Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p076860 Quercus lobata HOM05D000020 ORTHO05D000156 6.1e-42 173.7 86 100.0
QL08p041134 Quercus lobata HOM05D000020 ORTHO05D000156 2.2e-20 102.1 67 77.6
GSVIVG01020664001 Vitis vinifera HOM05D000020 ORTHO05D000156 2.2e-15 85.5 65 64.6
Cfa014697 Carpinus fangiana HOM05D000020 ORTHO05D000156 4.8e-15 84.3 64 65.6
Haze_13318 Corylus avellana HOM05D000020 ORTHO05D000156 1.1e-14 83.2 65 64.6
CANSAT64G1897 Cannabis sativa HOM05D000020 ORTHO05D000156 2.0e-13 79.0 68 64.7
CiPaw.04G130700 Carya illinoinensis HOM05D000020 ORTHO05D000156 2.7e-13 78.6 70 57.1
RcHm_v2.0_Chr2g0128881 Rosa chinensis HOM05D000020 ORTHO05D000156 1.0e-12 76.6 62 61.3
CiPaw.03G184700 Carya illinoinensis HOM05D000020 ORTHO05D000156 1.7e-12 75.9 48 70.8
Aa31LG1G24240 Aethionema arabicum HOM05D000020 ORTHO05D000156 2.9e-12 75.1 61 60.7
FvH4_6g27020 Fragaria vesca HOM05D000020 ORTHO05D000156 5.0e-12 74.3 62 61.3
Ciclev10016863m.g Citrus clementina HOM05D000020 ORTHO05D000156 6.6e-12 73.9 71 56.3
PGR142G2300 Punica granatum HOM05D000020 ORTHO05D000156 6.6e-12 73.9 64 59.4
FAN14G3143 Fragaria x ananassa HOM05D000020 ORTHO05D000156 1.1e-11 73.2 62 61.3
vmacro09232 Vaccinium macrocarpon HOM05D000020 ORTHO05D000156 1.1e-11 73.2 73 54.8
FAN05G5664 Fragaria x ananassa HOM05D000020 ORTHO05D000156 1.5e-11 72.8 62 59.7
Potri.019G091500 Populus trichocarpa HOM05D000020 ORTHO05D000156 1.9e-11 72.4 70 50.0
Sabra19G0104800 Salix brachista HOM05D000020 ORTHO05D000156 1.9e-11 72.4 70 51.4
DCAR_021278 Daucus carota HOM05D000020 ORTHO05D000156 2.5e-11 72.0 63 57.1
FAN02G0456 Fragaria x ananassa HOM05D000020 ORTHO05D000156 2.5e-11 72.0 62 59.7
Manes.13G138200 Manihot esculenta HOM05D000020 ORTHO05D000156 2.5e-11 72.0 62 53.2
BcaNung04386 Brassica carinata HOM05D000020 ORTHO05D000156 4.2e-11 71.2 54 59.3
Gohir.A10G153700 Gossypium hirsutum HOM05D000020 ORTHO05D000156 4.2e-11 71.2 63 60.3
BcaC02g12483 Brassica carinata HOM05D000020 ORTHO05D000156 5.5e-11 70.9 64 50.0
C04p03540 Brassica napus HOM05D000020 ORTHO05D000156 5.5e-11 70.9 64 50.0
Lsat_1_v5_gn_4_28260 Lactuca sativa HOM05D000020 ORTHO05D000156 5.5e-11 70.9 73 50.7
THA.LOC104822816 Tarenaya hassleriana HOM05D000020 ORTHO05D000156 5.5e-11 70.9 38 78.9
VMungo1127G0428 Vigna mungo HOM05D000020 ORTHO05D000156 5.5e-11 70.9 63 58.7
BolC4t21989H Brassica oleracea HOM05D000020 ORTHO05D000156 7.2e-11 70.5 64 50.0
