Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p008473 Quercus lobata HOM05D005528 ORTHO05D007066 2.3e-69 265.4 127 100.0
QL10p003478 Quercus lobata HOM05D005528 ORTHO05D007066 1.0e-13 80.5 43 83.7
QL10p003559 Quercus lobata HOM05D005528 ORTHO05D007066 1.4e-10 70.1 40 75.0
Atru.chr1.2485 Acer truncatum HOM05D000003 ORTHO05D000004 4.1e-10 68.6 34 85.3
MSTRG.7174 Avicennia marina HOM05D005528 ORTHO05D007066 4.1e-10 68.6 40 72.5
Thecc.06G231500 Theobroma cacao HOM05D005528 ORTHO05D007066 4.1e-10 68.6 40 72.5
GSVIVG01007237001 Vitis vinifera HOM05D005528 ORTHO05D007066 4.1e-10 68.6 40 72.5
Ciclev10016375m.g Citrus clementina HOM05D005528 ORTHO05D007066 5.3e-10 68.2 40 70.0
COL.COLO4_31864 Corchorus olitorius HOM05D005528 ORTHO05D007066 5.3e-10 68.2 40 72.5
PGR004G2776 Punica granatum HOM05D005528 ORTHO05D007066 5.3e-10 68.2 40 72.5
SalBow8G0359 Salvia bowleyana HOM05D005528 ORTHO05D007066 5.3e-10 68.2 40 72.5
Gohir.A05G173400 Gossypium hirsutum HOM05D005528 ORTHO05D007066 9.1e-10 67.4 40 70.0
Gohir.D05G176400 Gossypium hirsutum HOM05D005528 ORTHO05D007066 9.1e-10 67.4 40 70.0
Gorai.009G181800 Gossypium raimondii HOM05D005528 ORTHO05D007066 9.1e-10 67.4 40 70.0
QL03p008514 Quercus lobata HOM05D005528 ORTHO05D007066 9.1e-10 67.4 39 74.4
Aqoxy1G04149 Aquilegia oxysepala HOM05D005528 ORTHO05D007066 1.2e-09 67.0 40 70.0
Psat4g003480 Pisum sativum HOM05D005528 ORTHO05D007066 1.2e-09 67.0 40 67.5
ATR0390G001 Amborella trichopoda HOM05D005528 ORTHO05D007066 1.5e-09 66.6 39 69.2
CSS0037266 Camellia sinensis var. sinensis HOM05D005528 ORTHO05D007066 1.5e-09 66.6 40 67.5
Cfa000120 Carpinus fangiana HOM05D005528 ORTHO05D007066 1.5e-09 66.6 40 70.0
Lj4g0026553 Lotus japonicus HOM05D005528 ORTHO05D007066 1.5e-09 66.6 40 67.5
Lj5g0008711 Lotus japonicus HOM05D005528 ORTHO05D007066 1.5e-09 66.6 40 67.5
Lalb_Chr15g0087911 Lupinus albus HOM05D005528 ORTHO05D007066 1.5e-09 66.6 40 70.0
SGA_v2.0_scaffold7G03770 Striga asiatica HOM05D005528 ORTHO05D007066 1.5e-09 66.6 40 67.5
TWI38G1545 Tripterygium wilfordii HOM05D005528 ORTHO05D007066 1.5e-09 66.6 40 70.0
Dinv13958 Davidia involucrata HOM05D005528 ORTHO05D007066 2.0e-09 66.2 40 67.5
Lj1A1238T62 Lonicera japonica HOM05D005528 ORTHO05D007066 2.0e-09 66.2 40 67.5
QL10p003542 Quercus lobata HOM05D005528 ORTHO05D007066 2.0e-09 66.2 40 70.0
Glyma.17G009100 Glycine max HOM05D005528 ORTHO05D007066 2.6e-09 65.9 40 65.0
MD05G1356600 Malus domestica HOM05D005528 ORTHO05D007066 2.6e-09 65.9 40 67.5
RcHm_v2.0_Chr5g0001681 Rosa chinensis HOM05D005528 ORTHO05D007066 2.6e-09 65.9 40 67.5
CANSAT56G1404 Cannabis sativa HOM05D005528 ORTHO05D007066 3.4e-09 65.5 40 67.5
Cpa.g.sc152.65 Carica papaya HOM05D005528 ORTHO05D007066 3.4e-09 65.5 40 67.5
Oeu003172.1 Olea europaea HOM05D005528 ORTHO05D007066 3.4e-09 65.5 40 67.5
Sc17g0007680 Simmondsia chinensis HOM05D005528 ORTHO05D007066 3.4e-09 65.5 40 70.0
vmacro03653 Vaccinium macrocarpon HOM05D005528 ORTHO05D007066 3.4e-09 65.5 40 70.0
Zm00001eb066860 Zea mays HOM05D005528 ORTHO05D007066 3.4e-09 65.5 40 65.0
Cc09_g00990 Coffea canephora HOM05D005528 ORTHO05D007066 4.5e-09 65.1 40 67.5
