Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p088328 Quercus lobata HOM05D003776 ORTHO05D004459 0.0e+00 3353.5 1723 100.0
Cfa003371 Carpinus fangiana HOM05D003776 ORTHO05D004459 0.0e+00 3011.5 1709 90.2
Haze_25580 Corylus avellana HOM05D003776 ORTHO05D004459 0.0e+00 2896.3 1742 86.3
CiPaw.03G244000 Carya illinoinensis HOM05D003776 ORTHO05D004459 0.0e+00 2808.9 1630 87.1
Atru.chr7.1164 Acer truncatum HOM05D003776 ORTHO05D004459 0.0e+00 2732.6 1713 82.0
Thecc.09G126200 Theobroma cacao HOM05D003776 ORTHO05D004459 0.0e+00 2732.2 1713 81.7
Prupe.7G242500 Prunus persica HOM05D003776 ORTHO05D004459 0.0e+00 2729.5 1712 81.4
MD02G1032900 Malus domestica HOM05D003776 ORTHO05D004459 0.0e+00 2711.8 1711 80.9
GSVIVG01015528001 Vitis vinifera HOM05D003776 ORTHO05D004459 0.0e+00 2711.4 1713 80.9
CANSAT11G0130 Cannabis sativa HOM05D003776 ORTHO05D004459 0.0e+00 2701.4 1711 80.1
RcHm_v2.0_Chr2g0088511 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2662.9 1712 79.3
Manes.05G119700 Manihot esculenta HOM05D003776 ORTHO05D004459 0.0e+00 2661.7 1714 78.8
FAN26G1438 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2654.8 1712 78.7
FvH4_1g03320 Fragaria vesca HOM05D003776 ORTHO05D004459 0.0e+00 2645.2 1712 78.6
TAR625G0211 Trochodendron aralioides HOM05D003776 ORTHO05D004459 0.0e+00 2635.9 1715 78.8
FAN23G1640 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2630.5 1718 78.0
Dinv36529 Davidia involucrata HOM05D003776 ORTHO05D004459 0.0e+00 2614.3 1729 78.6
TWI34G1787 Tripterygium wilfordii HOM05D003776 ORTHO05D004459 0.0e+00 2613.2 1709 78.1
Rhsim03G0247900 Rhododendron simsii HOM05D003776 ORTHO05D004459 0.0e+00 2612.4 1740 77.6
Potri.006G119600 Populus trichocarpa HOM05D003776 ORTHO05D004459 0.0e+00 2609.3 1713 78.2
Glyma.06G222100 Glycine max HOM05D003776 ORTHO05D004459 0.0e+00 2607.0 1711 77.6
Gorai.001G042000 Gossypium raimondii HOM05D003776 ORTHO05D004459 0.0e+00 2602.4 1728 77.8
FAN28G2120 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2587.8 1711 77.2
Lj3g0001115 Lotus japonicus HOM05D003776 ORTHO05D004459 0.0e+00 2568.9 1714 76.6
Lalb_Chr11g0072121 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 2565.4 1724 76.5
vmacro06129 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 0.0e+00 2559.3 1755 75.7
FAN19G1245 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2558.9 1718 76.4
Nn8g39448 Nelumbo nucifera HOM05D003776 ORTHO05D004459 0.0e+00 2555.4 1716 75.6
Phvul.009G198200 Phaseolus vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 2543.1 1712 76.5
Medtr7g099880 Medicago truncatula HOM05D003776 ORTHO05D004459 0.0e+00 2539.6 1717 76.1
Eucgr.C04218 Eucalyptus grandis HOM05D003776 ORTHO05D004459 0.0e+00 2535.0 1711 76.2
Psat1g024680 Pisum sativum HOM05D003776 ORTHO05D004459 0.0e+00 2534.6 1717 75.4
TPR.G21471 Trifolium pratense HOM05D003776 ORTHO05D004459 0.0e+00 2533.1 1716 75.9
Ca_14403_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 0.0e+00 2528.1 1717 75.8
Sabra06G0094200 Salix brachista HOM05D003776 ORTHO05D004459 0.0e+00 2511.5 1838 71.9
