.0
C05p31200 Brassica napus HOM05D004380 ORTHO05D005134 1.4e-08 65.5 64 54.7
arahy.Tifrunner.gnm1.ann1.FR68MS Arachis hypogaea HOM05D005435 ORTHO05D005134 9.8e-07 59.3 70 61.4
Medtr4g081620 Medicago truncatula HOM05D004380 ORTHO05D005134 9.8e-07 59.3 86 50.0


User provided reference genes

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