Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 1.4e-137 493.0 268 100.0
Cfa006713 Carpinus fangiana HOM05D006608 ORTHO05D008316 2.6e-115 419.1 256 83.6
CiPaw.08G154200 Carya illinoinensis HOM05D006608 ORTHO05D008316 5.4e-113 411.4 264 80.7
Haze_04048 Corylus avellana HOM05D006608 ORTHO05D008316 1.3e-111 406.8 288 75.0
Thecc.05G325800 Theobroma cacao HOM05D006608 ORTHO05D008316 1.2e-109 400.2 241 83.8
Duzib177G0608 Durio zibethinus HOM05D006608 ORTHO05D008316 2.6e-107 392.5 250 81.2
GSVIVG01031268001 Vitis vinifera HOM05D006608 ORTHO05D008316 4.4e-107 391.7 244 81.1
COL.COLO4_05523 Corchorus olitorius HOM05D006608 ORTHO05D008316 1.3e-106 390.2 222 86.9
Gorai.013G208300 Gossypium raimondii HOM05D006608 ORTHO05D008316 1.9e-105 386.3 244 79.9
CSS0011542 Camellia sinensis var. sinensis HOM05D006608 ORTHO05D008316 2.4e-105 386.0 226 85.4
Potri.005G010700 Populus trichocarpa HOM05D006608 ORTHO05D008316 7.1e-105 384.4 227 84.1
Gohir.A13G176500 Gossypium hirsutum HOM05D006608 ORTHO05D008316 1.2e-104 383.6 244 79.5
Manes.08G109600 Manihot esculenta HOM05D006608 ORTHO05D008316 2.7e-104 382.5 245 79.2
Potri.013G006500 Populus trichocarpa HOM05D006608 ORTHO05D008316 4.6e-104 381.7 225 84.0
Sabra05G0007800 Salix brachista HOM05D006608 ORTHO05D008316 1.0e-103 380.6 227 82.4
Sabra05G0019000 Salix brachista HOM05D006608 ORTHO05D008316 3.9e-103 378.6 227 81.9
Ciclev10002108m.g Citrus clementina HOM05D006608 ORTHO05D008316 1.5e-102 376.7 219 84.9
CANSAT54G1874 Cannabis sativa HOM05D006608 ORTHO05D008316 2.5e-102 375.9 216 86.6
Sabra13G0005500 Salix brachista HOM05D006608 ORTHO05D008316 2.1e-101 372.9 238 79.0
TWI12G0784 Tripterygium wilfordii HOM05D006608 ORTHO05D008316 2.1e-101 372.9 240 79.6
Eucgr.H01287 Eucalyptus grandis HOM05D006608 ORTHO05D008316 8.1e-101 370.9 216 83.8
Actinidia35508 Actinidia chinensis HOM05D006608 ORTHO05D008316 1.4e-100 370.2 228 79.8
Prupe.6G309700 Prunus persica HOM05D006608 ORTHO05D008316 1.8e-100 369.8 217 84.3
MD04G1191200 Malus domestica HOM05D006608 ORTHO05D008316 7.6e-99 364.4 217 82.5
TAR362G0553 Trochodendron aralioides HOM05D006608 ORTHO05D008316 7.6e-99 364.4 223 82.1
Cc02_g35130 Coffea canephora HOM05D006608 ORTHO05D008316 9.9e-99 364.0 228 78.5
vmacro01585 Vaccinium macrocarpon HOM05D006608 ORTHO05D008316 1.7e-98 363.2 225 79.6
THA.LOC104820562 Tarenaya hassleriana HOM05D006608 ORTHO05D008316 4.9e-98 361.7 226 81.0
MD12G1203800 Malus domestica HOM05D006608 ORTHO05D008316 6.4e-98 361.3 217 81.6
PGR031G0497 Punica granatum HOM05D006608 ORTHO05D008316 8.4e-98 360.9 253 75.5
MBI18_g27388_MAGBIO Magnolia biondii HOM05D006608 ORTHO05D008316 1.4e-97 360.1 240 77.1
HanXRQChr09g0247441 Helianthus annuus HOM05D006608 ORTHO05D008316 2.4e-97 359.4 226 79.6
Dinv30914 Davidia involucrata HOM05D006608 ORTHO05D008316 3.2e-97 359.0 205 86.3
Lj2g0018741 Lotus japonicus HOM05D006608 ORTHO05D008316 4.2e-97 358.6 217 82.5
Ah.04g158480 Amaranthus hybridus HOM05D006608 ORTHO05D008316 7.1e-97 357.8 230 77.0
Gohir.D13G182950 Gossypium hirsutum HOM05D006608 ORTHO05D008316 9.2e-97 357.5 244 75.4
Sed0000881 Sechium edule HOM05D006608 ORTHO05D008316 9.2e-97 357.5 234 77.4
ECA240G1520 Erigeron canadensis HOM05D006608 ORTHO05D008316 1.2e-96 357.1 234 76.5