Nn1g07332 Nelumbo nucifera HOM05D005528 ORTHO05D007066 4.5e-09 65.1 40 65.0
ATR1128G032 Amborella trichopoda HOM05D005528 ORTHO05D007066 5.9e-09 64.7 40 65.0
Ca_21050_v3 Cicer arietinum L. HOM05D005528 ORTHO05D007066 5.9e-09 64.7 40 65.0
Duzib235G0675 Durio zibethinus HOM05D005528 ORTHO05D007066 5.9e-09 64.7 40 65.0
FAN21G0894 Fragaria x ananassa HOM05D005528 ORTHO05D007066 5.9e-09 64.7 40 67.5
FAN25G0965 Fragaria x ananassa HOM05D005528 ORTHO05D007066 5.9e-09 64.7 40 67.5
Manes.16G001400 Manihot esculenta HOM05D005528 ORTHO05D007066 5.9e-09 64.7 40 65.0
Actinidia26871 Actinidia chinensis HOM05D005528 ORTHO05D007066 7.7e-09 64.3 40 65.0
CAN.G1186.18 Capsicum annuum HOM05D005528 ORTHO05D007066 7.7e-09 64.3 40 65.0
CiPaw.10G076700 Carya illinoinensis HOM05D005528 ORTHO05D007066 7.7e-09 64.3 40 67.5
Lsat_1_v5_gn_0_40241 Lactuca sativa HOM05D005528 ORTHO05D007066 7.7e-09 64.3 49 59.2
Sopen11g006860 Solanum pennellii HOM05D005528 ORTHO05D007066 7.7e-09 64.3 40 65.0
PGSC0003DMG400013339 Solanum tuberosum HOM05D005528 ORTHO05D007066 7.7e-09 64.3 40 65.0
ECA248G2494 Erigeron canadensis HOM05D005528 ORTHO05D007066 1.0e-08 63.9 49 59.2
FvH4_3g01110 Fragaria vesca HOM05D005528 ORTHO05D007066 1.0e-08 63.9 40 65.0
Nitab4.5_0000143g0380 Nicotiana tabacum HOM05D005528 ORTHO05D007066 1.0e-08 63.9 40 65.0
Nitab4.5_0001198g0200 Nicotiana tabacum HOM05D005528 ORTHO05D007066 1.0e-08 63.9 40 65.0
Os04g0669500 Oryza sativa ssp. japonica HOM05D005528 ORTHO05D007066 1.0e-08 63.9 40 65.0
arahy.Tifrunner.gnm1.ann1.GWT3TM Arachis hypogaea HOM05D005528 ORTHO05D007066 1.3e-08 63.5 40 62.5
arahy.Tifrunner.gnm1.ann1.T9A2AP Arachis hypogaea HOM05D005528 ORTHO05D007066 1.3e-08 63.5 40 62.5
Medtr4g132890 Medicago truncatula HOM05D005528 ORTHO05D007066 1.3e-08 63.5 40 62.5
Potri.011G023000 Populus trichocarpa HOM05D005528 ORTHO05D007066 1.3e-08 63.5 40 65.0
Sed0027431 Sechium edule HOM05D005528 ORTHO05D007066 1.3e-08 63.5 40 67.5
CsaV3_6G048570 Cucumis sativus L. HOM05D005528 ORTHO05D007066 1.7e-08 63.2 40 65.0
DCAR_030878 Daucus carota HOM05D005528 ORTHO05D007066 1.7e-08 63.2 40 62.5
Eucgr.D01386 Eucalyptus grandis HOM05D005528 ORTHO05D007066 1.7e-08 63.2 40 65.0
PSO675G5657 Papaver somniferum HOM05D005528 ORTHO05D007066 1.7e-08 63.2 40 65.0
Solyc11g012070.3 Solanum lycopersicum HOM05D005528 ORTHO05D007066 1.7e-08 63.2 40 62.5
TPR.G36996 Trifolium pratense HOM05D005528 ORTHO05D007066 1.7e-08 63.2 40 62.5
TAR624G1052 Trochodendron aralioides HOM05D005528 ORTHO05D007066 1.7e-08 63.2 40 65.0
ClCG01G021550 Citrullus lanatus HOM05D005528 ORTHO05D007066 2.2e-08 62.8 40 65.0
Migut.M01382 Erythranthe guttata HOM05D005528 ORTHO05D007066 2.2e-08 62.8 40 65.0
HanXRQChr01g0006671 Helianthus annuus HOM05D005528 ORTHO05D007066 2.2e-08 62.8 40 65.0
Lalb_Chr15g0087921 Lupinus albus HOM05D005528 ORTHO05D007066 2.2e-08 62.8 39 66.7
HPP92_004758 Vanilla planifolia HOM05D005528 ORTHO05D007066 2.2e-08 62.8 40 62.5
EL10Ac8g20170 Beta vulgaris HOM05D005528 ORTHO05D007066 2.9e-08 62.4 40 62.5
AUR62012779 Chenopodium quinoa HOM05D005528 ORTHO05D007066 3.8e-08 62.0 40 62.5
AUR62021877 Chenopodium quinoa HOM05D005528 ORTHO05D007066 3.8e-08 62.0 40 62.5
