Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 3.9e-240 834.3 408 100.0
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 2.8e-230 801.6 408 95.3
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 2.0e-228 795.4 408 93.9
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 7.7e-228 793.5 407 94.6
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 1.3e-227 792.7 408 93.6
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 6.5e-227 790.4 407 94.1
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 1.0e-224 783.1 408 92.6
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 5.7e-223 777.3 406 92.1
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 9.7e-223 776.5 408 91.2
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 1.7e-222 775.8 408 90.9
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 2.2e-222 775.4 407 91.6
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 3.7e-222 774.6 407 91.4
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 6.3e-222 773.9 408 91.2
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 1.4e-221 772.7 406 92.1
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 1.8e-221 772.3 408 91.2
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 1.8e-221 772.3 408 91.7
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 2.4e-221 771.9 408 91.7
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 2.4e-221 771.9 407 91.2
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 4.1e-221 771.2 407 91.2
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 5.3e-221 770.8 407 91.4
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 5.3e-221 770.8 407 91.4
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 1.2e-220 769.6 407 90.9
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 1.6e-220 769.2 408 90.7
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 2.0e-220 768.8 408 90.7
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 2.6e-220 768.5 408 90.7
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 2.6e-220 768.5 408 90.9
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 2.6e-220 768.5 407 91.4
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 4.5e-220 767.7 406 90.1
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 2.2e-219 765.4 407 90.7
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 2.9e-219 765.0 406 90.6
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 6.5e-219 763.8 407 90.7
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 8.5e-219 763.5 407 90.4
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 1.9e-218 762.3 408 89.7
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 1.9e-218 762.3 408 89.5
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.9e-218 762.3 408 90.7
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 1.9e-218 762.3 408 90.0
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 3.2e-218 761.5 408 89.0
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 3.2e-218 761.5 407 89.7
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 4.2e-218 761.1 408 90.0
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 5.5e-218 760.8 408 90.2
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 5.5e-218 760.8 407 89.4
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 7.2e-218 760.4 408 90.0
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 9.4e-218 760.0 408 89.7
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 1.2e-217 759.6 407 90.4
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 1.6e-217 759.2 407 89.2
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 1.6e-217 759.2 408 88.7
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 2.7e-217 758.4 408 89.5
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 2.7e-217 758.4 408 90.0
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 3.6e-217 758.1 407 88.9
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 3.6e-217 758.1 422 87.2
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 4.7e-217 757.7 409 89.5
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 4.7e-217 757.7 408 89.7
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 8.0e-217 756.9 408 89.0
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 1.0e-216 756.5 407 88.2
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 1.0e-216 756.5 407 89.9
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 1.4e-216 756.1 408 90.0
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 2.3e-216 755.4 450 83.8
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 2.3e-216 755.4 407 88.5
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 3.0e-216 755.0 408 87.7
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 6.7e-216 753.8 407 88.5
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 1.2e-215 753.1 451 82.5
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 1.5e-215 752.7 407 89.7
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 2.0e-215 752.3 407 88.2
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 3.3e-215 751.5 407 88.5
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 3.3e-215 751.5 408 88.0
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 3.3e-215 751.5 406 88.9
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 4.4e-215 751.1 408 88.7
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 5.7e-215 750.7 404 88.9
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 7.5e-215 750.4 410 89.0
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 1.7e-214 749.2 408 89.0
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 1.7e-214 749.2 420 86.7
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 2.2e-214 748.8 407 88.7
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 2.8e-214 748.4 408 87.7
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 3.7e-214 748.0 408 87.7
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 3.7e-214 748.0 408 86.8
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 4.8e-214 747.7 409 88.0
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 6.3e-214 747.3 407 86.7
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 8.2e-214 746.9 407 87.5
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 8.2e-214 746.9 407 88.9
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 2.4e-213 745.3 407 88.2
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 2.4e-213 745.3 408 86.8
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 2.4e-213 745.3 408 87.0
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 3.1e-213 745.0 408 87.3
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 4.1e-213 744.6 407 87.0
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 7.0e-213 743.8 408 85.5
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 9.1e-213 743.4 408 86.5
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 1.2e-212 743.0 408 86.5
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 1.6e-212 742.7 407 87.0
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 7.7e-212 740.3 399 89.5
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 1.0e-211 740.0 408 86.5
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 1.3e-211 739.6 408 86.3
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 1.3e-211 739.6 408 86.3
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 1.3e-211 739.6 408 86.3
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 2.2e-211 738.8 409 87.8
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 2.2e-211 738.8 473 78.0
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 6.5e-211 737.3 408 87.3
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 8.5e-211 736.9 408 84.8
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 1.5e-210 736.1 409 86.1
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 1.5e-210 736.1 409 86.1
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 2.5e-210 735.3 408 86.5
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 2.5e-210 735.3 408 87.5
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 3.2e-210 734.9 408 85.8
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 5.5e-210 734.2 408 86.8
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 7.2e-210 733.8 408 85.0
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 3.6e-209 731.5 435 82.3
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 4.7e-209 731.1 408 84.8
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 6.8e-208 727.2 380 93.2
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 8.3e-206 720.3 407 83.8
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 8.3e-206 720.3 384 90.9
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 1.8e-205 719.2 407 83.3
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 3.1e-205 718.4 385 88.6
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 5.4e-205 717.6 408 83.3
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 6.6e-203 710.7 519 70.3
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 1.9e-202 709.1 450 75.8
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 4.0e-200 701.4 388 87.9
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 2.8e-198 695.3 412 81.8
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 6.3e-198 694.1 408 82.8
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 1.1e-197 693.3 357 93.3
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 9.2e-197 690.3 417 81.5
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 8.9e-192 673.7 356 90.2
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 1.9e-189 666.0 402 79.9
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 9.2e-189 663.7 408 77.0
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 8.6e-187 657.1 357 87.1
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 1.9e-186 656.0 401 78.8
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 1.8e-184 649.4 407 79.9
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 3.4e-175 618.6 406 74.1
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 3.2e-173 612.1 320 91.6
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 9.2e-173 610.5 405 70.9
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 4.6e-172 608.2 404 71.3
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 5.1e-171 604.7 380 73.9
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 1.5e-162 576.6 400 69.0
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 2.6e-159 565.8 390 74.1
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 8.4e-158 560.8 408 69.9
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 4.9e-150 535.0 318 81.8
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 8.7e-147 524.2 310 84.2
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 3.0e-139 499.2 400 61.5
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 1.1e-130 470.7 245 91.8
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 2.4e-128 463.0 258 85.7
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 3.8e-126 455.7 368 62.2
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 5.1e-123 445.3 238 89.9
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 3.4e-119 432.6 384 56.2
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 3.9e-115 419.1 228 88.6
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 6.5e-110 401.7 239 81.2
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 1.5e-101 374.0 196 89.8
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 1.0e-78 298.1 419 42.7
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 2.6e-74 283.5 390 43.8
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 1.1e-72 278.1 180 75.6
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 4.3e-69 266.2 180 71.1
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 2.9e-57 226.9 123 87.8
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 2.9e-57 226.9 141 73.8
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 4.9e-57 226.1 140 74.3
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 9.9e-50 201.8 130 77.7
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 3.0e-22 110.5 128 50.8
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 2.1e-20 104.4 58 81.0
Lsat_1_v5_gn_9_118621 Lactuca sativa HOM05D006894 ORTHO05D008724 4.5e-10 70.1 332 22.9
PGR042G0448 Punica granatum HOM05D006894 ORTHO05D008724 1.4e-08 65.1 326 22.4


User provided reference genes

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