Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 5.0e-190 667.5 321 100.0
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 1.4e-144 516.5 259 96.5
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 1.1e-101 374.0 276 68.1
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 2.5e-96 356.3 275 65.5
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 7.9e-95 351.3 275 64.0
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 2.6e-93 346.3 276 63.8
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 3.7e-92 342.4 275 61.5
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 8.2e-92 341.3 275 61.1
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 4.1e-91 339.0 275 60.7
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 1.2e-90 337.4 276 60.9
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 3.5e-90 335.9 276 61.6
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 1.0e-89 334.3 275 60.0
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 1.0e-89 334.3 275 60.4
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 2.2e-89 333.2 275 62.2
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 2.2e-89 333.2 275 62.2
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 5.0e-89 332.0 275 60.0
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 5.0e-89 332.0 276 61.2
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 6.5e-89 331.6 275 60.4
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 6.5e-89 331.6 275 60.4
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 6.5e-89 331.6 275 58.9
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 6.5e-89 331.6 275 59.6
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 1.4e-88 330.5 275 58.5
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 3.2e-88 329.3 275 59.6
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 4.2e-88 328.9 275 60.4
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 4.2e-88 328.9 276 60.5
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 5.5e-88 328.6 276 62.0
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 7.2e-88 328.2 275 60.0
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 7.2e-88 328.2 275 59.6
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 9.4e-88 327.8 277 59.9
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 9.4e-88 327.8 281 60.9
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 9.4e-88 327.8 281 60.9
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 1.6e-87 327.0 275 59.3
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 2.1e-87 326.6 275 60.0
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 2.7e-87 326.2 277 59.6
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 3.6e-87 325.9 277 59.6
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 3.6e-87 325.9 276 59.8
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 3.6e-87 325.9 275 58.9
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 3.6e-87 325.9 275 58.9
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 3.6e-87 325.9 275 58.9
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 4.7e-87 325.5 275 59.6
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 8.0e-87 324.7 275 60.4
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 8.0e-87 324.7 275 59.6
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 1.4e-86 323.9 275 60.4
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 1.8e-86 323.6 275 59.6
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 1.8e-86 323.6 276 60.1
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 1.8e-86 323.6 275 59.3
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 1.8e-86 323.6 275 58.5
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 1.8e-86 323.6 275 60.0
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 2.3e-86 323.2 274 59.1
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 2.3e-86 323.2 275 57.8
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 2.3e-86 323.2 269 60.2
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 3.9e-86 322.4 275 60.4
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 5.2e-86 322.0 277 58.5
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 5.2e-86 322.0 275 57.1
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 5.2e-86 322.0 275 57.1
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 6.7e-86 321.6 275 58.2
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 8.8e-86 321.2 282 59.2
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 1.1e-85 320.9 276 58.7
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 1.1e-85 320.9 275 58.5
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 1.1e-85 320.9 275 58.5
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 1.5e-85 320.5 275 59.3
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 2.0e-85 320.1 292 56.5
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 2.0e-85 320.1 275 59.6
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 2.6e-85 319.7 275 58.5
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 2.6e-85 319.7 275 58.5
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 3.3e-85 319.3 273 60.1
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 3.3e-85 319.3 276 58.7
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 3.3e-85 319.3 276 56.2
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 4.4e-85 318.9 275 60.7
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 7.4e-85 318.2 274 58.8
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 9.7e-85 317.8 275 59.6
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 1.3e-84 317.4 275 58.2
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 1.3e-84 317.4 275 58.5
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 1.3e-84 317.4 274 58.8
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 1.3e-84 317.4 282 58.9
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 2.2e-84 316.6 275 58.9
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 2.2e-84 316.6 275 58.2
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 2.2e-84 316.6 274 58.8
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 4.8e-84 315.5 269 59.5
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 6.3e-84 315.1 275 58.5
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 6.3e-84 315.1 275 58.2
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 8.2e-84 314.7 275 58.5
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 8.2e-84 314.7 275 58.9
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 1.1e-83 314.3 276 57.6
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 1.1e-83 314.3 275 57.1
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 1.4e-83 313.9 275 56.7
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 1.4e-83 313.9 275 57.5
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 1.8e-83 313.5 295 54.9
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 1.8e-83 313.5 275 57.8
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 4.1e-83 312.4 269 58.0
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 5.3e-83 312.0 275 58.2
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 7.0e-83 311.6 275 57.1
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 9.1e-83 311.2 282 57.1
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 1.2e-82 310.8 275 56.7
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 1.2e-82 310.8 276 57.2
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 2.6e-82 309.7 282 56.7
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 1.7e-81 307.0 275 56.7
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 1.7e-81 307.0 275 56.7
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 2.5e-80 303.1 239 61.1
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 4.2e-80 302.4 280 55.4
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 1.6e-79 300.4 275 54.9
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 2.7e-79 299.7 275 54.9
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 4.7e-79 298.9 275 54.9
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 1.4e-78 297.4 275 54.2
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 2.3e-78 296.6 275 57.1
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 4.0e-78 295.8 276 55.4
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 1.5e-77 293.9 263 57.8
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 2.0e-77 293.5 275 54.5
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 2.0e-77 293.5 275 54.5
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 2.6e-77 293.1 275 56.0
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 2.6e-77 293.1 275 55.3
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 3.4e-77 292.7 272 55.5
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 4.4e-77 292.4 275 54.5
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 7.5e-77 291.6 275 54.9
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 7.5e-77 291.6 275 54.9
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 9.7e-77 291.2 275 55.6
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 1.3e-76 290.8 275 54.2
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 4.8e-76 288.9 239 61.1
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 1.1e-75 287.7 275 54.5
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 1.1e-75 287.7 275 54.2
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 1.8e-75 287.0 280 52.5
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 4.1e-75 285.8 275 54.5
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 1.6e-74 283.9 276 51.8
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 2.7e-74 283.1 275 53.1
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 8.5e-73 278.1 275 53.5
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 8.5e-73 278.1 275 53.5
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 1.2e-71 274.2 318 47.5
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 3.6e-71 272.7 275 52.7
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 3.0e-70 269.6 284 51.1
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 2.4e-59 233.4 274 46.0
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 2.8e-55 219.9 210 54.3
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 4.7e-55 219.2 215 52.6
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 6.0e-50 202.2 240 46.7
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 8.6e-49 198.4 217 49.8
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 2.5e-48 196.8 275 43.3
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 1.2e-47 194.5 247 44.9
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 8.3e-44 181.8 144 60.4
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 1.0e-41 174.9 171 53.8
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 2.1e-39 167.2 125 67.2
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 2.2e-36 157.1 103 71.8
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 1.4e-35 154.5 165 49.7
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 2.7e-26 123.6 108 56.5
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 6.0e-26 122.5 118 55.1
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 4.5e-13 79.7 127 34.6
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 8.1e-07 58.9 80 40.0


User provided reference genes

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