Ah.09g234310 Amaranthus hybridus HOM05D005528 ORTHO05D007066 5.0e-08 61.6 40 62.5
HanXRQChr01g0006681 Helianthus annuus HOM05D005528 ORTHO05D007066 5.0e-08 61.6 40 62.5
VMungo1215G2369 Vigna mungo HOM05D005528 ORTHO05D007066 5.0e-08 61.6 40 65.0
Oeu049726.1 Olea europaea HOM05D005528 ORTHO05D007066 6.5e-08 61.2 40 65.0
PSO541G4654 Papaver somniferum HOM05D005528 ORTHO05D007066 6.5e-08 61.2 40 62.5
Prupe.4G012400 Prunus persica HOM05D005528 ORTHO05D007066 6.5e-08 61.2 40 62.5
unitig_37.g12163 Utricularia gibba HOM05D005528 ORTHO05D007066 6.5e-08 61.2 40 62.5
CARHR229210 Cardamine hirsuta HOM05D005528 ORTHO05D007066 1.4e-07 60.1 40 65.0
Hund21156 Selenicereus undatus HOM05D005528 ORTHO05D007066 1.4e-07 60.1 40 60.0
SEGI_30686 Sequoiadendron giganteum HOM05D005528 ORTHO05D007066 1.4e-07 60.1 40 57.5
Actinidia02324 Actinidia chinensis HOM05D005528 ORTHO05D007066 1.9e-07 59.7 43 55.8
AL7G31310 Arabidopsis lyrata HOM05D005528 ORTHO05D007066 1.9e-07 59.7 40 65.0
Sabra11G0014000 Salix brachista HOM05D005528 ORTHO05D007066 1.9e-07 59.7 40 60.0
AT4G22305 Arabidopsis thaliana HOM05D005528 ORTHO05D007066 4.2e-07 58.5 40 62.5
THA.LOC104812987 Tarenaya hassleriana HOM05D005528 ORTHO05D007066 4.2e-07 58.5 40 62.5
Aa31LG6G4400 Aethionema arabicum HOM05D005528 ORTHO05D007066 5.5e-07 58.2 40 60.0
A03p53440 Brassica napus HOM05D005528 ORTHO05D007066 9.4e-07 57.4 41 56.1
BraA03t14410Z Brassica rapa HOM05D005528 ORTHO05D007066 9.4e-07 57.4 41 56.1
Thhalv10025978m.g Eutrema salsugineum HOM05D005528 ORTHO05D007066 9.4e-07 57.4 40 60.0
BolC7t45679H Brassica oleracea HOM05D005528 ORTHO05D007066 1.6e-06 56.6 40 57.5
CDE04G2569 Ceratophyllum demersum HOM05D005528 ORTHO05D007066 1.6e-06 56.6 40 57.5
AL7G31320 Arabidopsis lyrata HOM05D005528 ORTHO05D007066 2.1e-06 56.2 40 57.5
AT4G22300 Arabidopsis thaliana HOM05D005528 ORTHO05D007066 2.1e-06 56.2 40 57.5
CARHR229200 Cardamine hirsuta HOM05D005528 ORTHO05D007066 2.1e-06 56.2 40 57.5
Pp3c15_7880 Physcomitrium patens HOM05D005528 ORTHO05D007066 2.1e-06 56.2 34 61.8
BcaNung01697 Brassica carinata HOM05D005528 ORTHO05D007066 2.7e-06 55.8 41 53.7
BcaNung02504 Brassica carinata HOM05D005528 ORTHO05D007066 2.7e-06 55.8 40 57.5
CDE07G1265 Ceratophyllum demersum HOM05D005528 ORTHO05D007066 2.7e-06 55.8 40 57.5
Mapoly0191s0010 Marchantia polymorpha HOM05D005528 ORTHO05D007066 2.7e-06 55.8 39 59.0
Zm00001eb066850 Zea mays HOM05D005528 ORTHO05D007066 2.7e-06 55.8 85 37.6
BcaNung02505 Brassica carinata HOM05D005528 ORTHO05D007066 4.7e-06 55.1 41 53.7
C07p51770 Brassica napus HOM05D005528 ORTHO05D007066 4.7e-06 55.1 41 53.7
Carub.0007s1900 Capsella rubella HOM05D005528 ORTHO05D007066 4.7e-06 55.1 40 57.5
Thhalv10023148m.g Eutrema salsugineum HOM05D005528 ORTHO05D007066 4.7e-06 55.1 40 55.0
Os04g0669600 Oryza sativa ssp. japonica HOM05D005528 ORTHO05D007066 4.7e-06 55.1 40 55.0
Sp7g20420 Schrenkiella parvula HOM05D005528 ORTHO05D007066 4.7e-06 55.1 40 55.0
Rhsim13G0147900 Rhododendron simsii HOM05D005528 ORTHO05D007066 7.9e-06 54.3 27 81.5


User provided reference genes

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