Gohir.D10G112400 Gossypium hirsutum HOM05D000020 ORTHO05D000156 7.2e-11 70.5 63 58.7
Gorai.011G124300 Gossypium raimondii HOM05D000020 ORTHO05D000156 7.2e-11 70.5 63 58.7
Cc05_g08040 Coffea canephora HOM05D000020 ORTHO05D000156 9.5e-11 70.1 68 52.9
FAN09G3719 Fragaria x ananassa HOM05D000441 ORTHO05D000156 9.5e-11 70.1 64 56.2
Peaxi162Scf00189g00129 Petunia axillaris HOM05D000020 ORTHO05D000156 9.5e-11 70.1 64 51.6
SalBow7G0536 Salvia bowleyana HOM05D000020 ORTHO05D000156 9.5e-11 70.1 70 57.1
BraA05t19282Z Brassica rapa HOM05D000020 ORTHO05D000156 1.2e-10 69.7 64 50.0
ECA234G1775 Erigeron canadensis HOM05D000020 ORTHO05D000156 1.2e-10 69.7 53 58.5
Glyma.06G284700 Glycine max HOM05D000020 ORTHO05D000156 1.2e-10 69.7 61 57.4
MD17G1233700 Malus domestica HOM05D000020 ORTHO05D000156 1.2e-10 69.7 63 57.1
Hund07846 Selenicereus undatus HOM05D000020 ORTHO05D000156 1.2e-10 69.7 74 48.6
Actinidia10982 Actinidia chinensis HOM05D000020 ORTHO05D000156 1.6e-10 69.3 38 78.9
arahy.Tifrunner.gnm1.ann1.E9700R Arachis hypogaea HOM05D000020 ORTHO05D000156 1.6e-10 69.3 76 52.6
Hma1.2p1_0002F.1_g002550 Hydrangea macrophylla HOM05D000020 ORTHO05D000156 1.6e-10 69.3 38 76.3
SalBow7G4404 Salvia bowleyana HOM05D000020 ORTHO05D000156 1.6e-10 69.3 70 55.7
Carub.0004s2476 Capsella rubella HOM05D000020 ORTHO05D000156 2.1e-10 68.9 54 57.4
COL.COLO4_29504 Corchorus olitorius HOM05D000020 ORTHO05D000156 2.1e-10 68.9 38 78.9
MD09G1240800 Malus domestica HOM05D000020 ORTHO05D000156 2.1e-10 68.9 66 56.1
Prupe.3G125100 Prunus persica HOM05D000020 ORTHO05D000156 2.1e-10 68.9 61 57.4
HPP92_024034 Vanilla planifolia HOM05D000020 ORTHO05D000156 2.1e-10 68.9 70 50.0
Duzib187G1264 Durio zibethinus HOM05D000020 ORTHO05D000156 2.8e-10 68.6 69 50.7
Actinidia11126 Actinidia chinensis HOM05D000020 ORTHO05D000156 3.6e-10 68.2 65 56.9
Carub.0005s2495 Capsella rubella HOM05D000020 ORTHO05D000156 3.6e-10 68.2 68 51.5
Thhalv10006265m.g Eutrema salsugineum HOM05D000020 ORTHO05D000156 3.6e-10 68.2 61 52.5
CSS0018547 Camellia sinensis var. sinensis HOM05D000020 ORTHO05D000156 4.7e-10 67.8 49 61.2
Manes.12G088176 Manihot esculenta HOM05D000020 ORTHO05D000156 4.7e-10 67.8 71 47.9
Sp5g04620 Schrenkiella parvula HOM05D000020 ORTHO05D000156 4.7e-10 67.8 75 46.7
Sc12g0003350 Simmondsia chinensis HOM05D000020 ORTHO05D000156 4.7e-10 67.8 63 55.6
TAR714G0001 Trochodendron aralioides HOM05D000020 ORTHO05D000156 4.7e-10 67.8 74 48.6
