Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p004281 Quercus lobata HOM05D008697 ORTHO05D010866 1.4e-261 905.6 426 100.0
Duzib041G0294 Durio zibethinus HOM05D007494 ORTHO05D009621 5.7e-48 196.1 378 33.9
Potri.005G254500 Populus trichocarpa HOM05D000664 ORTHO05D010866 2.3e-33 147.5 382 29.8
QL02p015450 Quercus lobata HOM05D007494 ORTHO05D009621 9.7e-32 142.1 378 29.6
Potri.005G254633 Populus trichocarpa HOM05D000664 ORTHO05D010866 1.8e-30 137.9 383 29.2
Oeu004534.1 Olea europaea HOM05D008697 ORTHO05D010866 2.4e-22 110.9 388 26.0
Actinidia11171 Actinidia chinensis HOM05D008697 ORTHO05D010866 3.8e-20 103.6 361 26.9
PGSC0003DMG400015282 Solanum tuberosum HOM05D008697 ORTHO05D010866 1.4e-17 95.1 320 27.5
PSO210G4175 Papaver somniferum HOM05D007162 ORTHO05D007631 2.3e-17 94.4 351 25.1
Nitab4.5_0005200g0080 Nicotiana tabacum HOM05D008697 ORTHO05D010866 6.8e-17 92.8 376 26.3
PGSC0003DMG400025634 Solanum tuberosum HOM05D008697 ORTHO05D010866 6.8e-17 92.8 377 25.2
Peaxi162Scf00171g00721 Petunia axillaris HOM05D008697 ORTHO05D010866 3.4e-16 90.5 387 25.8
Nitab4.5_0000430g0080 Nicotiana tabacum HOM05D008697 ORTHO05D010866 9.8e-16 89.0 387 24.3
CAN.G1909.14 Capsicum annuum HOM05D008697 ORTHO05D010866 1.7e-15 88.2 329 26.4
Sopen03g029650 Solanum pennellii HOM05D008697 ORTHO05D010866 5.4e-14 83.2 248 29.0
Sopen03g029630 Solanum pennellii HOM05D008697 ORTHO05D010923 9.1e-14 82.4 279 26.9
ATR0693G387 Amborella trichopoda HOM05D007162 ORTHO05D007631 4.5e-13 80.1 357 23.8
CSS0011530 Camellia sinensis var. sinensis HOM05D000664 ORTHO05D000491 5.9e-13 79.7 382 25.1
PGSC0003DMG400015218 Solanum tuberosum HOM05D008697 ORTHO05D010923 5.9e-13 79.7 291 25.8
CAN.G637.31 Capsicum annuum HOM05D008697 ORTHO05D010866 7.7e-13 79.3 299 25.8
Peaxi162Scf00171g00817 Petunia axillaris HOM05D008697 ORTHO05D010866 1.3e-12 78.6 397 25.2
Sopen03g029100 Solanum pennellii HOM05D008697 ORTHO05D010866 1.7e-12 78.2 267 24.7
Nitab4.5_0003309g0040 Nicotiana tabacum HOM05D008697 ORTHO05D010866 2.9e-12 77.4 385 24.2
Peaxi162Scf00251g00041 Petunia axillaris HOM05D008697 ORTHO05D010866 3.8e-12 77.0 305 25.6
CAN.G637.32 Capsicum annuum HOM05D008697 ORTHO05D010866 8.5e-12 75.9 319 26.0
vmacro20419 Vaccinium macrocarpon HOM05D002420 ORTHO05D002422 8.5e-12 75.9 287 22.0
Peaxi162Scf00332g10026 Petunia axillaris HOM05D000664 ORTHO05D000491 1.5e-11 75.1 284 27.1
CAN.G1631.9 Capsicum annuum HOM05D008697 ORTHO05D010866 1.9e-11 74.7 296 24.7
THA.LOC104813247 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 1.9e-11 74.7 376 22.1
Peaxi162Scf00001g00056 Petunia axillaris HOM05D008697 ORTHO05D010866 2.5e-11 74.3 305 25.2
Lj3P834T54 Lonicera japonica HOM05D007162 ORTHO05D007631 3.2e-11 73.9 364 21.7
QL02p015444 Quercus lobata HOM05D007494 ORTHO05D009621 3.2e-11 73.9 149 29.5
CSS0008769 Camellia sinensis var. sinensis HOM05D000664 ORTHO05D000491 4.2e-11 73.6 377 24.1
CAN.G1631.2 Capsicum annuum HOM05D008697 ORTHO05D010866 4.2e-11 73.6 378 22.2
