Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p096850 Quercus lobata HOM05D004186 ORTHO05D006965 1.7e-287 991.9 478 100.0
CiPaw.08G037900 Carya illinoinensis HOM05D004186 ORTHO05D006965 4.4e-259 897.5 477 90.6
CiPaw.07G189100 Carya illinoinensis HOM05D004186 ORTHO05D006965 1.0e-255 886.3 472 90.5
Manes.06G027600 Manihot esculenta HOM05D004186 ORTHO05D006965 1.0e-255 886.3 478 87.7
Duzib034G0005 Durio zibethinus HOM05D004186 ORTHO05D006965 8.6e-255 883.2 477 88.1
Dinv42759 Davidia involucrata HOM05D004186 ORTHO05D006965 2.5e-254 881.7 480 87.9
Dinv43343 Davidia involucrata HOM05D004186 ORTHO05D006965 2.5e-254 881.7 480 87.9
Prupe.1G091900 Prunus persica HOM05D004186 ORTHO05D006965 9.6e-254 879.8 479 86.8
Duzib114G0309 Durio zibethinus HOM05D004186 ORTHO05D006965 1.6e-253 879.0 477 87.6
CANSAT11G0657 Cannabis sativa HOM05D004186 ORTHO05D006965 4.7e-253 877.5 478 86.8
FvH4_4g32520 Fragaria vesca HOM05D004186 ORTHO05D006965 8.1e-253 876.7 478 87.2
GSVIVG01029114001 Vitis vinifera HOM05D004186 ORTHO05D006965 8.1e-253 876.7 479 87.7
MD16G1265900 Malus domestica HOM05D004186 ORTHO05D006965 1.4e-252 875.9 477 86.6
RcHm_v2.0_Chr4g0403601 Rosa chinensis HOM05D004186 ORTHO05D006965 1.4e-252 875.9 478 87.4
Thecc.10G167400 Theobroma cacao HOM05D004186 ORTHO05D006965 1.8e-252 875.5 477 86.8
CSS0041373 Camellia sinensis var. sinensis HOM05D004186 ORTHO05D006965 2.4e-252 875.2 476 87.8
TAR625G0733 Trochodendron aralioides HOM05D004186 ORTHO05D006965 3.1e-252 874.8 479 87.3
Oeu054233.2 Olea europaea HOM05D004186 ORTHO05D006965 2.0e-251 872.1 478 86.8
TAR636G1430 Trochodendron aralioides HOM05D004186 ORTHO05D006965 2.0e-251 872.1 479 86.2
FAN12G1387 Fragaria x ananassa HOM05D004186 ORTHO05D006965 3.4e-251 871.3 482 86.7
Duzib128G0608 Durio zibethinus HOM05D004186 ORTHO05D006965 1.7e-250 869.0 474 86.5
Gohir.D05G282700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 1.7e-250 869.0 473 86.7
Gorai.009G296100 Gossypium raimondii HOM05D004186 ORTHO05D006965 1.7e-250 869.0 474 86.5
Potri.018G096049 Populus trichocarpa HOM05D004186 ORTHO05D006965 4.9e-250 867.5 477 86.0
TWI32G0580 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 1.4e-249 865.9 478 85.8
Hma1.2p1_1261F.1_g271200 Hydrangea macrophylla HOM05D004186 ORTHO05D006965 3.2e-249 864.8 481 87.7
PSO063G2639 Papaver somniferum HOM05D004186 ORTHO05D006965 3.2e-249 864.8 477 86.8
Gohir.A05G280700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 5.4e-249 864.0 474 85.9
Ciclev10008154m.g Citrus clementina HOM05D004186 ORTHO05D006965 1.6e-248 862.4 477 85.5
Migut.K00260 Erythranthe guttata HOM05D004186 ORTHO05D006965 4.6e-248 860.9 478 86.8
Sed0027081 Sechium edule HOM05D004186 ORTHO05D006965 7.8e-248 860.1 476 85.3
CsaV3_2G008080 Cucumis sativus L. HOM05D004186 ORTHO05D006965 1.0e-247 859.8 476 84.9
Rhsim01G0008400 Rhododendron simsii HOM05D004186 ORTHO05D006965 6.6e-247 857.1 482 85.3
Atru.chr7.741 Acer truncatum HOM05D004186 ORTHO05D006965 1.1e-246 856.3 476 84.9
