Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p076349 Quercus lobata HOM05D001104 ORTHO05D006624 1.2e-255 885.9 426 100.0
Haze_14675 Corylus avellana HOM05D001104 ORTHO05D006624 1.2e-207 726.5 417 84.4
CiPaw.03G038600 Carya illinoinensis HOM05D001104 ORTHO05D006624 8.6e-206 720.3 424 82.3
Cpa.g.sc215.8 Carica papaya HOM05D001104 ORTHO05D006624 3.1e-203 711.8 418 80.4
Dinv35069 Davidia involucrata HOM05D001104 ORTHO05D006624 1.2e-202 709.9 427 79.9
TWI12G0063 Tripterygium wilfordii HOM05D001104 ORTHO05D006624 3.2e-200 701.8 423 78.5
Sed0005946 Sechium edule HOM05D001104 ORTHO05D006624 5.4e-200 701.0 424 78.8
Potri.001G348700 Populus trichocarpa HOM05D001104 ORTHO05D006624 1.6e-199 699.5 419 79.5
CsaV3_5G027380 Cucumis sativus L. HOM05D001104 ORTHO05D006624 2.1e-199 699.1 426 78.4
Rhsim10G0021500 Rhododendron simsii HOM05D001104 ORTHO05D006624 2.7e-199 698.7 427 78.2
Atru.chr6.2305 Acer truncatum HOM05D001104 ORTHO05D006624 3.5e-199 698.4 423 78.3
MELO3C021546.2 Cucumis melo HOM05D001104 ORTHO05D006624 3.5e-199 698.4 426 78.6
Dinv33487 Davidia involucrata HOM05D001104 ORTHO05D006624 3.5e-199 698.4 424 79.2
CSS0039746 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 7.8e-199 697.2 427 78.5
Ciclev10015353m.g Citrus clementina HOM05D001104 ORTHO05D006624 1.3e-198 696.4 423 77.1
Hma1.2p1_0993F.1_g245480 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 5.1e-198 694.5 427 78.2
Actinidia06020 Actinidia chinensis HOM05D001104 ORTHO05D006624 2.5e-197 692.2 430 77.7
TAR374G1405 Trochodendron aralioides HOM05D001104 ORTHO05D006624 4.3e-197 691.4 423 78.0
CSS0024274 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 2.1e-196 689.1 431 77.5
Prupe.3G285400 Prunus persica HOM05D001104 ORTHO05D006624 2.1e-196 689.1 427 76.8
Thecc.04G010000 Theobroma cacao HOM05D001104 ORTHO05D006624 1.1e-195 686.8 423 77.3
Cc07_g02180 Coffea canephora HOM05D001104 ORTHO05D006624 2.4e-195 685.6 427 77.5
Actinidia35743 Actinidia chinensis HOM05D001104 ORTHO05D006624 4.4e-194 681.4 427 76.6
Nitab4.5_0001709g0040 Nicotiana tabacum HOM05D001104 ORTHO05D006624 1.3e-193 679.9 417 77.5
CAN.G973.9 Capsicum annuum HOM05D001104 ORTHO05D006624 8.4e-193 677.2 417 77.2
MD17G1034200 Malus domestica HOM05D001104 ORTHO05D006624 1.9e-192 676.0 444 72.5
Eucgr.I01793 Eucalyptus grandis HOM05D001104 ORTHO05D006624 1.2e-191 673.3 427 75.6
Oeu062922.1 Olea europaea HOM05D001104 ORTHO05D006624 1.2e-191 673.3 418 75.8
Duzib147G0036 Durio zibethinus HOM05D001104 ORTHO05D006624 4.6e-191 671.4 428 74.8
PGSC0003DMG400006955 Solanum tuberosum HOM05D001104 ORTHO05D006624 7.8e-191 670.6 418 77.5
Solyc02g067740.4 Solanum lycopersicum HOM05D001104 ORTHO05D006624 1.0e-190 670.2 418 77.0
Sopen02g016860 Solanum pennellii HOM05D001104 ORTHO05D006624 8.7e-190 667.2 418 76.8
Cfa007422 Carpinus fangiana HOM05D001104 ORTHO05D006624 3.3e-189 665.2 383 84.1
Migut.H00115 Erythranthe guttata HOM05D001104 ORTHO05D006624 2.1e-188 662.5 411 76.9
MSTRG.15512 Avicennia marina HOM05D001104 ORTHO05D006624 3.6e-188 661.8 426 73.7
