Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p086023 Quercus lobata HOM05D006224 ORTHO05D007691 6.1e-227 790.4 382 100.0
QL02p086060 Quercus lobata HOM05D006224 ORTHO05D007691 2.8e-208 728.4 387 92.8
Cfa003290 Carpinus fangiana HOM05D006224 ORTHO05D007691 1.6e-171 606.3 382 78.5
CiPaw.03G235000 Carya illinoinensis HOM05D006224 ORTHO05D007691 4.0e-162 575.1 380 76.1
Haze_25683 Corylus avellana HOM05D006224 ORTHO05D007691 8.7e-157 557.4 382 72.5
Dinv41578 Davidia involucrata HOM05D006224 ORTHO05D007691 1.5e-156 556.6 383 71.3
MD15G1189600 Malus domestica HOM05D006224 ORTHO05D007691 2.9e-152 542.3 373 72.7
Thecc.09G114600 Theobroma cacao HOM05D006224 ORTHO05D007691 1.4e-151 540.0 387 69.3
Manes.16G071100 Manihot esculenta HOM05D006224 ORTHO05D007691 1.3e-149 533.5 369 69.6
Ciclev10008608m.g Citrus clementina HOM05D006224 ORTHO05D007691 1.1e-148 530.4 385 67.8
Cpa.g.sc23.139 Carica papaya HOM05D006224 ORTHO05D007691 1.9e-148 529.6 383 65.8
Atru.chr7.1298 Acer truncatum HOM05D006224 ORTHO05D007691 2.8e-147 525.8 387 66.1
TWI34G0303 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 1.1e-146 523.9 337 72.1
TAR383G0021 Trochodendron aralioides HOM05D006224 ORTHO05D007691 1.1e-146 523.9 384 68.2
Actinidia07421 Actinidia chinensis HOM05D006224 ORTHO05D007691 3.8e-144 515.4 370 68.1
CANSAT56G1593 Cannabis sativa HOM05D006224 ORTHO05D007691 3.2e-143 512.3 385 68.3
RcHm_v2.0_Chr2g0091041 Rosa chinensis HOM05D006224 ORTHO05D007691 1.2e-142 510.4 371 69.0
GSVIVG01015429001 Vitis vinifera HOM05D006224 ORTHO05D007691 1.2e-142 510.4 383 66.6
CANSAT56G0016 Cannabis sativa HOM05D006224 ORTHO05D007691 2.7e-142 509.2 385 68.3
Ciclev10008605m.g Citrus clementina HOM05D006224 ORTHO05D007691 2.7e-142 509.2 391 65.0
TWI34G1467 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 2.7e-142 509.2 366 66.9
Eucgr.E02819 Eucalyptus grandis HOM05D006224 ORTHO05D007691 4.6e-142 508.4 329 73.3
FAN23G1546 Fragaria x ananassa HOM05D006224 ORTHO05D007691 1.0e-141 507.3 366 68.9
Glyma.09G187600 Glycine max HOM05D006224 ORTHO05D007691 2.3e-141 506.1 353 70.8
Hund26119 Selenicereus undatus HOM05D006224 ORTHO05D007691 2.3e-141 506.1 371 66.8
GSVIVG01015431001 Vitis vinifera HOM05D006224 ORTHO05D007691 3.9e-141 505.4 382 66.8
Gorai.004G279400 Gossypium raimondii HOM05D006224 ORTHO05D007691 5.1e-141 505.0 370 67.6
VMungo0464G0392 Vigna mungo HOM05D006224 ORTHO05D007691 5.1e-141 505.0 385 66.8
Duzib187G0885 Durio zibethinus HOM05D006224 ORTHO05D007691 6.7e-141 504.6 384 65.9
Gohir.D08G261300 Gossypium hirsutum HOM05D006224 ORTHO05D007691 8.7e-141 504.2 370 67.3
Sed0009228 Sechium edule HOM05D006224 ORTHO05D007691 5.7e-140 501.5 387 64.6
ClCG06G010400 Citrullus lanatus HOM05D006224 ORTHO05D007691 1.6e-139 500.0 384 64.6
Lalb_Chr14g0371331 Lupinus albus HOM05D006224 ORTHO05D007691 1.6e-139 500.0 370 68.4