QL12p021856 Quercus lobata HOM05D000007 ORTHO05D000039 9.4e-11 72.4 302 26.2
Thhalv10015953m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 3.6e-10 70.5 267 22.8
AT1G20795 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 4.7e-10 70.1 370 22.4
Cfa020730 Carpinus fangiana HOM05D000664 ORTHO05D000491 4.7e-10 70.1 277 24.9
SalBow8G4721 Salvia bowleyana HOM05D007162 ORTHO05D007631 4.7e-10 70.1 347 22.8
Glyma.07G187200 Glycine max HOM05D000007 ORTHO05D000017 6.1e-10 69.7 250 26.8
PGSC0003DMG400017884 Solanum tuberosum HOM05D008697 ORTHO05D010866 6.1e-10 69.7 385 23.1
Thecc.03G149500 Theobroma cacao HOM05D000664 ORTHO05D000491 6.1e-10 69.7 273 23.1
Nn3g18583 Nelumbo nucifera HOM05D000664 ORTHO05D000491 8.0e-10 69.3 294 25.9
Sp1g18490 Schrenkiella parvula HOM05D007494 ORTHO05D009621 8.0e-10 69.3 274 23.0
Haze_19047 Corylus avellana HOM05D000664 ORTHO05D000491 1.0e-09 68.9 280 25.0
Eucgr.H02731 Eucalyptus grandis HOM05D000007 ORTHO05D000017 1.0e-09 68.9 279 25.8
Peaxi162Scf00171g00630 Petunia axillaris HOM05D008697 ORTHO05D010866 1.0e-09 68.9 308 24.7
Hund15878 Selenicereus undatus HOM05D001729 ORTHO05D001155 1.0e-09 68.9 313 24.0
AUR62032769 Chenopodium quinoa HOM05D007162 ORTHO05D007631 1.4e-09 68.6 361 21.1
FvH4_4g20690 Fragaria vesca HOM05D007162 ORTHO05D007631 1.4e-09 68.6 353 20.4
FAN07G2689 Fragaria x ananassa HOM05D007162 ORTHO05D007631 1.4e-09 68.6 353 20.1
Lsat_1_v5_gn_1_40801 Lactuca sativa HOM05D007162 ORTHO05D007631 1.4e-09 68.6 346 21.1
Aqoxy5G01770 Aquilegia oxysepala HOM05D000664 ORTHO05D009863 1.8e-09 68.2 240 25.4
Eucgr.H02715 Eucalyptus grandis HOM05D000007 ORTHO05D000017 1.8e-09 68.2 281 26.0
SGA_v2.0_scaffold157G37347 Striga asiatica HOM05D007162 ORTHO05D007631 1.8e-09 68.2 303 23.4
Thecc.08G063600 Theobroma cacao HOM05D007494 ORTHO05D009621 1.8e-09 68.2 123 30.9
Rhsim03G0248900 Rhododendron simsii HOM05D000664 ORTHO05D000491 3.0e-09 67.4 264 22.3
PGSC0003DMG400025633 Solanum tuberosum HOM05D008697 ORTHO05D010866 5.2e-09 66.6 302 22.8
THA.LOC104801597 Tarenaya hassleriana HOM05D000664 ORTHO05D000491 5.2e-09 66.6 264 25.4
Aqoxy6G00425 Aquilegia oxysepala HOM05D000664 ORTHO05D010440 6.8e-09 66.2 337 24.3
PSO384G3342 Papaver somniferum HOM05D000007 ORTHO05D000017 8.8e-09 65.9 244 24.6
PGR083G2034 Punica granatum HOM05D000007 ORTHO05D000017 8.8e-09 65.9 370 23.5
RcHm_v2.0_Chr4g0426111 Rosa chinensis HOM05D007162 ORTHO05D007631 8.8e-09 65.9 356 20.2
Sc01g0001610 Simmondsia chinensis HOM05D000664 ORTHO05D000491 1.2e-08 65.5 283 24.7
AUR62016246 Chenopodium quinoa HOM05D007162 ORTHO05D007631 1.5e-08 65.1 365 21.6
PSO339G1745 Papaver somniferum HOM05D000007 ORTHO05D000017 1.5e-08 65.1 241 23.7
Rhsim10G0188800 Rhododendron simsii HOM05D002420 ORTHO05D002422 1.5e-08 65.1 294 22.4
Ciclev10012020m.g Citrus clementina HOM05D000007 ORTHO05D000017 2.0e-08 64.7 224 27.2
ECA238G0967 Erigeron canadensis HOM05D000007 ORTHO05D003666 2.0e-08 64.7 239 27.2