RhsimUnG0079700 Rhododendron simsii HOM05D004186 ORTHO05D006965 1.5e-246 855.9 484 84.9
Lsat_1_v5_gn_8_66460 Lactuca sativa HOM05D004186 ORTHO05D006965 4.3e-246 854.4 478 84.9
SGA_v2.0_scaffold69G23283 Striga asiatica HOM05D004186 ORTHO05D006965 4.3e-246 854.4 476 84.5
Cc06_g13640 Coffea canephora HOM05D004186 ORTHO05D006965 9.6e-246 853.2 478 85.1
Thhalv10013406m.g Eutrema salsugineum HOM05D004186 ORTHO05D006965 2.1e-245 852.0 478 84.3
Migut.J01448 Erythranthe guttata HOM05D004186 ORTHO05D006965 3.6e-245 851.3 477 84.5
HanXRQChr05g0136751 Helianthus annuus HOM05D004186 ORTHO05D006965 3.6e-245 851.3 484 84.1
PSO782G1691 Papaver somniferum HOM05D004186 ORTHO05D006965 4.8e-245 850.9 477 86.0
ClCG11G012460 Citrullus lanatus HOM05D004186 ORTHO05D006965 6.2e-245 850.5 476 83.8
Lj4g0000380 Lotus japonicus HOM05D004186 ORTHO05D006965 1.1e-244 849.7 479 84.6
Actinidia04122 Actinidia chinensis HOM05D004186 ORTHO05D006965 1.4e-244 849.4 478 85.4
ECA236G4107 Erigeron canadensis HOM05D004186 ORTHO05D006965 1.8e-244 849.0 479 85.4
Sp6g19340 Schrenkiella parvula HOM05D004186 ORTHO05D006965 2.4e-244 848.6 477 83.4
MELO3C004075.2 Cucumis melo HOM05D004186 ORTHO05D006965 3.1e-244 848.2 476 83.4
Ca_21198_v3 Cicer arietinum L. HOM05D004186 ORTHO05D006965 4.0e-244 847.8 480 84.6
VMungo1215G1034 Vigna mungo HOM05D004186 ORTHO05D006965 6.9e-244 847.0 479 84.3
C09p49530 Brassica napus HOM05D004186 ORTHO05D006965 9.0e-244 846.7 477 83.9
AT5G57655 Arabidopsis thaliana HOM05D004186 ORTHO05D006965 1.2e-243 846.3 477 83.0
Manes.02G134800 Manihot esculenta HOM05D004186 ORTHO05D006965 1.5e-243 845.9 477 83.0
Carub.0008s1816 Capsella rubella HOM05D004186 ORTHO05D006965 2.0e-243 845.5 477 83.2
BcaC04g19942 Brassica carinata HOM05D004186 ORTHO05D006965 2.6e-243 845.1 477 83.6
BraA10t43588Z Brassica rapa HOM05D004186 ORTHO05D006965 2.6e-243 845.1 477 83.0
A10p15060 Brassica napus HOM05D004186 ORTHO05D006965 3.4e-243 844.7 477 83.0
AL8G33680 Arabidopsis lyrata HOM05D004186 ORTHO05D006965 4.4e-243 844.3 470 84.3
Eucgr.G01193 Eucalyptus grandis HOM05D004186 ORTHO05D006965 5.8e-243 844.0 493 82.2
Phvul.003G148700 Phaseolus vulgaris HOM05D004186 ORTHO05D006965 2.2e-242 842.0 479 84.1
SalBow6G3740 Salvia bowleyana HOM05D004186 ORTHO05D006965 4.9e-242 840.9 484 83.1
DCAR_017956 Daucus carota HOM05D004186 ORTHO05D006965 6.4e-242 840.5 477 83.4
Lj9A689G39 Lonicera japonica HOM05D004186 ORTHO05D006965 8.4e-242 840.1 457 86.7
BcaB08g36123 Brassica carinata HOM05D004186 ORTHO05D006965 1.1e-241 839.7 477 82.8
Cpa.g.sc75.2 Carica papaya HOM05D004186 ORTHO05D006965 1.9e-241 839.0 476 81.7
Lalb_Chr11g0072331 Lupinus albus HOM05D004186 ORTHO05D006965 2.4e-241 838.6 479 83.1
Glyma.17G066200 Glycine max HOM05D004186 ORTHO05D006965 3.2e-241 838.2 479 83.9
BolC9t57806H Brassica oleracea HOM05D004186 ORTHO05D006965 4.2e-241 837.8 485 82.3
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 4.2e-241 837.8 478 83.7