Duzib168G2222 Durio zibethinus HOM05D003776 ORTHO05D004459 0.0e+00 2500.3 1718 76.1
CsaV3_2G002830 Cucumis sativus L. HOM05D003776 ORTHO05D004459 0.0e+00 2486.1 1713 74.0
Gohir.A07G035800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 2484.1 1587 79.8
Sed0006794 Sechium edule HOM05D003776 ORTHO05D004459 0.0e+00 2476.4 1714 73.7
Sopen12g002420 Solanum pennellii HOM05D003776 ORTHO05D004459 0.0e+00 2459.9 1716 73.4
Solyc12g006480.2 Solanum lycopersicum HOM05D003776 ORTHO05D004459 0.0e+00 2453.7 1716 73.4
Cc06_g08530 Coffea canephora HOM05D003776 ORTHO05D004459 0.0e+00 2445.6 1715 72.8
THA.LOC104808989 Tarenaya hassleriana HOM05D003776 ORTHO05D004459 0.0e+00 2421.7 1710 72.0
PGR102G3028 Punica granatum HOM05D003776 ORTHO05D004459 0.0e+00 2420.2 1716 72.1
Lsat_1_v5_gn_5_96021 Lactuca sativa HOM05D003776 ORTHO05D004459 0.0e+00 2418.7 1718 71.8
ECA234G1804 Erigeron canadensis HOM05D003776 ORTHO05D004459 0.0e+00 2410.9 1712 71.6
Aqoxy7G02178 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2401.7 1714 72.1
Sc08g0006640 Simmondsia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2396.3 1714 71.6
Aqoxy3G01756 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2381.7 1714 71.6
Nitab4.5_0002658g0150 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 2374.4 1723 71.3
MSTRG.19598 Avicennia marina HOM05D003776 ORTHO05D004459 0.0e+00 2372.8 1715 70.8
Peaxi162Scf01211g00016 Petunia axillaris HOM05D003776 ORTHO05D004459 0.0e+00 2372.0 1778 69.5
PSO455G0084 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 2358.6 1721 71.1
PSO170G4267 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 2349.3 1716 71.0
HanXRQChr10g0315491 Helianthus annuus HOM05D003776 ORTHO05D004459 0.0e+00 2345.9 1712 70.4
Ciclev10007244m.g Citrus clementina HOM05D003776 ORTHO05D004459 0.0e+00 2328.5 1508 79.5
Sp4g09050 Schrenkiella parvula HOM05D003776 ORTHO05D004459 0.0e+00 2324.7 1708 70.0
DCAR_017818 Daucus carota HOM05D003776 ORTHO05D004459 0.0e+00 2323.9 1776 68.1
CARHR118630 Cardamine hirsuta HOM05D003776 ORTHO05D004459 0.0e+00 2323.5 1710 70.2
Gohir.D07G039800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 2322.4 1474 80.3
VMungo1309G0107 Vigna mungo HOM05D003776 ORTHO05D004459 0.0e+00 2321.6 2144 60.1
AT5G51200 Arabidopsis thaliana HOM05D003776 ORTHO05D004459 0.0e+00 2321.2 1708 69.6
AL8G25470 Arabidopsis lyrata HOM05D003776 ORTHO05D004459 0.0e+00 2317.0 1711 69.7
EL10Ac8g18652 Beta vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 2313.1 1733 69.6
Migut.J01158 Erythranthe guttata HOM05D003776 ORTHO05D004459 0.0e+00 2308.5 1715 69.1
Carub.0008s1091 Capsella rubella HOM05D003776 ORTHO05D004459 0.0e+00 2308.1 1707 69.8
MELO3C004510.2 Cucumis melo HOM05D003776 ORTHO05D004459 0.0e+00 2301.2 1843 66.1
ClCG11G003010 Citrullus lanatus HOM05D003776 ORTHO05D004459 0.0e+00 2261.9 1713 69.2
Hund09133 Selenicereus undatus HOM05D003776 ORTHO05D004459 0.0e+00 2256.5 1714 69.0
Thhalv10002339m.g Eutrema salsugineum HOM05D003776 ORTHO05D004459 0.0e+00 2253.8 1708 67.9
AUR62011127 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2253.4 1714 68.0