FAN19G0264 Fragaria x ananassa HOM05D006224 ORTHO05D007691 3.7e-139 498.8 371 67.7
Glyma.18G076000 Glycine max HOM05D006224 ORTHO05D007691 3.7e-139 498.8 330 73.6
FvH4_1g05360 Fragaria vesca HOM05D006224 ORTHO05D007691 1.1e-138 497.3 366 67.8
ClCG00G002210 Citrullus lanatus HOM05D006224 ORTHO05D007691 1.4e-138 496.9 363 66.9
ClCG06G010410 Citrullus lanatus HOM05D006224 ORTHO05D007691 1.4e-138 496.9 363 66.9
Cc06_g09350 Coffea canephora HOM05D006224 ORTHO05D007691 1.4e-138 496.9 386 64.0
Gohir.A08G240600 Gossypium hirsutum HOM05D006224 ORTHO05D007691 1.8e-138 496.5 375 66.7
MELO3C025318.2 Cucumis melo HOM05D006224 ORTHO05D007691 2.4e-138 496.1 351 68.1
FAN26G2363 Fragaria x ananassa HOM05D006224 ORTHO05D007691 9.0e-138 494.2 366 68.0
Lsat_1_v5_gn_8_94740 Lactuca sativa HOM05D006224 ORTHO05D007691 3.4e-137 492.3 331 71.0
Phvul.004G160700 Phaseolus vulgaris HOM05D006224 ORTHO05D007691 4.5e-137 491.9 361 68.1
vmacro06195 Vaccinium macrocarpon HOM05D006224 ORTHO05D007691 7.6e-137 491.1 359 67.4
Rhsim03G0244800 Rhododendron simsii HOM05D006224 ORTHO05D007691 1.7e-136 490.0 397 61.7
arahy.Tifrunner.gnm1.ann1.X15ZNM Arachis hypogaea HOM05D006224 ORTHO05D007691 3.8e-136 488.8 370 65.1
PGSC0003DMG400024204 Solanum tuberosum HOM05D006224 ORTHO05D007691 3.8e-136 488.8 382 62.8
arahy.Tifrunner.gnm1.ann1.NKB3PQ Arachis hypogaea HOM05D006224 ORTHO05D007691 5.0e-136 488.4 372 65.6
DCAR_010440 Daucus carota HOM05D006224 ORTHO05D007691 5.0e-136 488.4 323 70.9
Solyc07g009170.4 Solanum lycopersicum HOM05D006224 ORTHO05D007691 1.4e-135 486.9 383 62.7
AUR62011028 Chenopodium quinoa HOM05D006224 ORTHO05D007691 4.2e-135 485.3 380 63.9
Sopen07g017160 Solanum pennellii HOM05D006224 ORTHO05D007691 4.2e-135 485.3 382 63.1
Migut.K00473 Erythranthe guttata HOM05D006224 ORTHO05D007691 7.1e-135 484.6 336 68.5
Lj2g0020407 Lotus japonicus HOM05D006224 ORTHO05D007691 1.2e-134 483.8 353 67.7
PSO782G3139 Papaver somniferum HOM05D006224 ORTHO05D007691 2.7e-134 482.6 358 65.4
Potri.006G157700 Populus trichocarpa HOM05D006224 ORTHO05D007691 2.7e-134 482.6 329 70.5
CsaV3_1G030820 Cucumis sativus L. HOM05D006224 ORTHO05D007691 6.1e-134 481.5 362 65.5
PSO063G0773 Papaver somniferum HOM05D006224 ORTHO05D007691 2.3e-133 479.6 324 68.5
HanXRQChr05g0138301 Helianthus annuus HOM05D006224 ORTHO05D007691 3.0e-133 479.2 380 62.9
ClCG00G002580 Citrullus lanatus HOM05D006224 ORTHO05D007691 1.9e-132 476.5 376 63.3
FAN28G2414 Fragaria x ananassa HOM05D006224 ORTHO05D007691 1.9e-132 476.5 345 68.1
EL10Ac8g18541 Beta vulgaris HOM05D006224 ORTHO05D007691 7.4e-132 474.6 385 61.6
Medtr6g086510 Medicago truncatula HOM05D006224 ORTHO05D007691 7.4e-132 474.6 369 65.9
Nitab4.5_0013433g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 2.8e-131 472.6 329 69.3