A05p02910 Brassica napus HOM05D000020 ORTHO05D000156 6.1e-10 67.4 64 48.4
Migut.M00188 Erythranthe guttata HOM05D000020 ORTHO05D000156 6.1e-10 67.4 39 71.8
Medtr4g079530 Medicago truncatula HOM05D000020 ORTHO05D000156 6.1e-10 67.4 65 53.8
PSO541G6197 Papaver somniferum HOM05D000020 ORTHO05D000156 6.1e-10 67.4 39 74.4
SalBow7G1999 Salvia bowleyana HOM05D000020 ORTHO05D000156 6.1e-10 67.4 73 47.9
arahy.Tifrunner.gnm1.ann1.AZG461 Arachis hypogaea HOM05D000020 ORTHO05D000156 8.0e-10 67.0 65 55.4
CARHR168450 Cardamine hirsuta HOM05D000020 ORTHO05D000156 8.0e-10 67.0 64 50.0
HanXRQChr16g0526351 Helianthus annuus HOM05D000020 ORTHO05D000156 8.0e-10 67.0 70 50.0
PSO675G1808 Papaver somniferum HOM05D000020 ORTHO05D000156 8.0e-10 67.0 89 46.1
AT3G58100 Arabidopsis thaliana HOM05D000020 ORTHO05D000156 1.0e-09 66.6 78 42.3
Glyma.12G208500 Glycine max HOM05D000020 ORTHO05D000156 1.0e-09 66.6 64 54.7
MBI06_g40466_MAGBIO Magnolia biondii HOM05D000020 ORTHO05D000156 1.0e-09 66.6 45 66.7
MBI06_g46087_MAGBIO Magnolia biondii HOM05D000020 ORTHO05D000156 1.0e-09 66.6 45 66.7
Glyma.12G121200 Glycine max HOM05D000020 ORTHO05D000156 1.4e-09 66.2 74 51.4
Phvul.011G117000 Phaseolus vulgaris HOM05D000020 ORTHO05D000156 1.4e-09 66.2 63 57.1
Psat7g166520 Pisum sativum HOM05D000020 ORTHO05D000156 1.4e-09 66.2 65 53.8
Thecc.01G242100 Theobroma cacao HOM05D000020 ORTHO05D000156 1.4e-09 66.2 65 58.5
BcaB02g07552 Brassica carinata HOM05D000122 ORTHO05D000139 1.8e-09 65.9 60 51.7
Lj3g0016788 Lotus japonicus HOM05D000020 ORTHO05D000156 1.8e-09 65.9 66 54.5
AL5G39790 Arabidopsis lyrata HOM05D000020 ORTHO05D000156 2.3e-09 65.5 38 71.1
EL10Ac9g20858 Beta vulgaris HOM05D000020 ORTHO05D000156 2.3e-09 65.5 39 69.2
Dinv02388 Davidia involucrata HOM05D000020 ORTHO05D000156 2.3e-09 65.5 38 71.1
Eucgr.K01086 Eucalyptus grandis HOM05D000020 ORTHO05D000156 2.3e-09 65.5 38 68.4
Lalb_Chr01g0005931 Lupinus albus HOM05D000020 ORTHO05D000156 2.3e-09 65.5 38 73.7
Sed0009624 Sechium edule HOM05D000020 ORTHO05D000156 2.3e-09 65.5 65 50.8
CAN.G1543.12 Capsicum annuum HOM05D000020 ORTHO05D000156 3.0e-09 65.1 38 71.1
Nitab4.5_0002629g0090 Nicotiana tabacum HOM05D000020 ORTHO05D000156 3.0e-09 65.1 38 71.1
PGSC0003DMG401009389 Solanum tuberosum HOM05D000020 ORTHO05D000156 3.0e-09 65.1 37 75.7
C06p25100 Brassica napus HOM05D000020 ORTHO05D000156 4.0e-09 64.7 59 52.5
BolC6t37669H Brassica oleracea HOM05D000020 ORTHO05D000156 4.0e-09 64.7 59 52.5