AUR62013362 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2242.6 1710 67.9
Lj7C629G11 Lonicera japonica HOM05D003776 ORTHO05D004459 0.0e+00 2236.8 1746 67.8
BraA07t29494Z Brassica rapa HOM05D003776 ORTHO05D004459 0.0e+00 2235.7 1746 66.8
A07p17720 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 2224.1 1712 67.4
C07p25670 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 2223.4 1712 67.3
BolC7t43085H Brassica oleracea HOM05D003776 ORTHO05D004459 0.0e+00 2218.7 1713 67.3
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 0.0e+00 2181.4 1710 66.3
Nitab4.5_0008846g0010 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 1799.6 1425 66.5
arahy.Tifrunner.gnm1.ann1.GK8SHH Arachis hypogaea HOM05D003776 ORTHO05D004459 0.0e+00 1753.8 1299 70.9
ATR0322G072 Amborella trichopoda HOM05D003776 ORTHO05D004459 0.0e+00 1745.3 1407 63.7
Oeu055885.1 Olea europaea HOM05D003776 ORTHO05D004459 0.0e+00 1667.5 1251 69.1
Zm00001eb235620 Zea mays HOM05D003776 ORTHO05D004459 0.0e+00 1665.2 1442 59.7
COL.COLO4_35084 Corchorus olitorius HOM05D003776 ORTHO05D004459 0.0e+00 1632.5 1013 81.6
Pp3c4_20350 Physcomitrium patens HOM05D003776 ORTHO05D004459 0.0e+00 1604.7 1746 49.3
Mapoly0052s0095 Marchantia polymorpha HOM05D003776 ORTHO05D004459 0.0e+00 1545.4 1733 48.1
AagrBONN_evm.TU.Sc2ySwM_228.87 Anthoceros agrestis HOM05D003776 ORTHO05D004459 0.0e+00 1516.5 1760 47.3
Os02g0202250 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 0.0e+00 1417.5 1247 59.4
SMO347G0235 Selaginella moellendorffii HOM05D003776 ORTHO05D004459 0.0e+00 1405.2 1742 44.3
Actinidia26393 Actinidia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1402.9 1713 50.6
Lalb_Chr08g0234811 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1355.1 961 73.8
CDE02G1576 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 0.0e+00 1272.7 1125 61.0
Ah.09g226230 Amaranthus hybridus HOM05D003776 ORTHO05D004459 0.0e+00 1261.5 1038 63.6
CBR_g37692 Chara braunii HOM05D003776 ORTHO05D004459 0.0e+00 1163.7 1782 40.0
HPP92_008667 Vanilla planifolia HOM05D003776 ORTHO05D004459 0.0e+00 1113.2 1251 50.3
RcHm_v2.0_Chr2g0152361 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1084.3 1465 47.0
Lalb_Chr08g0234831 Lupinus albus HOM05D003776 ORTHO05D004459 5.9e-311 1071.6 665 79.4
RcHm_v2.0_Chr2g0152391 Rosa chinensis HOM05D003776 ORTHO05D004459 3.9e-281 972.6 1465 43.5
Duzib187G1323 Durio zibethinus HOM05D003776 ORTHO05D004459 1.3e-276 957.6 699 72.2
Ah.09g226220 Amaranthus hybridus HOM05D003776 ORTHO05D004459 2.2e-255 887.1 694 66.0
CDE02G1439 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 3.6e-234 816.6 605 67.9
CAN.G816.2 Capsicum annuum HOM05D003776 ORTHO05D004459 9.4e-227 792.0 607 68.2
Cpa.g.sc75.31 Carica papaya HOM05D003776 ORTHO05D004459 9.2e-214 748.8 519 74.0
unitig_26.g8982 Utricularia gibba HOM05D003776 ORTHO05D004459 2.7e-213 747.3 600 62.0
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 1.5e-208 731.5 796 54.8
FvH4_6g38790 Fragaria vesca HOM05D003776 ORTHO05D004459 3.9e-204 716.8 877 49.8
