Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p081725 Quercus lobata HOM05D017261 ORTHO05D015793 7.2e-56 220.3 109 100.0
QL05p072009 Quercus lobata HOM05D000570 ORTHO05D001174 3.7e-28 128.3 78 83.3
CSS0035071 Camellia sinensis var. sinensis HOM05D017261 ORTHO05D015793 1.6e-18 96.3 75 66.7
CSS0047509 Camellia sinensis var. sinensis HOM05D017261 ORTHO05D015793 2.7e-18 95.5 75 66.7
Atru.chr10.2275 Acer truncatum HOM05D000570 ORTHO05D001174 4.5e-18 94.7 92 60.9
CSS0005489 Camellia sinensis var. sinensis HOM05D000570 ORTHO05D001174 5.0e-17 91.3 92 57.6
Sabra11G0008000 Salix brachista HOM05D000570 ORTHO05D001174 1.5e-16 89.7 64 68.8
Oeu013830.1 Olea europaea HOM05D000570 ORTHO05D001174 1.2e-15 86.7 91 54.9
Duzib235G1179 Durio zibethinus HOM05D000570 ORTHO05D001174 5.2e-14 81.3 91 54.9
CSS0010138 Camellia sinensis var. sinensis HOM05D000570 ORTHO05D001174 1.3e-12 76.6 79 57.0
GSVIVG01004806001 Vitis vinifera HOM05D000570 ORTHO05D001174 1.7e-12 76.3 94 52.1
CSS0029028 Camellia sinensis var. sinensis HOM05D017261 ORTHO05D015793 2.9e-12 75.5 75 56.0
CSS0050269 Camellia sinensis var. sinensis HOM05D017261 ORTHO05D015793 2.9e-12 75.5 74 56.8
Lalb_Chr15g0087741 Lupinus albus HOM05D000570 ORTHO05D001174 3.7e-12 75.1 55 65.5
Potri.011G010500 Populus trichocarpa HOM05D000570 ORTHO05D001174 3.7e-12 75.1 58 69.0
Thecc.06G227500 Theobroma cacao HOM05D000570 ORTHO05D001174 3.7e-12 75.1 90 48.9
CSS0036493 Camellia sinensis var. sinensis HOM05D017261 ORTHO05D015793 4.9e-12 74.7 75 56.0
COL.COLO4_31827 Corchorus olitorius HOM05D000570 ORTHO05D001174 4.9e-12 74.7 90 47.8
Hund21434 Selenicereus undatus HOM05D000570 ORTHO05D001174 4.9e-12 74.7 84 50.0
CSS0037529 Camellia sinensis var. sinensis HOM05D017261 ORTHO05D015793 6.4e-12 74.3 75 54.7
Lalb_Chr20g0118921 Lupinus albus HOM05D000570 ORTHO05D001174 6.4e-12 74.3 93 52.7
Ciclev10014418m.g Citrus clementina HOM05D000570 ORTHO05D001174 8.3e-12 73.9 62 62.9
CSS0015116 Camellia sinensis var. sinensis HOM05D017261 ORTHO05D015793 1.4e-11 73.2 75 52.0
Thhalv10020162m.g Eutrema salsugineum HOM05D000570 ORTHO05D001174 1.4e-11 73.2 91 47.3
Ah.09g234550 Amaranthus hybridus HOM05D000570 ORTHO05D001174 1.9e-11 72.8 86 45.3
Rhsim02G0105000 Rhododendron simsii HOM05D000570 ORTHO05D001174 1.9e-11 72.8 51 70.6
Manes.16G003200 Manihot esculenta HOM05D000570 ORTHO05D001174 2.4e-11 72.4 93 50.5
MD05G1351900 Malus domestica HOM05D000570 ORTHO05D001174 3.2e-11 72.0 91 50.5
Lsat_1_v5_gn_7_15161 Lactuca sativa HOM05D000570 ORTHO05D001174 5.4e-11 71.2 79 50.6
MD10G1326000 Malus domestica HOM05D000570 ORTHO05D001174 5.4e-11 71.2 93 50.5
Cpa.g.sc152.51 Carica papaya HOM05D000570 ORTHO05D001174 7.0e-11 70.9 88 51.1
PGSC0003DMG400016709 Solanum tuberosum HOM05D000570 ORTHO05D001174 7.0e-11 70.9 84 51.2
ECA236G0302 Erigeron canadensis HOM05D000570 ORTHO05D001174 9.2e-11 70.5 77 46.8
Glyma.15G111600 Glycine max HOM05D000570 ORTHO05D001174 9.2e-11 70.5 91 50.5
Actinidia39260 Actinidia chinensis HOM05D000570 ORTHO05D001174 1.2e-10 70.1 38 81.6
MSTRG.14627 Avicennia marina HOM05D000570 ORTHO05D001174 1.6e-10 69.7 94 47.9
Potri.004G005301 Populus trichocarpa HOM05D000570 ORTHO05D001174 1.6e-10 69.7 91 48.4
CsaV3_1G046110 Cucumis sativus L. HOM05D000570 ORTHO05D001174 2.0e-10 69.3 97 46.4