PGR042G0994 Punica granatum HOM05D006224 ORTHO05D007691 2.8e-131 472.6 404 59.7
Ca_30117_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 8.2e-131 471.1 349 67.0
MBI06_g04550_MAGBIO Magnolia biondii HOM05D006224 ORTHO05D007691 4.1e-130 468.8 401 59.1
Sc08g0007140 Simmondsia chinensis HOM05D006224 ORTHO05D007691 4.1e-130 468.8 342 68.1
Oeu060631.1 Olea europaea HOM05D006224 ORTHO05D007691 1.0e-128 464.2 355 64.5
Nitab4.5_0002361g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 1.7e-128 463.4 384 61.7
Aa31LG11G5060 Aethionema arabicum HOM05D006224 ORTHO05D007691 6.5e-128 461.5 329 66.6
CSS0033373 Camellia sinensis var. sinensis HOM05D006224 ORTHO05D007691 6.5e-128 461.5 386 62.7
Thhalv10013889m.g Eutrema salsugineum HOM05D006224 ORTHO05D007691 1.4e-127 460.3 322 68.0
SalBow1G0968 Salvia bowleyana HOM05D006224 ORTHO05D007691 1.4e-127 460.3 347 62.0
Aqoxy5G03788 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 3.2e-127 459.1 345 63.8
AL6G30950 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 3.6e-126 455.7 330 66.4
FAN26G3318 Fragaria x ananassa HOM05D006224 ORTHO05D007691 4.6e-126 455.3 395 61.5
AT5G19460 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 1.8e-125 453.4 347 63.4
Peaxi162Scf00560g00629 Petunia axillaris HOM05D006224 ORTHO05D007691 6.7e-125 451.4 372 61.3
Carub.0006s1780 Capsella rubella HOM05D006224 ORTHO05D007691 1.1e-124 450.7 361 60.9
ATR0037G051 Amborella trichopoda HOM05D006224 ORTHO05D007691 1.5e-124 450.3 318 64.8
Zm00001eb309830 Zea mays HOM05D006224 ORTHO05D007691 2.0e-124 449.9 318 66.7
BolC9t58538H Brassica oleracea HOM05D006224 ORTHO05D007691 5.7e-124 448.4 370 61.6
Psat1g037920 Pisum sativum HOM05D006224 ORTHO05D007691 5.7e-124 448.4 299 72.2
HPP92_009101 Vanilla planifolia HOM05D006224 ORTHO05D007691 5.3e-122 441.8 343 62.4
Sp6g24950 Schrenkiella parvula HOM05D006224 ORTHO05D007691 7.7e-121 438.0 364 61.3
Sabra06G0124600 Salix brachista HOM05D006224 ORTHO05D007691 1.1e-119 434.1 318 67.3
CAN.G929.19 Capsicum annuum HOM05D006224 ORTHO05D007691 1.4e-119 433.7 272 74.6
CDE04G0176 Ceratophyllum demersum HOM05D006224 ORTHO05D007691 2.5e-119 433.0 366 57.7
Ca_25513_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 7.2e-119 431.4 281 73.0
Aqoxy5G03790 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 2.7e-118 429.5 354 59.9
AL6G30960 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 6.7e-117 424.9 342 61.4
ECA236G3755 Erigeron canadensis HOM05D006224 ORTHO05D007691 8.8e-117 424.5 279 72.0
A10p20240 Brassica napus HOM05D006224 ORTHO05D007691 3.3e-116 422.5 363 60.6
AT5G19470 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 9.7e-116 421.0 361 59.8
THA.LOC104799742 Tarenaya hassleriana HOM05D006224 ORTHO05D007691 4.8e-115 418.7 282 69.1