Cpa.g.sc95.75 Carica papaya HOM05D004186 ORTHO05D006965 1.6e-240 835.9 476 81.7
ATR0580G261 Amborella trichopoda HOM05D004186 ORTHO05D006965 2.1e-240 835.5 478 83.7
Sopen07g002760 Solanum pennellii HOM05D004186 ORTHO05D006965 2.7e-240 835.1 475 82.9
Solyc07g006650.4 Solanum lycopersicum HOM05D004186 ORTHO05D006965 3.5e-240 834.7 475 82.7
arahy.Tifrunner.gnm1.ann1.CAM23Q Arachis hypogaea HOM05D004186 ORTHO05D006965 4.6e-240 834.3 478 83.9
CARHR271410 Cardamine hirsuta HOM05D004186 ORTHO05D006965 4.6e-240 834.3 478 81.6
TPR.G5301 Trifolium pratense HOM05D004186 ORTHO05D006965 5.1e-239 830.9 477 82.4
FAN22G1241 Fragaria x ananassa HOM05D004186 ORTHO05D006965 8.7e-239 830.1 492 82.3
Medtr4g128840 Medicago truncatula HOM05D004186 ORTHO05D006965 1.1e-238 829.7 480 82.3
PGSC0003DMG400027477 Solanum tuberosum HOM05D004186 ORTHO05D006965 1.1e-238 829.7 475 83.2
Aa31LG3G13490 Aethionema arabicum HOM05D004186 ORTHO05D006965 9.6e-238 826.6 478 82.0
CDE04G0897 Ceratophyllum demersum HOM05D004186 ORTHO05D006965 9.6e-238 826.6 475 84.2
THA.LOC104813530 Tarenaya hassleriana HOM05D004186 ORTHO05D006965 9.6e-238 826.6 477 81.8
HPP92_013702 Vanilla planifolia HOM05D004186 ORTHO05D006965 2.1e-237 825.5 480 81.9
MSTRG.19694 Avicennia marina HOM05D004186 ORTHO05D006965 4.0e-236 821.2 478 81.6
Nitab4.5_0001212g0070 Nicotiana tabacum HOM05D004186 ORTHO05D006965 9.0e-236 820.1 441 87.1
Nitab4.5_0000244g0180 Nicotiana tabacum HOM05D004186 ORTHO05D006965 4.5e-235 817.8 440 86.8
EL10Ac8g18262 Beta vulgaris HOM05D004186 ORTHO05D006965 9.9e-235 816.6 470 82.6
Sc08g0005470 Simmondsia chinensis HOM05D004186 ORTHO05D006965 1.3e-234 816.2 477 80.7
Peaxi162Scf00942g00127 Petunia axillaris HOM05D004186 ORTHO05D006965 3.8e-234 814.7 477 82.8
AUR62039990 Chenopodium quinoa HOM05D004186 ORTHO05D006965 1.1e-233 813.1 470 82.8
Psat0ss9363g0320 Pisum sativum HOM05D004186 ORTHO05D006965 5.4e-233 810.8 507 78.3
CAN.G584.24 Capsicum annuum HOM05D004186 ORTHO05D006965 2.7e-232 808.5 476 81.1
AUR62040296 Chenopodium quinoa HOM05D004186 ORTHO05D006965 3.5e-232 808.1 470 82.1
Haze_22131 Corylus avellana HOM05D004186 ORTHO05D006965 2.5e-230 802.0 506 79.1
Ah.14g083970 Amaranthus hybridus HOM05D004186 ORTHO05D006965 4.3e-230 801.2 477 80.9
Os07g0669100 Oryza sativa ssp. japonica HOM05D004186 ORTHO05D006965 4.3e-230 801.2 479 79.5
Zm00001eb330180 Zea mays HOM05D004186 ORTHO05D006965 1.3e-229 799.7 460 81.3
arahy.Tifrunner.gnm1.ann1.YY53PU Arachis hypogaea HOM05D004186 ORTHO05D006965 2.8e-229 798.5 503 78.3
Zm00001eb111020 Zea mays HOM05D004186 ORTHO05D006965 2.0e-227 792.3 454 81.5
FAN07G2198 Fragaria x ananassa HOM05D004186 ORTHO05D006965 1.3e-226 789.6 502 77.9
Gohir.A06G175800 Gossypium hirsutum HOM05D004186 ORTHO05D006965 1.1e-225 786.6 474 79.5
MBI14_g39543_MAGBIO Magnolia biondii HOM05D004186 ORTHO05D006965 5.7e-222 774.2 474 78.9
arahy.Tifrunner.gnm1.ann1.WFV6V5 Arachis hypogaea HOM05D004186 ORTHO05D006965 3.2e-217 758.4 479 76.6