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 2.0e-10 69.3 83 45.8
Solyc02g081070.4 Solanum lycopersicum HOM05D000570 ORTHO05D001174 2.7e-10 68.9 81 49.4
HanXRQChr15g0470551 Helianthus annuus HOM05D000570 ORTHO05D001174 3.5e-10 68.6 80 47.5
DCAR_024985 Daucus carota HOM05D000570 ORTHO05D001174 4.6e-10 68.2 91 47.3
Gohir.A06G150700 Gossypium hirsutum HOM05D000570 ORTHO05D001174 4.6e-10 68.2 90 51.1
Gorai.010G183400 Gossypium raimondii HOM05D000570 ORTHO05D001174 4.6e-10 68.2 90 51.1
Sp1g40260 Schrenkiella parvula HOM05D000570 ORTHO05D001174 4.6e-10 68.2 62 54.8
CiPaw.10G074100 Carya illinoinensis HOM05D000570 ORTHO05D001174 6.0e-10 67.8 58 63.8
PGR004G0535 Punica granatum HOM05D000570 ORTHO05D001174 6.0e-10 67.8 79 51.9
TPR.G12988 Trifolium pratense HOM05D000570 ORTHO05D001174 6.0e-10 67.8 80 51.2
Gohir.D06G156900 Gossypium hirsutum HOM05D000570 ORTHO05D001174 7.8e-10 67.4 90 51.1
HanXRQChr05g0129311 Helianthus annuus HOM05D000570 ORTHO05D001174 7.8e-10 67.4 77 45.5
Sc05g0009430 Simmondsia chinensis HOM05D000570 ORTHO05D001174 1.0e-09 67.0 79 48.1
CANSAT56G2530 Cannabis sativa HOM05D000570 ORTHO05D001174 1.3e-09 66.6 95 43.2
Nitab4.5_0012576g0010 Nicotiana tabacum HOM05D000570 ORTHO05D001174 1.3e-09 66.6 38 73.7
Phvul.006G146100 Phaseolus vulgaris HOM05D000570 ORTHO05D001174 1.7e-09 66.2 90 47.8
SGA_v2.0_scaffold89G27483 Striga asiatica HOM05D000570 ORTHO05D001174 2.3e-09 65.9 96 40.6
CAN.G1014.44 Capsicum annuum HOM05D000570 ORTHO05D001174 3.0e-09 65.5 79 48.1
Hma1.2p1_0298F.1_g117490 Hydrangea macrophylla HOM05D000570 ORTHO05D001174 3.0e-09 65.5 92 46.7
MBI19_g45795_MAGBIO Magnolia biondii HOM05D000570 ORTHO05D001174 6.6e-09 64.3 126 38.1
Sp3g12640 Schrenkiella parvula HOM05D000570 ORTHO05D001174 8.6e-09 63.9 77 46.8
Sopen02g025740 Solanum pennellii HOM05D000570 ORTHO05D001174 1.1e-08 63.5 88 46.6
ATR0686G143 Amborella trichopoda HOM05D000570 ORTHO05D015793 1.9e-08 62.8 84 39.3
CDE04G0812 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 1.9e-08 62.8 67 47.8
Migut.H01588 Erythranthe guttata HOM05D000570 ORTHO05D001174 1.9e-08 62.8 95 44.2
PSO210G6440 Papaver somniferum HOM05D000570 ORTHO05D001174 1.9e-08 62.8 51 60.8
Sabra04G0002700 Salix brachista HOM05D000570 ORTHO05D001174 1.9e-08 62.8 65 53.8
Carub.0003s1405 Capsella rubella HOM05D000570 ORTHO05D001174 2.5e-08 62.4 89 44.9
THA.LOC104813393 Tarenaya hassleriana HOM05D000570 ORTHO05D001174 3.3e-08 62.0 77 50.6
BcaC05g29092 Brassica carinata HOM05D000570 ORTHO05D001174 4.3e-08 61.6 90 45.6
C05p53010 Brassica napus HOM05D000570 ORTHO05D001174 4.3e-08 61.6 90 45.6
BolC5t33981H Brassica oleracea HOM05D000570 ORTHO05D001174 4.3e-08 61.6 90 45.6
Thhalv10011271m.g Eutrema salsugineum HOM05D000570 ORTHO05D001174 4.3e-08 61.6 57 54.4
CARHR044040 Cardamine hirsuta HOM05D000570 ORTHO05D001174 5.6e-08 61.2 90 45.6
Lj1A1235G87 Lonicera japonica HOM05D000570 ORTHO05D001174 5.6e-08 61.2 80 50.0
Hund23438 Selenicereus undatus HOM05D000570 ORTHO05D001174 5.6e-08 61.2 35 71.4
THA.LOC104810401 Tarenaya hassleriana HOM05D000570 ORTHO05D001174 5.6e-08 61.2 50 58.0
CiPaw.09G097400 Carya illinoinensis HOM05D000570 ORTHO05D001174 7.3e-08 60.8 57 57.9
CDE06G1424 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 7.3e-08 60.8 44 61.4
