Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 5.9e-138 494.2 248 100.0
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 2.1e-111 406.0 251 83.7
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 1.5e-80 303.5 258 65.9
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 7.1e-59 231.5 230 52.6
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 1.7e-57 226.9 257 48.6
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 5.1e-57 225.3 198 56.1
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.1e-56 224.2 198 55.1
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.1e-56 224.2 198 55.1
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 5.6e-56 221.9 212 51.4
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 5.6e-56 221.9 249 47.8
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 5.6e-56 221.9 189 54.5
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 1.2e-55 220.7 255 47.8
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 8.1e-55 218.0 194 55.2
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 1.1e-54 217.6 198 53.5
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 4.0e-54 215.7 193 53.9
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 6.9e-54 214.9 193 53.9
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 6.9e-54 214.9 222 50.5
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 6.9e-54 214.9 222 50.5
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 9.0e-54 214.5 193 53.9
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 1.2e-53 214.2 193 53.9
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 2.0e-53 213.4 193 53.4
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 2.0e-53 213.4 257 48.2
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 2.0e-53 213.4 193 52.8
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 2.0e-53 213.4 193 52.8
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 4.4e-53 212.2 193 53.4
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 5.8e-53 211.8 196 52.6
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 5.8e-53 211.8 194 53.6
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 5.8e-53 211.8 196 51.5
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 1.3e-52 210.7 193 52.8
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 1.3e-52 210.7 193 52.8
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 1.3e-52 210.7 200 49.5
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 1.7e-52 210.3 193 52.3
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.7e-52 210.3 194 54.6
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 4.9e-52 208.8 193 51.8
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 6.4e-52 208.4 218 48.2
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 8.4e-52 208.0 194 53.1
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 1.4e-51 207.2 211 49.3
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 1.9e-51 206.8 194 50.0
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 4.2e-51 205.7 263 44.1
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 1.2e-50 204.1 193 50.8
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 1.6e-50 203.8 195 51.3
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 2.1e-50 203.4 193 51.8
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 2.1e-50 203.4 198 50.0
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 4.6e-50 202.2 200 48.5
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 4.6e-50 202.2 193 51.8
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 6.0e-50 201.8 194 50.0
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 7.8e-50 201.4 193 49.2
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 7.8e-50 201.4 193 51.8
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 7.8e-50 201.4 193 49.2
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 7.8e-50 201.4 195 49.7
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 7.8e-50 201.4 256 47.3
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 1.0e-49 201.1 193 51.3
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 1.0e-49 201.1 193 51.3
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 1.7e-49 200.3 193 50.8
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 1.7e-49 200.3 193 50.8
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 2.3e-49 199.9 192 48.4
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 3.9e-49 199.1 189 51.3
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 5.1e-49 198.7 239 46.0
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 5.1e-49 198.7 194 48.5
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 6.6e-49 198.4 215 47.4
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 1.1e-48 197.6 193 50.3
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 4.3e-48 195.7 192 47.9
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 5.6e-48 195.3 200 46.5
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 5.6e-48 195.3 194 49.0
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 5.6e-48 195.3 194 49.0
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 9.6e-48 194.5 189 50.3
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 1.3e-47 194.1 194 48.5
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 6.2e-47 191.8 166 55.4
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 2.4e-46 189.9 194 49.0
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 4.0e-46 189.1 190 48.9
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 6.9e-46 188.3 176 51.7
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 3.4e-45 186.0 244 41.8
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 2.2e-44 183.3 198 46.0
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 6.4e-44 181.8 162 53.7
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 5.4e-43 178.7 162 50.6
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 9.3e-43 177.9 196 45.4
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 9.3e-43 177.9 200 43.5
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 9.3e-43 177.9 196 42.9
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 3.0e-41 172.9 200 42.0
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 6.7e-41 171.8 212 40.6