Lalb_Chr20g0120651 Lupinus albus HOM05D007162 ORTHO05D007631 2.0e-08 64.7 352 22.2
Oeu046586.1 Olea europaea HOM05D007162 ORTHO05D007631 2.0e-08 64.7 354 21.2
PSO832G0873 Papaver somniferum HOM05D000007 ORTHO05D000676 2.0e-08 64.7 264 26.5
BolC8t50169H Brassica oleracea HOM05D007494 ORTHO05D009621 2.6e-08 64.3 220 27.7
Rhsim04G0064500 Rhododendron simsii HOM05D000664 ORTHO05D000491 2.6e-08 64.3 226 25.7
Aqoxy2G02919 Aquilegia oxysepala HOM05D007162 ORTHO05D007631 3.4e-08 63.9 364 24.7
CAN.G1631.3 Capsicum annuum HOM05D008697 ORTHO05D010866 3.4e-08 63.9 290 21.4
MBI19_g26733_MAGBIO Magnolia biondii HOM05D000007 ORTHO05D007252 3.4e-08 63.9 297 24.9
VMungo0540G1379 Vigna mungo HOM05D007162 ORTHO05D007631 3.4e-08 63.9 358 22.6
Phvul.006G120400 Phaseolus vulgaris HOM05D007162 ORTHO05D007631 4.4e-08 63.5 358 22.6
QL12p021811 Quercus lobata HOM05D000007 ORTHO05D000039 4.4e-08 63.5 234 30.3
SGA_v2.0_scaffold69G23275 Striga asiatica HOM05D000664 ORTHO05D000491 4.4e-08 63.5 301 25.6
CAN.G407.34 Capsicum annuum HOM05D000664 ORTHO05D000491 5.7e-08 63.2 318 24.5
AT1G20240 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 7.5e-08 62.8 286 24.8
CiPaw.01G207700 Carya illinoinensis HOM05D000664 ORTHO05D000491 7.5e-08 62.8 224 25.9
Manes.06G131800 Manihot esculenta HOM05D000664 ORTHO05D000491 7.5e-08 62.8 278 25.2
PGSC0003DMG400015217 Solanum tuberosum HOM05D008697 ORTHO05D010866 7.5e-08 62.8 189 24.9
COL.COLO4_38550 Corchorus olitorius HOM05D000664 ORTHO05D000491 9.8e-08 62.4 232 24.6
DCAR_015714 Daucus carota HOM05D033045 ORTHO05D045062 9.8e-08 62.4 289 21.8
Duzib177G0141 Durio zibethinus HOM05D000664 ORTHO05D000491 9.8e-08 62.4 296 25.0
Gorai.008G214400 Gossypium raimondii HOM05D000664 ORTHO05D000491 9.8e-08 62.4 274 24.5
Dinv38186 Davidia involucrata HOM05D000007 ORTHO05D000017 1.3e-07 62.0 360 23.3
FvH4_6g52610 Fragaria vesca HOM05D000664 ORTHO05D000491 1.3e-07 62.0 252 24.2
FAN03G2025 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.3e-07 62.0 333 22.5
Thhalv10011090m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 1.7e-07 61.6 306 22.5
FvH4_6g53001 Fragaria vesca HOM05D000664 ORTHO05D000491 1.7e-07 61.6 260 25.0
Manes.01G166900 Manihot esculenta HOM05D000664 ORTHO05D000491 1.7e-07 61.6 319 24.5
Medtr7g070440 Medicago truncatula HOM05D000007 ORTHO05D000017 1.7e-07 61.6 233 24.9
Gohir.D12G199200 Gossypium hirsutum HOM05D000664 ORTHO05D000491 2.2e-07 61.2 274 24.5
PGR044G0383 Punica granatum HOM05D000664 ORTHO05D000491 2.2e-07 61.2 279 25.4
Solyc12g098170.1 Solanum lycopersicum HOM05D000007 ORTHO05D000017 2.2e-07 61.2 286 25.2
TAR371G0451 Trochodendron aralioides HOM05D000007 ORTHO05D007252 2.2e-07 61.2 319 23.5
Eucgr.B03982 Eucalyptus grandis HOM05D007162 ORTHO05D007631 2.8e-07 60.8 356 21.6
FvH4_7g09840 Fragaria vesca HOM05D000007 ORTHO05D000017 2.8e-07 60.8 343 22.4
Potri.001G318400 Populus trichocarpa HOM05D000007 ORTHO05D000017 2.8e-07 60.8 234 26.5