SEGI_34338 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 6.2e-202 709.5 699 52.5
HPP92_008649 Vanilla planifolia HOM05D003776 ORTHO05D004459 2.1e-197 694.5 596 58.9
Hma1.2p1_0018F.1_g012430 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 5.1e-180 636.7 496 69.6
Pp3c23_3420 Physcomitrium patens HOM05D003776 ORTHO05D004459 1.1e-177 629.0 864 41.6
Pp3c20_13260 Physcomitrium patens HOM05D003776 ORTHO05D004459 6.6e-172 609.8 871 42.4
Cpa.g.sc75.30 Carica papaya HOM05D003776 ORTHO05D004459 2.5e-142 511.5 413 70.2
arahy.Tifrunner.gnm1.ann1.6DBV70 Arachis hypogaea HOM05D003776 ORTHO05D004459 2.0e-128 465.3 423 61.0
Hma1.2p1_2368F.1_g320720 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 1.8e-108 399.1 352 64.2
Hma1.2p1_0018F.1_g012440 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 4.3e-102 377.9 232 81.0
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 7.5e-99 367.1 339 59.0
Oeu055886.1 Olea europaea HOM05D003776 ORTHO05D004459 1.1e-97 363.2 318 62.9
FAN19G2182 Fragaria x ananassa HOM05D003776 ORTHO05D004459 1.6e-93 349.4 278 66.9
Ca_29538_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 2.7e-88 332.0 264 67.8
Lsat_1_v5_gn_7_7080 Lactuca sativa HOM05D003776 ORTHO05D004459 2.5e-86 325.5 305 57.7
HPP92_008648 Vanilla planifolia HOM05D003776 ORTHO05D004459 1.7e-79 302.8 366 46.4
Cpa.g.c32453 Carica papaya HOM05D003776 ORTHO05D004459 2.1e-77 295.8 200 77.5
Os02g0202300 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 4.4e-67 261.5 230 57.0
HanXRQChr12g0373951 Helianthus annuus HOM05D003776 ORTHO05D004459 7.6e-67 260.8 199 67.8
RcHm_v2.0_Chr5g0007291 Rosa chinensis HOM05D003776 ORTHO05D004459 5.1e-63 248.1 334 48.5
HanXRQChr04g0119281 Helianthus annuus HOM05D003776 ORTHO05D004459 6.9e-60 237.7 201 64.7
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 6.9e-60 237.7 227 56.8
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 6.9e-60 237.7 227 56.8
Peaxi162Scf00574g00927 Petunia axillaris HOM05D003776 ORTHO05D004459 2.9e-58 232.3 296 48.3
Lsat_1_v5_gn_3_39400 Lactuca sativa HOM05D003776 ORTHO05D004459 3.3e-54 218.8 216 56.0
FvH4_6g38782 Fragaria vesca HOM05D003776 ORTHO05D004459 7.4e-54 217.6 385 39.7
Actinidia07427 Actinidia chinensis HOM05D003776 ORTHO05D004459 2.8e-53 215.7 168 67.3
RcHm_v2.0_Chr5g0007331 Rosa chinensis HOM05D003776 ORTHO05D004459 5.3e-52 211.5 400 39.0
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 1.1e-49 203.8 202 55.4
PRCOL_00003394 Prasinoderma coloniale HOM05D003776 ORTHO05D004459 1.2e-40 173.7 1263 22.7
Psat7g006280 Pisum sativum HOM05D003776 ORTHO05D004459 1.0e-39 170.6 126 71.4
Psat0s1308g0040 Pisum sativum HOM05D002636 ORTHO05D004459 1.8e-39 169.9 121 71.9
ATR0322G028 Amborella trichopoda HOM05D003776 ORTHO05D004459 2.1e-37 162.9 171 54.4
Lsat_1_v5_gn_5_62781 Lactuca sativa HOM05D003776 ORTHO05D004459 8.2e-37 161.0 302 34.8
SEGI_13925 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.4e-33 150.2 124 57.3
SHI03385 Sapria himalayana HOM05D003776 ORTHO05D004459 1.3e-31 143.7 117 65.8
MCO11G810 Micromonas commoda HOM05D003776 ORTHO05D004459 3.9e-31 142.1 770 23.0