AUR62012052 Chenopodium quinoa HOM05D005427 ORTHO05D006461 4.0e-09 64.7 39 69.2
AUR62024068 Chenopodium quinoa HOM05D000020 ORTHO05D000156 4.0e-09 64.7 39 69.2
AUR62043438 Chenopodium quinoa HOM05D000020 ORTHO05D000156 4.0e-09 64.7 70 50.0
Nn1g09021 Nelumbo nucifera HOM05D000020 ORTHO05D000156 4.0e-09 64.7 40 65.0
TPR.G14946 Trifolium pratense HOM05D000020 ORTHO05D000156 4.0e-09 64.7 78 47.4
Atru.chr6.2834 Acer truncatum HOM05D000020 ORTHO05D000156 5.2e-09 64.3 69 50.7
ATR0602G237 Amborella trichopoda HOM05D000020 ORTHO05D000156 5.2e-09 64.3 38 73.7
Lalb_Chr03g0029821 Lupinus albus HOM05D000020 ORTHO05D000156 5.2e-09 64.3 62 51.6
CDE10G0093 Ceratophyllum demersum HOM05D000965 ORTHO05D000842 6.8e-09 63.9 66 48.5
TWI59G0339 Tripterygium wilfordii HOM05D000020 ORTHO05D000156 6.8e-09 63.9 38 71.1
Ca_18899_v3 Cicer arietinum L. HOM05D000020 ORTHO05D000156 8.9e-09 63.5 63 52.4
Nitab4.5_0005186g0010 Nicotiana tabacum HOM05D000020 ORTHO05D000156 8.9e-09 63.5 38 68.4
BcaC08g44895 Brassica carinata HOM05D000020 ORTHO05D000156 1.2e-08 63.2 59 52.5
BraA07t30040Z Brassica rapa HOM05D000020 ORTHO05D000156 1.2e-08 63.2 59 50.8
Cpa.g.sc209.11 Carica papaya HOM05D000020 ORTHO05D000156 1.2e-08 63.2 68 50.0
CsaV3_6G037660 Cucumis sativus L. HOM05D000020 ORTHO05D000156 1.5e-08 62.8 71 49.3
Nitab4.5_0000537g0040 Nicotiana tabacum HOM05D000020 ORTHO05D000156 1.5e-08 62.8 64 46.9
RhsimUnG0244600 Rhododendron simsii HOM05D000020 ORTHO05D000156 1.5e-08 62.8 38 71.1
unitig_46.g18257 Utricularia gibba HOM05D000020 ORTHO05D000156 1.5e-08 62.8 61 47.5
unitig_49.g30748 Utricularia gibba HOM05D000020 ORTHO05D000156 1.5e-08 62.8 61 47.5
MSTRG.15112 Avicennia marina HOM05D000020 ORTHO05D000156 2.0e-08 62.4 61 52.5
MELO3C014428.2 Cucumis melo HOM05D000020 ORTHO05D000156 2.6e-08 62.0 72 48.6
Rhsim04G0072900 Rhododendron simsii HOM05D000020 ORTHO05D000156 2.6e-08 62.0 76 47.4
VMungo1080G1620 Vigna mungo HOM05D000020 ORTHO05D000156 2.6e-08 62.0 72 45.8
Glyma.13G292700 Glycine max HOM05D000020 ORTHO05D000156 3.4e-08 61.6 64 46.9
Zm00001eb383570 Zea mays HOM05D000020 ORTHO05D000156 3.4e-08 61.6 60 55.0
ClCG09G011290 Citrullus lanatus HOM05D000020 ORTHO05D000156 4.4e-08 61.2 37 70.3
Os06g0537700 Oryza sativa ssp. japonica HOM05D000020 ORTHO05D000156 4.4e-08 61.2 40 67.5
RhsimUnG0244700 Rhododendron simsii HOM05D000020 ORTHO05D000156 4.4e-08 61.2 38 71.1