Glyma.03G230300 Glycine max HOM05D006608 ORTHO05D008316 1.6e-96 356.7 242 76.4
CsaV3_1G015710 Cucumis sativus L. HOM05D006608 ORTHO05D008316 2.7e-96 355.9 234 77.4
ClCG01G010870 Citrullus lanatus HOM05D006608 ORTHO05D008316 6.0e-96 354.8 241 75.5
Lalb_Chr04g0260371 Lupinus albus HOM05D006608 ORTHO05D008316 6.0e-96 354.8 227 78.9
Hund21858 Selenicereus undatus HOM05D006608 ORTHO05D008316 1.3e-95 353.6 241 74.3
FAN02G2060 Fragaria x ananassa HOM05D006608 ORTHO05D008316 1.7e-95 353.2 216 79.2
RcHm_v2.0_Chr3g0457591 Rosa chinensis HOM05D006608 ORTHO05D008316 3.0e-95 352.4 216 79.2
EL10Ac4g09502 Beta vulgaris HOM05D006608 ORTHO05D008316 3.9e-95 352.1 229 76.0
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 6.6e-95 351.3 224 78.1
Rhsim11G0098400 Rhododendron simsii HOM05D006608 ORTHO05D008316 6.6e-95 351.3 268 70.1
Phvul.001G224100 Phaseolus vulgaris HOM05D006608 ORTHO05D008316 8.7e-95 350.9 227 78.0
FAN14G1365 Fragaria x ananassa HOM05D006608 ORTHO05D008316 1.1e-94 350.5 216 78.7
MSTRG.16414 Avicennia marina HOM05D006608 ORTHO05D008316 1.9e-94 349.7 226 76.1
SGA_v2.0_scaffold4G01979 Striga asiatica HOM05D006608 ORTHO05D008316 2.5e-94 349.4 216 79.6
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 4.3e-94 348.6 215 79.1
PSO761G0023 Papaver somniferum HOM05D006608 ORTHO05D008316 4.3e-94 348.6 224 77.7
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 7.3e-94 347.8 234 75.2
FAN05G5720 Fragaria x ananassa HOM05D006608 ORTHO05D008316 9.6e-94 347.4 216 78.7
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 1.2e-93 347.1 219 80.4
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 2.1e-93 346.3 234 74.8
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 2.1e-93 346.3 215 80.5
MELO3C026109.2 Cucumis melo HOM05D006608 ORTHO05D008316 2.1e-93 346.3 205 84.4
Peaxi162Scf00299g00341 Petunia axillaris HOM05D006608 ORTHO05D008316 2.1e-93 346.3 216 79.2
VMungo1383G0735 Vigna mungo HOM05D006608 ORTHO05D008316 2.1e-93 346.3 215 80.5
Lsat_1_v5_gn_7_65241 Lactuca sativa HOM05D006608 ORTHO05D008316 6.2e-93 344.7 222 77.5
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 8.1e-93 344.4 245 72.2
Lj9A306T68 Lonicera japonica HOM05D006608 ORTHO05D008316 8.1e-93 344.4 202 83.2
SalBow5G2350 Salvia bowleyana HOM05D006608 ORTHO05D008316 1.4e-92 343.6 240 73.8
DCAR_002111 Daucus carota HOM05D006608 ORTHO05D008316 1.8e-92 343.2 216 77.3
Migut.B00927 Erythranthe guttata HOM05D006608 ORTHO05D008316 2.4e-92 342.8 242 72.3
AUR62006773 Chenopodium quinoa HOM05D006608 ORTHO05D008316 9.0e-92 340.9 221 75.1
Nitab4.5_0005908g0020 Nicotiana tabacum HOM05D006608 ORTHO05D008316 1.2e-91 340.5 215 79.1
Medtr7g111880 Medicago truncatula HOM05D006608 ORTHO05D008316 1.5e-91 340.1 245 73.1
Aqoxy2G02631 Aquilegia oxysepala HOM05D006608 ORTHO05D008316 5.8e-91 338.2 224 75.4
Psat3g014240 Pisum sativum HOM05D006608 ORTHO05D008316 9.9e-91 337.4 244 70.9
Cpa.g.sc48.186 Carica papaya HOM05D006608 ORTHO05D008316 1.3e-90 337.0 216 78.2
Solyc01g106090.3 Solanum lycopersicum HOM05D006608 ORTHO05D008316 2.2e-90 336.3 215 77.2
CAN.G504.78 Capsicum annuum HOM05D006608 ORTHO05D008316 2.9e-90 335.9 214 77.6
PGSC0003DMG400010682 Solanum tuberosum HOM05D006608 ORTHO05D008316 4.9e-90 335.1 215 76.7