FAN17G0186 Fragaria x ananassa HOM05D000664 ORTHO05D000491 3.7e-07 60.5 296 22.6
FAN24G2236 Fragaria x ananassa HOM05D001729 ORTHO05D001155 3.7e-07 60.5 248 25.8
QL11p009377 Quercus lobata HOM05D000007 ORTHO05D000017 3.7e-07 60.5 227 26.0
Thecc.09G282200 Theobroma cacao HOM05D002420 ORTHO05D002422 3.7e-07 60.5 299 22.1
AL1G33790 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 4.9e-07 60.1 266 23.7
Cc01_g02550 Coffea canephora HOM05D000664 ORTHO05D000491 4.9e-07 60.1 232 26.7
ECA232G2420 Erigeron canadensis HOM05D000664 ORTHO05D000491 4.9e-07 60.1 280 23.2
TAR371G0827 Trochodendron aralioides HOM05D002420 ORTHO05D002422 4.9e-07 60.1 292 22.6
Aqoxy3G00738 Aquilegia oxysepala HOM05D002420 ORTHO05D002422 6.3e-07 59.7 289 23.2
COL.COLO4_09297 Corchorus olitorius HOM05D000007 ORTHO05D000017 6.3e-07 59.7 248 23.4
Dinv29578 Davidia involucrata HOM05D000007 ORTHO05D005385 6.3e-07 59.7 223 23.3
FvH4_6g39910 Fragaria vesca HOM05D000007 ORTHO05D000017 6.3e-07 59.7 337 23.4
FAN07G0903 Fragaria x ananassa HOM05D000664 ORTHO05D000491 6.3e-07 59.7 271 22.9
Glyma.06G197000 Glycine max HOM05D000007 ORTHO05D000017 6.3e-07 59.7 259 25.5
arahy.Tifrunner.gnm1.ann1.JH40ZX Arachis hypogaea HOM05D000007 ORTHO05D000017 8.3e-07 59.3 259 25.5
Ciclev10015458m.g Citrus clementina HOM05D000007 ORTHO05D000521 8.3e-07 59.3 225 24.4
Migut.F01254 Erythranthe guttata HOM05D000664 ORTHO05D000491 8.3e-07 59.3 233 27.0
Migut.N00720 Erythranthe guttata HOM05D000007 ORTHO05D000017 8.3e-07 59.3 236 27.1
PSO339G0434 Papaver somniferum HOM05D000007 ORTHO05D000017 8.3e-07 59.3 245 24.5
PSO339G2125 Papaver somniferum HOM05D000007 ORTHO05D000017 8.3e-07 59.3 248 24.6
PSO339G4245 Papaver somniferum HOM05D000007 ORTHO05D000017 8.3e-07 59.3 248 24.6
Rhsim03G0248800 Rhododendron simsii HOM05D000664 ORTHO05D000491 8.3e-07 59.3 241 24.1
Cfa003137 Carpinus fangiana HOM05D000007 ORTHO05D000017 1.1e-06 58.9 244 25.8
Duzib138G0537 Durio zibethinus HOM05D000007 ORTHO05D000521 1.1e-06 58.9 192 28.1
PSO832G2648 Papaver somniferum HOM05D000007 ORTHO05D000017 1.1e-06 58.9 269 23.8
Thecc.06G054800 Theobroma cacao HOM05D000664 ORTHO05D000491 1.1e-06 58.9 252 26.2
FAN06G4529 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.4e-06 58.5 302 22.2
PSO832G1314 Papaver somniferum HOM05D000007 ORTHO05D000676 1.4e-06 58.5 240 24.6
Prupe.1G112700 Prunus persica HOM05D007162 ORTHO05D007631 1.4e-06 58.5 339 21.5
Sc23g0006800 Simmondsia chinensis HOM05D000664 ORTHO05D000491 1.4e-06 58.5 240 25.4
SGA_v2.0_scaffold110G31296 Striga asiatica HOM05D000007 ORTHO05D000017 1.4e-06 58.5 200 25.5
CANSAT01G0107 Cannabis sativa HOM05D002420 ORTHO05D002422 1.8e-06 58.2 344 21.8
AUR62039090 Chenopodium quinoa HOM05D000007 ORTHO05D000017 1.8e-06 58.2 233 25.8
Lju41C12T10 Lonicera japonica HOM05D000007 ORTHO05D000039 1.8e-06 58.2 258 26.0
LjContig00310g0023061 Lotus japonicus HOM05D000007 ORTHO05D000017 1.8e-06 58.2 245 23.7