Nitab4.5_0009096g0020 Nicotiana tabacum HOM05D000020 ORTHO05D000156 5.7e-08 60.8 38 65.8
Phvul.005G097600 Phaseolus vulgaris HOM05D000020 ORTHO05D000156 7.5e-08 60.5 39 61.5
ClCG03G006410 Citrullus lanatus HOM05D000020 ORTHO05D000156 1.7e-07 59.3 57 47.4
unitig_26.g9770 Utricularia gibba HOM05D000020 ORTHO05D000156 6.3e-07 57.4 46 54.3
Cc02_g35770 Coffea canephora HOM05D000020 ORTHO05D000156 8.3e-07 57.0 35 71.4
PGR031G1851 Punica granatum HOM05D000020 ORTHO05D000156 8.3e-07 57.0 47 53.2
Sabra13G0100900 Salix brachista HOM05D000020 ORTHO05D000156 8.3e-07 57.0 72 41.7
LjContig00081g0019022 Lotus japonicus HOM05D000020 ORTHO05D000156 1.1e-06 56.6 61 49.2
arahy.Tifrunner.gnm1.ann1.DP3R7M Arachis hypogaea HOM05D000020 ORTHO05D010249 1.4e-06 56.2 39 64.1
Potri.013G119500 Populus trichocarpa HOM05D000020 ORTHO05D000156 1.4e-06 56.2 62 43.5
Glyma.02G306000 Glycine max HOM05D000020 ORTHO05D000156 2.4e-06 55.5 74 44.6
Sopen01g044570 Solanum pennellii HOM05D000020 ORTHO05D000156 3.1e-06 55.1 39 66.7
Solyc01g101120.4 Solanum lycopersicum HOM05D000020 ORTHO05D000156 4.1e-06 54.7 39 64.1
ATR0796G200 Amborella trichopoda HOM05D000020 ORTHO05D000156 5.4e-06 54.3 35 68.6
Manes.06G061200 Manihot esculenta HOM05D000020 ORTHO05D000156 5.4e-06 54.3 46 54.3
PGSC0003DMG400023031 Solanum tuberosum HOM05D000020 ORTHO05D000156 5.4e-06 54.3 47 51.1
HPP92_018698 Vanilla planifolia HOM05D000020 ORTHO05D000156 5.4e-06 54.3 47 48.9
VMungo0251G3459 Vigna mungo HOM05D008589 ORTHO05D010715 5.4e-06 54.3 47 48.9
CAN.G1248.25 Capsicum annuum HOM05D000020 ORTHO05D000156 7.0e-06 53.9 39 66.7
Sabra19G0024600 Salix brachista HOM05D000020 ORTHO05D000156 7.0e-06 53.9 46 52.2
Solyc04g058080.3 Solanum lycopersicum HOM05D000020 ORTHO05D000156 7.0e-06 53.9 47 51.1
Sopen04g025930 Solanum pennellii HOM05D000020 ORTHO05D000156 7.0e-06 53.9 47 51.1
Aqoxy1G02197 Aquilegia oxysepala HOM05D000020 ORTHO05D000156 9.2e-06 53.5 36 61.1
Cpa.g.sc48.219 Carica papaya HOM05D000020 ORTHO05D000156 9.2e-06 53.5 57 45.6
Medtr8g089400 Medicago truncatula HOM05D000020 ORTHO05D000156 9.2e-06 53.5 47 48.9
Nitab4.5_0002557g0040 Nicotiana tabacum HOM05D000020 ORTHO05D000156 9.2e-06 53.5 47 51.1
PGSC0003DMG400018289 Solanum tuberosum HOM05D000020 ORTHO05D000156 9.2e-06 53.5 39 64.1
TAR636G0148 Trochodendron aralioides HOM05D000020 ORTHO05D010249 9.2e-06 53.5 47 53.2


User provided reference genes

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