TPR.G1650 Trifolium pratense HOM05D006608 ORTHO05D008316 4.9e-90 335.1 226 74.8
Sopen01g048480 Solanum pennellii HOM05D006608 ORTHO05D008316 6.4e-90 334.7 215 76.7
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 1.4e-89 333.6 245 71.0
FvH4_6g07900 Fragaria vesca HOM05D006608 ORTHO05D008316 5.4e-89 331.6 205 78.0
Nitab4.5_0002750g0060 Nicotiana tabacum HOM05D006608 ORTHO05D008316 7.1e-89 331.3 215 76.3
CDE01G0267 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 2.1e-88 329.7 211 75.4
C01p27450 Brassica napus HOM05D006608 ORTHO05D008316 2.7e-88 329.3 203 80.3
BcaC09g50245 Brassica carinata HOM05D006608 ORTHO05D008316 1.7e-87 326.6 220 75.5
BolC1t02685H Brassica oleracea HOM05D006608 ORTHO05D008316 5.1e-87 325.1 220 75.0
A01p22060 Brassica napus HOM05D006608 ORTHO05D008316 1.5e-86 323.6 218 75.2
ATR0706G264 Amborella trichopoda HOM05D006608 ORTHO05D008316 3.3e-86 322.4 187 83.4
A08p11770 Brassica napus HOM05D006608 ORTHO05D008316 3.3e-86 322.4 251 68.9
BolC8t48283H Brassica oleracea HOM05D006608 ORTHO05D008316 3.3e-86 322.4 217 75.6
BraA08t33169Z Brassica rapa HOM05D006608 ORTHO05D008316 3.3e-86 322.4 251 68.9
CDE12G0684 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 5.6e-86 321.6 207 74.4
Thhalv10025982m.g Eutrema salsugineum HOM05D006608 ORTHO05D008316 1.6e-85 320.1 217 74.7
BcaC07g37888 Brassica carinata HOM05D006608 ORTHO05D008316 8.1e-85 317.8 240 69.6
Sp7g13760 Schrenkiella parvula HOM05D006608 ORTHO05D008316 8.1e-85 317.8 219 74.4
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 2.4e-84 316.2 211 75.4
Aa31LG2G11410 Aethionema arabicum HOM05D006608 ORTHO05D008316 4.0e-84 315.5 217 73.7
AL7G40010 Arabidopsis lyrata HOM05D006608 ORTHO05D008316 6.9e-84 314.7 214 75.2
Os07g0275100 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 1.2e-83 313.9 215 73.5
BcaNung00268 Brassica carinata HOM05D006608 ORTHO05D008316 5.8e-83 311.6 214 75.2
CARHR222300 Cardamine hirsuta HOM05D006608 ORTHO05D008316 9.9e-83 310.8 221 71.5
BcaB04g18298 Brassica carinata HOM05D006608 ORTHO05D008316 1.3e-82 310.5 178 84.3
Carub.0007s2637 Capsella rubella HOM05D006608 ORTHO05D008316 1.7e-82 310.1 225 71.1
AT4G15510 Arabidopsis thaliana HOM05D006608 ORTHO05D008316 3.8e-82 308.9 205 75.1
unitig_0.g2226 Utricularia gibba HOM05D006608 ORTHO05D008316 5.4e-81 305.1 220 68.6
BcaC09g50241 Brassica carinata HOM05D006608 ORTHO05D008316 3.3e-78 295.8 200 74.5
SEGI_38534 Sequoiadendron giganteum HOM05D006608 ORTHO05D008316 6.2e-77 291.6 212 65.6
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 7.9e-72 274.6 186 70.4
Oeu019844.1 Olea europaea HOM05D006608 ORTHO05D008316 7.4e-70 268.1 205 68.3
Pp3c25_7030 Physcomitrium patens HOM05D006608 ORTHO05D008316 2.0e-67 260.0 215 61.4
SMO203G0012 Selaginella moellendorffii HOM05D006608 ORTHO05D008316 3.3e-62 242.7 174 64.4
CBR_g54968 Chara braunii HOM05D006608 ORTHO05D008316 7.2e-57 224.9 180 58.9
Sc09g0002570 Simmondsia chinensis HOM05D006608 ORTHO05D008316 1.5e-51 207.2 132 75.0
Cre08.g362900 Chlamydomonas reinhardtii HOM05D006608 ORTHO05D008316 4.7e-48 195.7 233 46.8
AUR62000427 Chenopodium quinoa HOM05D006608 ORTHO05D008316 6.1e-48 195.3 111 85.6