Psat5g250280 Pisum sativum HOM05D003776 ORTHO05D004459 3.9e-31 142.1 132 58.3
Cpa.g.c42453 Carica papaya HOM05D003776 ORTHO05D004459 5.1e-31 141.7 82 82.9
Cpa.g.c37328 Carica papaya HOM05D003776 ORTHO05D004459 6.3e-29 134.8 75 88.0
RcHm_v2.0_Chr3g0479611 Rosa chinensis HOM05D003776 ORTHO05D004459 1.5e-27 130.2 96 65.6
ECA246G1679 Erigeron canadensis HOM05D003776 ORTHO05D004459 3.4e-27 129.0 147 50.3
ATR0322G071 Amborella trichopoda HOM05D003776 ORTHO05D004459 2.6e-22 112.8 74 73.0
CiPaw.03G243900 Carya illinoinensis HOM05D003776 ORTHO05D004459 2.2e-21 109.8 55 98.2
MD16G1253500 Malus domestica HOM05D003776 ORTHO05D004459 8.2e-21 107.8 108 54.6
SEGI_04425 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 4.1e-20 105.5 96 49.0
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 1.5e-19 103.6 66 80.3
Peaxi162Scf00062g02012 Petunia axillaris HOM05D003776 ORTHO05D004459 2.0e-19 103.2 96 59.4
Peaxi162Scf00574g00919 Petunia axillaris HOM05D003776 ORTHO05D004459 2.6e-19 102.8 96 59.4
Cre13.g578100 Chlamydomonas reinhardtii HOM05D003776 ORTHO05D004459 1.7e-18 100.1 475 25.7
RcHm_v2.0_Chr5g0007211 Rosa chinensis HOM05D003776 ORTHO05D004459 2.2e-18 99.8 57 84.2
Actinidia07426 Actinidia chinensis HOM05D003776 ORTHO05D004459 8.5e-18 97.8 82 61.0
arahy.Tifrunner.gnm1.ann1.HIW0J1 Arachis hypogaea HOM05D003776 ORTHO05D004459 2.5e-17 96.3 57 80.7
SHI03382 Sapria himalayana HOM05D003776 ORTHO05D004459 4.4e-14 85.5 53 79.2
SEGI_08250 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.3e-13 84.0 55 76.4
CAN.G1024.1 Capsicum annuum HOM05D003776 ORTHO05D002238 1.1e-12 80.9 89 55.1
Prupe.1G010000 Prunus persica HOM05D003776 ORTHO05D004459 2.4e-12 79.7 61 68.9
HPP92_008668 Vanilla planifolia HOM05D003776 ORTHO05D004459 5.3e-12 78.6 186 31.2
SEGI_19045 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 9.1e-12 77.8 66 57.6
MBI13_g38968_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 3.5e-11 75.9 46 78.3
PSO478G0731 Papaver somniferum HOM05D003776 ORTHO05D004459 7.7e-11 74.7 74 60.8
SHI03418 Sapria himalayana HOM05D000105 ORTHO05D000023 1.7e-10 73.6 144 38.2
SalBow1G5037 Salvia bowleyana HOM05D001898 ORTHO05D002580 2.9e-10 72.8 37 86.5
CBR_g76107 Chara braunii HOM05D003776 ORTHO05D004459 1.5e-09 70.5 64 48.4
CAN.G1616.4 Capsicum annuum HOM05D003776 ORTHO05D004459 5.5e-09 68.6 80 53.8
Sed0006485 Sechium edule HOM05D003776 ORTHO05D004459 1.2e-08 67.4 49 71.4
SEGI_27908 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.6e-08 67.0 43 72.1
FvH4_1g02070 Fragaria vesca HOM05D000524 ORTHO05D035235 3.6e-08 65.9 50 64.0
MBI06_g09275_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 4.7e-08 65.5 63 50.8
SalBow8G3232 Salvia bowleyana HOM05D002512 ORTHO05D002660 1.0e-07 64.3 34 82.4
RcHm_v2.0_Chr5g0007271 Rosa chinensis HOM05D003776 ORTHO05D004459 5.2e-07 62.0 41 70.7
RcHm_v2.0_Chr5g0007071 Rosa chinensis HOM05D003776 ORTHO05D004459 2.0e-06 60.1 47 63.8
Psat6g208560 Pisum sativum HOM05D003776 ORTHO05D004459 3.3e-06 59.3 59 57.6


User provided reference genes

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