Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 2.3e-145 518.8 256 100.0
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 8.0e-82 307.8 258 65.9
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 2.5e-67 259.6 377 45.9
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 7.3e-67 258.1 256 52.3
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 4.0e-65 252.3 198 61.6
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 6.8e-65 251.5 258 52.7
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 1.5e-64 250.4 193 60.6
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 2.6e-64 249.6 263 51.3
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 1.7e-63 246.9 240 53.3
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 1.7e-63 246.9 240 53.3
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 4.9e-63 245.4 256 52.3
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 1.9e-62 243.4 196 59.2
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.9e-62 243.4 198 58.1
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.9e-62 243.4 198 58.1
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 1.9e-62 243.4 227 54.2
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 1.9e-62 243.4 227 54.2
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 3.2e-62 242.7 196 58.2
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 5.4e-62 241.9 255 49.0
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.2e-61 240.7 258 48.1
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 4.6e-61 238.8 224 55.4
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 6.0e-61 238.4 198 56.6
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 2.3e-60 236.5 235 52.3
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 5.1e-60 235.3 198 55.6
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 6.6e-60 235.0 196 57.1
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 1.5e-59 233.8 198 55.6
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 1.5e-59 233.8 198 55.1
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 2.5e-59 233.0 216 55.6
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 3.3e-59 232.6 198 55.1
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 3.3e-59 232.6 198 55.6
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 3.3e-59 232.6 198 55.6
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 3.3e-59 232.6 254 49.6
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 4.3e-59 232.3 198 55.1
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 4.3e-59 232.3 255 47.5
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 4.3e-59 232.3 207 55.1
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 5.6e-59 231.9 264 47.3
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 7.3e-59 231.5 198 55.6
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 3.6e-58 229.2 207 51.7
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 8.1e-58 228.0 192 57.3
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 1.4e-57 227.3 252 46.8
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 4.0e-57 225.7 196 57.1
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 8.9e-57 224.6 196 54.6
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 8.9e-57 224.6 219 51.6
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 3.4e-56 222.6 195 54.9
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 9.9e-56 221.1 238 47.9
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 1.3e-55 220.7 208 51.4
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 1.7e-55 220.3 194 53.6
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 2.9e-55 219.5 196 54.6
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 1.1e-54 217.6 195 53.3
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 3.2e-54 216.1 193 53.4
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 3.2e-54 216.1 196 51.5
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 3.2e-54 216.1 196 51.5
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 4.2e-54 215.7 194 54.1
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 5.4e-54 215.3 193 53.4
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 5.4e-54 215.3 193 53.4
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 7.1e-54 214.9 194 52.1
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 9.2e-54 214.5 193 53.4
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 1.2e-53 214.2 193 52.8
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 1.2e-53 214.2 189 53.4
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 1.2e-53 214.2 196 52.6
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 2.1e-53 213.4 219 49.3
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 7.8e-53 211.5 193 51.3
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 1.0e-52 211.1 198 50.5
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 3.0e-52 209.5 198 50.0
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 3.0e-52 209.5 198 50.0
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 3.0e-52 209.5 279 43.4
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 8.7e-52 208.0 212 48.1
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.1e-51 207.6 176 54.5
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 1.5e-51 207.2 207 49.8
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 1.9e-51 206.8 205 49.3
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 5.6e-51 205.3 215 49.8
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 7.3e-51 204.9 258 46.1
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 2.4e-49 199.9 190 52.1
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 3.1e-49 199.5 215 46.5
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 9.0e-49 198.0 196 49.0
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 2.0e-48 196.8 197 49.7
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 3.4e-48 196.1 226 46.0
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 1.3e-47 194.1 261 44.8
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 1.7e-47 193.7 176 51.7
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 3.8e-47 192.6 197 47.7
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 4.9e-47 192.2 174 52.3
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 6.4e-47 191.8 206 47.6
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 7.1e-46 188.3 206 46.1