Os12g0564400 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 2.3e-47 193.4 182 56.0
MCO08G333 Micromonas commoda HOM05D006608 ORTHO05D008316 3.2e-41 172.9 167 50.9
PRCOL_00003409 Prasinoderma coloniale HOM05D006608 ORTHO05D008316 4.2e-25 119.4 194 37.1
Glyma.19G227402 Glycine max HOM05D006608 ORTHO05D008316 7.5e-22 108.6 78 70.5
Os07g0275901 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 2.4e-20 103.6 75 72.0
Os07g0275801 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 3.3e-17 93.2 56 76.8
HPP92_017019 Vanilla planifolia HOM05D002543 ORTHO05D002990 1.4e-12 77.8 161 33.5
TAR633G0622 Trochodendron aralioides HOM05D006608 ORTHO05D008316 1.2e-11 74.7 52 63.5
CSS0020461 Camellia sinensis var. sinensis HOM05D002933 ORTHO05D007742 4.7e-08 62.8 186 28.0
CSS0042513 Camellia sinensis var. sinensis HOM05D002933 ORTHO05D007742 4.7e-08 62.8 186 28.0
Eucgr.L03253 Eucalyptus grandis HOM05D002933 ORTHO05D009221 6.1e-08 62.4 235 25.1
GSVIVG01016616001 Vitis vinifera HOM05D002933 ORTHO05D009221 6.1e-08 62.4 175 26.9
BcaC01g04984 Brassica carinata HOM05D006319 ORTHO05D007963 8.0e-08 62.0 221 27.1
Thhalv10017176m.g Eutrema salsugineum HOM05D006319 ORTHO05D007963 8.0e-08 62.0 145 29.0
BcaB01g03112 Brassica carinata HOM05D006319 ORTHO05D007963 1.4e-07 61.2 154 28.6
BcaC02g08157 Brassica carinata HOM05D006319 ORTHO05D007963 3.1e-07 60.1 146 28.8
A03p26290 Brassica napus HOM05D006319 ORTHO05D007963 3.1e-07 60.1 219 26.5
C03p31420 Brassica napus HOM05D006319 ORTHO05D007963 3.1e-07 60.1 222 26.6
C04p57790 Brassica napus HOM05D006319 ORTHO05D007963 3.1e-07 60.1 146 28.8
BolC4t27297H Brassica oleracea HOM05D006319 ORTHO05D007963 3.1e-07 60.1 146 28.8
BraA03t11843Z Brassica rapa HOM05D006319 ORTHO05D007963 5.2e-07 59.3 219 26.0
Rhsim03G0127300 Rhododendron simsii HOM05D002933 ORTHO05D009221 6.8e-07 58.9 173 26.6
Eucgr.G02907 Eucalyptus grandis HOM05D002933 ORTHO05D009221 1.2e-06 58.2 235 24.3
A04p21670 Brassica napus HOM05D006319 ORTHO05D007963 2.0e-06 57.4 146 28.1
CsaV3_5G026270 Cucumis sativus L. HOM05D002933 ORTHO05D009221 2.0e-06 57.4 225 23.1
MD07G1191200 Malus domestica HOM05D002933 ORTHO05D009221 2.6e-06 57.0 175 24.0
TPR.G13990 Trifolium pratense HOM05D002933 ORTHO05D009221 2.6e-06 57.0 224 22.8
BraA04t17731Z Brassica rapa HOM05D006319 ORTHO05D007963 3.4e-06 56.6 154 27.9
MD01G1121500 Malus domestica HOM05D002933 ORTHO05D009221 3.4e-06 56.6 175 24.0
TAR369G0833 Trochodendron aralioides HOM05D002933 ORTHO05D009221 4.4e-06 56.2 173 24.3
PGR142G1118 Punica granatum HOM05D002933 ORTHO05D009221 5.8e-06 55.8 177 25.4
Aqoxy4G03026 Aquilegia oxysepala HOM05D002933 ORTHO05D009221 7.5e-06 55.5 209 23.0
BolC3t15489H Brassica oleracea HOM05D006319 ORTHO05D007963 7.5e-06 55.5 178 27.5
ECA238G2744 Erigeron canadensis HOM05D002933 ORTHO05D009221 7.5e-06 55.5 174 25.9
Lsat_1_v5_gn_2_115981 Lactuca sativa HOM05D002933 ORTHO05D009221 7.5e-06 55.5 174 25.9
Nn2g10494 Nelumbo nucifera HOM05D002933 ORTHO05D007742 7.5e-06 55.5 80 37.5
Cpa.g.sc1.348 Carica papaya HOM05D002933 ORTHO05D009221 9.8e-06 55.1 175 25.7
SEGI_20505 Sequoiadendron giganteum HOM05D002933 ORTHO05D009221 9.8e-06 55.1 177 25.4


User provided reference genes

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