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 1.5e-40 170.6 189 45.0
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 2.5e-40 169.9 185 45.4
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 2.5e-40 169.9 194 42.8
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 3.3e-40 169.5 196 43.9
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 3.3e-40 169.5 226 43.4
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 5.6e-40 168.7 194 42.8
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 5.6e-40 168.7 209 42.6
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 2.1e-39 166.8 201 42.3
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 2.1e-39 166.8 233 41.6
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 3.7e-39 166.0 204 41.7
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 3.7e-39 166.0 146 51.4
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 3.7e-39 166.0 136 53.7
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 4.8e-39 165.6 217 39.6
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 4.8e-39 165.6 198 40.9
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 6.2e-39 165.2 145 52.4
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 8.1e-39 164.9 219 42.9
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 1.1e-38 164.5 145 51.0
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 1.1e-38 164.5 196 38.8
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 2.4e-38 163.3 196 39.3
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 3.1e-38 162.9 196 38.8
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 3.1e-38 162.9 220 41.4
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 5.3e-38 162.2 188 43.6
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 6.9e-38 161.8 146 52.7
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 6.9e-38 161.8 206 40.8
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 9.0e-38 161.4 216 37.0
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 9.0e-38 161.4 226 36.7
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 9.0e-38 161.4 202 40.1
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 2.0e-37 160.2 213 39.4
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 2.6e-37 159.8 206 40.3
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 4.5e-37 159.1 241 39.4
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 2.9e-36 156.4 218 38.1
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 4.9e-36 155.6 184 41.8
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 6.4e-36 155.2 194 43.8
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 6.4e-36 155.2 239 39.3
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 8.4e-36 154.8 240 38.8
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 8.4e-36 154.8 213 36.2
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 1.1e-35 154.5 184 44.6
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 1.1e-35 154.5 204 42.6
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 3.2e-35 152.9 190 42.1
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 4.6e-34 149.1 241 36.9
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 4.6e-34 149.1 191 39.3
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 1.0e-33 147.9 212 38.7
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 5.1e-33 145.6 189 38.1
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 1.1e-32 144.4 136 48.5
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 1.1e-32 144.4 194 41.8
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 4.3e-32 142.5 194 40.7
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 4.3e-32 142.5 198 39.9
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 7.4e-32 141.7 240 37.1
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 2.8e-31 139.8 201 38.8
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 8.2e-31 138.3 223 40.4
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 1.1e-30 137.9 198 37.9
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 1.8e-30 137.1 244 36.1
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 4.0e-30 136.0 223 37.7
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 2.0e-29 133.7 186 41.9
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 3.4e-29 132.9 220 34.5
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 7.6e-29 131.7 154 42.2
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 4.9e-28 129.0 248 32.7
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.4e-27 127.5 221 36.7
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 9.3e-27 124.8 200 33.5
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 4.6e-26 122.5 157 38.9
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.8e-25 120.6 239 36.4
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 9.7e-24 114.8 237 33.3
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 2.2e-23 113.6 101 54.5
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 1.4e-22 110.9 165 36.4
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 1.3e-20 104.4 198 32.3
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 1.3e-20 104.4 167 35.9
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 2.5e-19 100.1 192 32.8
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 2.1e-18 97.1 130 41.5
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 2.3e-17 93.6 136 39.7
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 3.0e-17 93.2 136 39.7
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 8.8e-17 91.7 198 30.3
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 3.3e-16 89.7 95 40.0
MELO3C009848.2 Cucumis melo HOM05D004214 ORTHO05D004963 5.7e-16 89.0 168 34.5
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 8.2e-15 85.1 100 45.0
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 1.4e-14 84.3 171 28.1
PRCOL_00004285 Prasinoderma coloniale HOM05D004214 ORTHO05D004963 7.2e-11 72.0 182 28.0
C06p18570 Brassica napus HOM05D004214 ORTHO05D004963 7.4e-08 62.0 82 41.5
BolC9t55376H Brassica oleracea HOM05D004214 ORTHO05D004963 2.4e-06 57.0 67 43.3


User provided reference genes

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