TPR.G31456 Trifolium pratense HOM05D006224 ORTHO05D007691 5.9e-113 411.8 327 63.3
Nn8g39262 Nelumbo nucifera HOM05D006224 ORTHO05D007691 1.9e-111 406.8 383 56.4
C09p56840 Brassica napus HOM05D006224 ORTHO05D007691 1.2e-110 404.1 370 57.6
SGA_v2.0_scaffold23G10152 Striga asiatica HOM05D006224 ORTHO05D007691 1.8e-109 400.2 377 57.3
TPR.G31453 Trifolium pratense HOM05D006224 ORTHO05D007691 4.1e-106 389.0 362 58.3
Potri.006G157800 Populus trichocarpa HOM05D006224 ORTHO05D007691 5.0e-104 382.1 329 59.6
BraA10t44095Z Brassica rapa HOM05D006224 ORTHO05D007691 1.1e-103 380.9 339 58.7
Peaxi162Scf00560g00615 Petunia axillaris HOM05D006224 ORTHO05D007691 6.1e-102 375.2 332 59.0
Lj7A644T17 Lonicera japonica HOM05D006224 ORTHO05D007691 8.3e-99 364.8 403 49.6
Pp3c12_9090 Physcomitrium patens HOM05D006224 ORTHO05D007691 1.8e-98 363.6 298 59.1
Prupe.7G186600 Prunus persica HOM05D006224 ORTHO05D007691 2.3e-93 346.7 283 64.7
Mapoly0084s0007 Marchantia polymorpha HOM05D006224 ORTHO05D007691 2.0e-92 343.6 304 54.9
HanXRQChr05g0139161 Helianthus annuus HOM05D006224 ORTHO05D007691 2.8e-91 339.7 362 52.2
SMO347G0504 Selaginella moellendorffii HOM05D006224 ORTHO05D007691 1.6e-86 323.9 295 53.6
AUR62033400 Chenopodium quinoa HOM05D006224 ORTHO05D007691 8.3e-75 285.0 257 55.6
unitig_748.g7154 Utricularia gibba HOM05D006224 ORTHO05D007691 9.2e-74 281.6 247 57.1
Cre13.g582201 Chlamydomonas reinhardtii HOM05D006224 ORTHO05D007691 3.9e-72 276.2 300 47.3
AagrBONN_evm.TU.Sc2ySwM_228.2202 Anthoceros agrestis HOM05D006224 ORTHO05D007691 3.2e-66 256.5 208 58.7
Pp3c6_16000 Physcomitrium patens HOM05D006224 ORTHO05D007691 1.1e-63 248.1 299 42.1
Pp3c3_27400 Physcomitrium patens HOM05D006224 ORTHO05D007691 2.3e-61 240.4 288 39.6
MCO11G748 Micromonas commoda HOM05D006224 ORTHO05D007691 6.4e-59 232.3 293 43.7
PRCOL_00004258 Prasinoderma coloniale HOM05D006224 ORTHO05D007691 7.1e-50 202.2 296 39.9
CARHR193460 Cardamine hirsuta HOM05D006224 ORTHO05D007691 2.1e-46 190.7 128 71.9
Os09g0322200 Oryza sativa ssp. japonica HOM05D006224 ORTHO05D007691 7.6e-44 182.2 147 58.5
Ah.09g227190 Amaranthus hybridus HOM05D006224 ORTHO05D007691 1.1e-29 135.2 90 70.0
unitig_748.g7155 Utricularia gibba HOM05D006224 ORTHO05D007691 4.5e-28 129.8 84 70.2
Cfa025487 Carpinus fangiana HOM05D006224 ORTHO05D007691 1.7e-27 127.9 199 36.7
SEGI_32758 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 1.8e-21 107.8 70 65.7
MSTRG.26438 Avicennia marina HOM05D006224 ORTHO05D007691 4.1e-13 80.1 109 44.0
SEGI_12041 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 1.1e-10 72.0 68 54.4
vmacro11393 Vaccinium macrocarpon HOM05D003441 ORTHO05D004516 4.6e-09 66.6 42 64.3
SEGI_03040 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 7.4e-07 59.3 74 44.6


User provided reference genes

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