Lalb_Chr18g0058531 Lupinus albus HOM05D007162 ORTHO05D007631 1.8e-06 58.2 359 22.6
Duzib268G0143 Durio zibethinus HOM05D000007 ORTHO05D000017 2.4e-06 57.8 253 24.9
Migut.N00719 Erythranthe guttata HOM05D000007 ORTHO05D000017 2.4e-06 57.8 229 21.8
MD17G1124300 Malus domestica HOM05D000007 ORTHO05D000017 2.4e-06 57.8 227 22.9
PGR083G1858 Punica granatum HOM05D000007 ORTHO05D000017 2.4e-06 57.8 239 28.5
vmacro19993 Vaccinium macrocarpon HOM05D000007 ORTHO05D000017 2.4e-06 57.8 259 23.6
Ca_00957_v3 Cicer arietinum L. HOM05D007162 ORTHO05D007631 3.1e-06 57.4 359 21.4
MD13G1178100 Malus domestica HOM05D000007 ORTHO05D000521 3.1e-06 57.4 344 21.5
PGR031G2441 Punica granatum HOM05D007162 ORTHO05D007631 3.1e-06 57.4 345 19.4
Thecc.06G054900 Theobroma cacao HOM05D000664 ORTHO05D000491 3.1e-06 57.4 241 28.6
TPR.G5959 Trifolium pratense HOM05D002420 ORTHO05D002422 3.1e-06 57.4 291 21.6
arahy.Tifrunner.gnm1.ann1.IXSG1G Arachis hypogaea HOM05D000007 ORTHO05D000017 4.1e-06 57.0 264 23.5
FAN07G1646 Fragaria x ananassa HOM05D000007 ORTHO05D000521 4.1e-06 57.0 291 24.1
PSO675G0284 Papaver somniferum HOM05D000007 ORTHO05D000017 4.1e-06 57.0 320 23.8
PSO712G0001 Papaver somniferum HOM05D000007 ORTHO05D000017 4.1e-06 57.0 320 23.8
DCAR_012559 Daucus carota HOM05D000007 ORTHO05D000039 5.4e-06 56.6 295 22.0
Glyma.17G162200 Glycine max HOM05D000007 ORTHO05D000017 5.4e-06 56.6 248 24.6
Lalb_Chr16g0386521 Lupinus albus HOM05D002420 ORTHO05D002422 5.4e-06 56.6 305 20.0
RcHm_v2.0_Chr4g0398061 Rosa chinensis HOM05D000664 ORTHO05D000491 5.4e-06 56.6 245 23.3
TPR.G17061 Trifolium pratense HOM05D000007 ORTHO05D000017 5.4e-06 56.6 126 31.7
TAR626G0319 Trochodendron aralioides HOM05D000007 ORTHO05D000017 5.4e-06 56.6 230 23.9
Aqoxy6G00426 Aquilegia oxysepala HOM05D000664 ORTHO05D010440 7.0e-06 56.2 241 27.8
Ciclev10006809m.g Citrus clementina HOM05D000007 ORTHO05D000017 7.0e-06 56.2 238 24.4
Medtr3g006570 Medicago truncatula HOM05D000007 ORTHO05D000017 7.0e-06 56.2 206 28.6
PSO339G0424 Papaver somniferum HOM05D000007 ORTHO05D000017 7.0e-06 56.2 236 26.3
PSO339G0468 Papaver somniferum HOM05D000007 ORTHO05D000017 7.0e-06 56.2 236 26.3
TPR.G31270 Trifolium pratense HOM05D000007 ORTHO05D000017 7.0e-06 56.2 232 25.0
unitig_899.g14987 Utricularia gibba HOM05D002420 ORTHO05D002422 7.0e-06 56.2 292 22.9
Ciclev10017792m.g Citrus clementina HOM05D000007 ORTHO05D000017 9.1e-06 55.8 305 22.0
FvH4_4g13100 Fragaria vesca HOM05D000007 ORTHO05D000521 9.1e-06 55.8 292 24.3
FAN06G4396 Fragaria x ananassa HOM05D000007 ORTHO05D000017 9.1e-06 55.8 240 24.2
FAN12G3766 Fragaria x ananassa HOM05D000234 ORTHO05D001258 9.1e-06 55.8 292 24.3
FAN22G1400 Fragaria x ananassa HOM05D000664 ORTHO05D000491 9.1e-06 55.8 277 22.4
Lj3P913T22 Lonicera japonica HOM05D000007 ORTHO05D000017 9.1e-06 55.8 293 24.9
Os05g0177000 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 9.1e-06 55.8 139 35.3


User provided reference genes

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