arahy.Tifrunner.gnm1.ann1.QC9P0E Arachis hypogaea HOM05D004186 ORTHO05D006965 9.3e-217 756.9 479 77.0
Hund26412 Selenicereus undatus HOM05D004186 ORTHO05D006965 1.8e-212 742.7 453 79.0
vmacro13097 Vaccinium macrocarpon HOM05D004186 ORTHO05D006965 6.5e-210 734.2 501 74.1
Nn2g12639 Nelumbo nucifera HOM05D004186 ORTHO05D006965 2.1e-208 729.2 480 75.0
Dinv41278 Davidia involucrata HOM05D004186 ORTHO05D006965 2.5e-206 722.2 384 86.5
Mapoly0030s0071 Marchantia polymorpha HOM05D004186 ORTHO05D006965 3.1e-204 715.3 468 72.4
Pp3c6_6020 Physcomitrium patens HOM05D004186 ORTHO05D006965 7.7e-203 710.7 475 71.4
AagrBONN_evm.TU.Sc2ySwM_228.4505 Anthoceros agrestis HOM05D004186 ORTHO05D006965 1.1e-198 696.8 444 74.5
SMO259G0020 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 1.5e-198 696.4 471 70.3
Oeu052240.1 Olea europaea HOM05D004186 ORTHO05D006965 5.0e-194 681.4 482 71.4
unitig_26.g9078 Utricularia gibba HOM05D004186 ORTHO05D006965 5.9e-187 657.9 462 71.0
Gohir.D06G185466 Gossypium hirsutum HOM05D004186 ORTHO05D006965 5.7e-182 641.3 367 80.1
Gorai.010G217000 Gossypium raimondii HOM05D004186 ORTHO05D006965 4.1e-180 635.2 367 79.8
Aqoxy7G03142 Aquilegia oxysepala HOM05D004186 ORTHO05D006965 1.5e-169 600.1 478 64.0
Hund09010 Selenicereus undatus HOM05D004186 ORTHO05D006965 5.6e-169 598.2 456 66.0
SalBow6G1169 Salvia bowleyana HOM05D004186 ORTHO05D006965 1.2e-152 543.9 406 69.7
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 8.6e-146 521.2 304 78.3
arahy.Tifrunner.gnm1.ann1.6S67WQ Arachis hypogaea HOM05D004186 ORTHO05D006965 2.6e-142 509.6 280 86.8
MCO08G279 Micromonas commoda HOM05D004186 ORTHO05D006965 3.4e-142 509.2 410 62.4
arahy.Tifrunner.gnm1.ann1.LBE3WY Arachis hypogaea HOM05D004186 ORTHO05D006965 4.9e-141 505.4 275 86.9
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 2.7e-139 499.6 304 76.3
PRCOL_00002845 Prasinoderma coloniale HOM05D004186 ORTHO05D006965 4.3e-137 492.3 452 54.4
MD13G1265000 Malus domestica HOM05D004186 ORTHO05D006965 3.1e-135 486.1 306 75.5
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 1.6e-123 447.2 308 69.5
SEGI_37950 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 2.3e-106 390.2 246 74.4
TWI34G1113 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 9.6e-105 384.8 210 88.6
BcaC03g14138 Brassica carinata HOM05D004186 ORTHO05D032859 1.3e-98 364.4 416 48.8
SEGI_15575 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 6.7e-98 362.1 227 75.8
SEGI_36533 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 6.7e-98 362.1 227 75.8
BolC2t07527H Brassica oleracea HOM05D004186 ORTHO05D032859 6.1e-91 339.0 463 45.4
MD13G1264900 Malus domestica HOM05D004186 ORTHO05D006965 8.2e-88 328.6 199 81.9
C02p14070 Brassica napus HOM05D004186 ORTHO05D032859 5.0e-77 292.7 427 43.1
SalBow6G2747 Salvia bowleyana HOM05D004186 ORTHO05D015971 3.7e-72 276.6 148 83.1
A02p08350 Brassica napus HOM05D004186 ORTHO05D015971 2.4e-71 273.9 179 71.5
BraA02t05904Z Brassica rapa HOM05D004186 ORTHO05D015971 1.6e-70 271.2 179 70.9