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 1.6e-45 187.2 206 47.1
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 2.1e-45 186.8 176 55.1
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 1.7e-44 183.7 254 40.2
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 3.9e-44 182.6 206 45.6
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 1.5e-43 180.6 157 52.9
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 3.3e-43 179.5 207 44.0
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 7.3e-43 178.3 191 46.1
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 7.3e-43 178.3 247 43.7
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 1.6e-42 177.2 196 43.4
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 1.6e-42 177.2 199 43.7
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 2.1e-42 176.8 211 42.7
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 4.8e-42 175.6 196 43.4
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 4.8e-42 175.6 192 42.7
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 6.2e-42 175.3 212 44.8
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 6.2e-42 175.3 202 46.0
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 6.2e-42 175.3 177 51.4
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 6.2e-42 175.3 221 40.7
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.8e-41 173.7 245 43.7
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 2.4e-41 173.3 252 39.7
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 3.1e-41 172.9 245 42.4
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 3.1e-41 172.9 246 41.9
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 4.0e-41 172.6 219 42.9
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 2.0e-40 170.2 201 42.8
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 4.5e-40 169.1 195 45.1
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 7.6e-40 168.3 201 41.3
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.7e-39 167.2 247 42.9
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 2.2e-39 166.8 193 46.1
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 2.2e-39 166.8 198 41.4
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 2.9e-39 166.4 201 42.3
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 3.8e-39 166.0 220 38.6
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 4.9e-39 165.6 223 38.6
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 8.4e-39 164.9 194 45.4
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 1.1e-38 164.5 223 39.5
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 3.2e-38 162.9 197 39.1
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 5.4e-38 162.2 147 52.4
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 5.4e-38 162.2 222 42.8
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 1.2e-37 161.0 147 51.7
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 2.1e-37 160.2 191 38.7
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 3.5e-37 159.5 234 39.7
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 4.6e-37 159.1 237 40.1
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 7.9e-37 158.3 198 42.4
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 7.9e-37 158.3 190 40.0
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 1.0e-36 157.9 155 45.8
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 3.0e-36 156.4 222 44.1
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 1.9e-35 153.7 140 53.6
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 2.1e-34 150.2 198 40.4
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 4.8e-34 149.1 141 46.8
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 4.8e-34 149.1 223 37.7
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 8.1e-34 148.3 196 38.8
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 4.0e-33 146.0 177 44.1
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 4.0e-33 146.0 198 38.9
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 2.6e-32 143.3 232 37.5
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 4.5e-32 142.5 140 50.0
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 9.9e-32 141.4 198 40.4
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 1.7e-31 140.6 157 47.1
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 3.8e-31 139.4 244 37.3
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 7.1e-30 135.2 204 35.3
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 2.7e-29 133.3 211 39.8
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.8e-28 130.6 184 41.3
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 5.6e-27 125.6 211 32.7
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 3.1e-25 119.8 198 35.4
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 3.4e-24 116.3 101 52.5
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 4.5e-24 115.9 101 52.5
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.3e-23 114.4 241 33.6
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 1.7e-23 114.0 198 34.8
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 3.8e-23 112.8 164 37.8
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 9.3e-22 108.2 181 35.4
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 1.0e-20 104.8 87 55.2
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 2.5e-19 100.1 200 28.5
MELO3C009848.2 Cucumis melo HOM05D004214 ORTHO05D004963 9.7e-19 98.2 151 34.4
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 3.7e-18 96.3 98 43.9
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 9.0e-17 91.7 149 32.9
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 6.1e-13 79.0 207 27.5
C06p18570 Brassica napus HOM05D004214 ORTHO05D004963 3.3e-11 73.2 82 42.7
PRCOL_00004285 Prasinoderma coloniale HOM05D004214 ORTHO05D004963 4.3e-11 72.8 180 26.1
Sabra17G0077200 Salix brachista HOM05D004214 ORTHO05D004963 3.4e-08 63.2 82 51.2
BraA07t29702Z Brassica rapa HOM05D004214 ORTHO05D004963 1.3e-07 61.2 73 41.1
BolC9t55376H Brassica oleracea HOM05D004214 ORTHO05D004963 2.2e-07 60.5 72 43.1
Aa31LG9G16510 Aethionema arabicum HOM05D004214 ORTHO05D004963 3.8e-07 59.7 54 50.0
Lj3A364T22 Lonicera japonica HOM05D004214 ORTHO05D004963 1.4e-06 57.8 74 43.2


User provided reference genes

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