A08p01420 Brassica napus HOM05D000570 ORTHO05D001174 9.5e-08 60.5 53 60.4
BraA08t32193Z Brassica rapa HOM05D000570 ORTHO05D001174 9.5e-08 60.5 53 60.4
Lj6g0005851 Lotus japonicus HOM05D000570 ORTHO05D001174 1.2e-07 60.1 55 60.0
BcaB07g33305 Brassica carinata HOM05D000570 ORTHO05D001174 1.6e-07 59.7 58 55.2
Os02g0190500 Oryza sativa ssp. japonica HOM05D000570 ORTHO05D001174 1.6e-07 59.7 63 50.8
Os07g0618400 Oryza sativa ssp. japonica HOM05D000570 ORTHO05D001174 1.6e-07 59.7 57 52.6
SGA_v2.0_scaffold49G18250 Striga asiatica HOM05D000570 ORTHO05D001174 1.6e-07 59.7 54 57.4
TAR626G0159 Trochodendron aralioides HOM05D000570 ORTHO05D001174 2.1e-07 59.3 79 45.6
AL1G62430 Arabidopsis lyrata HOM05D000570 ORTHO05D001174 2.8e-07 58.9 92 45.7
BcaB04g17062 Brassica carinata HOM05D000570 ORTHO05D001174 2.8e-07 58.9 53 58.5
Actinidia11872 Actinidia chinensis HOM05D020725 ORTHO05D015793 3.6e-07 58.5 113 36.3
CDE06G2079 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 4.7e-07 58.2 86 40.7
Cc09_g01270 Coffea canephora HOM05D000570 ORTHO05D001174 4.7e-07 58.2 80 43.8
Manes.11G011300 Manihot esculenta HOM05D000570 ORTHO05D001174 4.7e-07 58.2 50 54.0
THA.LOC104812980 Tarenaya hassleriana HOM05D000570 ORTHO05D001174 6.2e-07 57.8 77 51.9
HPP92_010491 Vanilla planifolia HOM05D000570 ORTHO05D001174 6.2e-07 57.8 56 53.6
Carub.0001s4301 Capsella rubella HOM05D000570 ORTHO05D001174 8.0e-07 57.4 67 47.8
BcaB06g25393 Brassica carinata HOM05D000570 ORTHO05D001174 1.1e-06 57.0 78 43.6
Gohir.A10G011100 Gossypium hirsutum HOM05D000570 ORTHO05D001174 1.1e-06 57.0 77 42.9
Sed0024542 Sechium edule HOM05D000570 ORTHO05D001174 1.4e-06 56.6 56 51.8
BcaC08g43552 Brassica carinata HOM05D000570 ORTHO05D001174 2.3e-06 55.8 54 53.7
C06p09520 Brassica napus HOM05D000570 ORTHO05D001174 2.3e-06 55.8 54 53.7
BolC6t36026H Brassica oleracea HOM05D000570 ORTHO05D001174 2.3e-06 55.8 54 53.7
PSO832G2605 Papaver somniferum HOM05D000570 ORTHO05D001174 2.3e-06 55.8 84 42.9
BcaC01g01411 Brassica carinata HOM05D000570 ORTHO05D001174 3.1e-06 55.5 51 58.8
C03p91750 Brassica napus HOM05D000570 ORTHO05D001174 3.1e-06 55.5 51 58.8
BolC3t21496H Brassica oleracea HOM05D000570 ORTHO05D001174 3.1e-06 55.5 51 58.8
CsaV3_3G031130 Cucumis sativus L. HOM05D000570 ORTHO05D001174 4.0e-06 55.1 87 40.2
FvH4_3g01460 Fragaria vesca HOM05D000570 ORTHO05D001174 4.0e-06 55.1 57 57.9
BolC3t12877H Brassica oleracea HOM05D000570 ORTHO05D005344 5.2e-06 54.7 58 43.1
CsaV3_6G003240 Cucumis sativus L. HOM05D000570 ORTHO05D001174 5.2e-06 54.7 58 50.0
Oeu038378.2 Olea europaea HOM05D000003 ORTHO05D001174 5.2e-06 54.7 81 40.7
Hund05695 Selenicereus undatus HOM05D000570 ORTHO05D001174 5.2e-06 54.7 80 45.0
A05p35060 Brassica napus HOM05D000570 ORTHO05D001174 6.8e-06 54.3 67 46.3
BraA05t22319Z Brassica rapa HOM05D000570 ORTHO05D001174 6.8e-06 54.3 67 46.3
AT1G53730 Arabidopsis thaliana HOM05D000570 ORTHO05D001174 8.9e-06 53.9 92 43.5
MELO3C011517.2 Cucumis melo HOM05D000570 ORTHO05D001174 8.9e-06 53.9 41 61.0
Manes.17G027800 Manihot esculenta HOM05D000570 ORTHO05D001174 8.9e-06 53.9 54 50.0
Rhsim08G0251800 Rhododendron simsii HOM05D000570 ORTHO05D001174 8.9e-06 53.9 56 50.0


User provided reference genes

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