arahy.Tifrunner.gnm1.ann1.P4UX3D Arachis hypogaea HOM05D004186 ORTHO05D015971 1.4e-66 258.1 171 71.9
arahy.Tifrunner.gnm1.ann1.NDN785 Arachis hypogaea HOM05D004186 ORTHO05D015971 6.8e-66 255.8 171 71.3
Rhsim01G0008600 Rhododendron simsii HOM05D004186 ORTHO05D015971 5.7e-49 199.5 110 82.7
RhsimUnG0079500 Rhododendron simsii HOM05D004186 ORTHO05D015971 5.7e-49 199.5 110 82.7
A02p08340 Brassica napus HOM05D004186 ORTHO05D006965 1.4e-47 194.9 111 82.0
SMO181G0029 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 7.3e-36 156.0 105 68.6
FAN17G2491 Fragaria x ananassa HOM05D004186 ORTHO05D006965 2.1e-35 154.5 94 85.1
HanXRQChr09g0269751 Helianthus annuus HOM05D004186 ORTHO05D015971 3.6e-35 153.7 97 73.2
RcHm_v2.0_Chr5g0046871 Rosa chinensis HOM05D004186 ORTHO05D015971 2.6e-33 147.5 81 81.5
TAR383G0623 Trochodendron aralioides HOM05D004186 ORTHO05D415797 7.8e-30 136.0 91 70.3
RcHm_v2.0_Chr5g0036521 Rosa chinensis HOM05D004186 ORTHO05D015971 1.3e-29 135.2 77 81.8
Ah.08g214930 Amaranthus hybridus HOM05D004186 ORTHO05D061406 5.1e-21 106.7 135 43.0
Zm00001eb101000 Zea mays HOM05D004186 ORTHO05D000030 2.5e-20 104.4 65 70.8
Zm00001eb265380 Zea mays HOM05D004186 ORTHO05D008381 2.5e-20 104.4 56 82.1
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 1.3e-16 92.0 72 68.1
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 1.3e-16 92.0 72 68.1
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 4.2e-15 87.0 75 54.7
SalBow7G3706 Salvia bowleyana HOM05D004186 ORTHO05D352404 2.7e-14 84.3 72 66.7
Sc14g0005990 Simmondsia chinensis HOM05D004186 ORTHO05D039000 4.6e-14 83.6 46 78.3
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 8.7e-13 79.3 46 78.3
EL10Ac2g04384 Beta vulgaris HOM05D004186 ORTHO05D039000 2.0e-09 68.2 34 82.4
C08p17140 Brassica napus HOM05D004186 ORTHO05D011383 2.2e-08 64.7 55 54.5
BolC8t49341H Brassica oleracea HOM05D004186 ORTHO05D011383 2.2e-08 64.7 55 54.5
Lsat_1_v5_gn_9_37000 Lactuca sativa HOM05D004186 ORTHO05D011383 2.9e-08 64.3 58 58.6
BcaC01g06364 Brassica carinata HOM05D004186 ORTHO05D011383 4.9e-08 63.5 81 44.4
C03p16540 Brassica napus HOM05D004186 ORTHO05D011383 4.9e-08 63.5 85 42.4
C07p46470 Brassica napus HOM05D001159 ORTHO05D011383 4.9e-08 63.5 81 42.0
SGA_v2.0_scaffold66G22476 Striga asiatica HOM05D004186 ORTHO05D405288 1.1e-07 62.4 34 85.3
C09p03000 Brassica napus HOM05D001159 ORTHO05D011383 4.2e-07 60.5 81 40.7
BolC9t53230H Brassica oleracea HOM05D001159 ORTHO05D011383 4.2e-07 60.5 81 40.7
BcaC05g27566 Brassica carinata HOM05D001159 ORTHO05D011383 9.3e-07 59.3 55 52.7
C05p35490 Brassica napus HOM05D001159 ORTHO05D011383 9.3e-07 59.3 55 52.7
BolC7t45165H Brassica oleracea HOM05D001159 ORTHO05D011383 1.6e-06 58.5 81 40.7
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 1.6e-06 58.5 35 74.3
BcaC07g38783 Brassica carinata HOM05D002592 ORTHO05D011383 2.7e-06 57.8 48 54.2


User provided reference genes

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