GSVIVG01032469001 Vitis vinifera HOM05D001104 ORTHO05D006624 8.1e-188 660.6 427 74.7
Nn4g22776 Nelumbo nucifera HOM05D001104 ORTHO05D006624 1.5e-186 656.4 423 72.8
vmacro05831 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 2.0e-186 656.0 435 73.6
CANSAT64G0855 Cannabis sativa HOM05D001104 ORTHO05D006624 1.7e-185 652.9 423 74.0
RcHm_v2.0_Chr2g0171701 Rosa chinensis HOM05D001104 ORTHO05D006624 8.4e-185 650.6 433 72.1
COL.COLO4_28978 Corchorus olitorius HOM05D001104 ORTHO05D006624 1.4e-184 649.8 448 71.7
Gorai.001G262300 Gossypium raimondii HOM05D001104 ORTHO05D006624 1.9e-184 649.4 428 72.0
arahy.Tifrunner.gnm1.ann1.PA6DSG Arachis hypogaea HOM05D001104 ORTHO05D006624 3.2e-184 648.7 429 72.3
Medtr6g007040 Medicago truncatula HOM05D001104 ORTHO05D006624 5.4e-184 647.9 431 71.5
Gohir.A07G220700 Gossypium hirsutum HOM05D001104 ORTHO05D006624 2.3e-182 642.5 428 71.3
FAN14G0697 Fragaria x ananassa HOM05D001104 ORTHO05D006624 8.7e-182 640.6 444 70.3
Lj7C592G4 Lonicera japonica HOM05D001104 ORTHO05D006624 8.7e-182 640.6 418 74.2
FvH4_6g50760 Fragaria vesca HOM05D001104 ORTHO05D006624 1.1e-181 640.2 444 70.3
FAN05G2035 Fragaria x ananassa HOM05D001104 ORTHO05D006624 1.5e-181 639.8 444 70.0
ClCG09G018970 Citrullus lanatus HOM05D001104 ORTHO05D006624 1.9e-181 639.4 471 66.9
Phvul.004G013700 Phaseolus vulgaris HOM05D001104 ORTHO05D006624 7.4e-181 637.5 428 71.7
SalBow1G5303 Salvia bowleyana HOM05D001104 ORTHO05D006624 9.6e-181 637.1 412 72.6
ECA232G2826 Erigeron canadensis HOM05D001104 ORTHO05D006624 6.2e-180 634.4 416 72.6
MD09G1032600 Malus domestica HOM05D001104 ORTHO05D006624 6.2e-180 634.4 445 69.7
HanXRQChr14g0450311 Helianthus annuus HOM05D001104 ORTHO05D006624 8.1e-180 634.0 423 70.4
VMungo0464G0407 Vigna mungo HOM05D001104 ORTHO05D006624 1.8e-179 632.9 427 69.8
arahy.Tifrunner.gnm1.ann1.S5BZSG Arachis hypogaea HOM05D001104 ORTHO05D006624 1.5e-178 629.8 449 68.4
PSO478G3469 Papaver somniferum HOM05D001104 ORTHO05D006624 1.5e-178 629.8 428 71.7
PGR142G0881 Punica granatum HOM05D001104 ORTHO05D006624 1.5e-178 629.8 434 70.7
Peaxi162Scf00933g00005 Petunia axillaris HOM05D001104 ORTHO05D006624 7.6e-178 627.5 393 76.3
THA.LOC104825337 Tarenaya hassleriana HOM05D001104 ORTHO05D006624 1.3e-177 626.7 426 70.4
Glyma.19G007900 Glycine max HOM05D001104 ORTHO05D006624 2.9e-177 625.5 430 70.7
ECA238G2799 Erigeron canadensis HOM05D001104 ORTHO05D006624 6.4e-177 624.4 415 69.9
Hma1.2p1_3249F.1_g334430 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 8.4e-177 624.0 395 75.7
Aqoxy3G01030 Aquilegia oxysepala HOM05D001104 ORTHO05D006624 4.2e-176 621.7 419 71.8
HanXRQChr09g0266171 Helianthus annuus HOM05D001104 ORTHO05D006624 7.4e-173 610.9 412 70.9
Sp2g16980 Schrenkiella parvula HOM05D001104 ORTHO05D006624 2.8e-172 609.0 425 70.1
BcaC06g30950 Brassica carinata HOM05D001104 ORTHO05D006624 3.7e-172 608.6 426 69.7
BcaC06g33770 Brassica carinata HOM05D001104 ORTHO05D006624 3.7e-172 608.6 425 69.9
C07p37130 Brassica napus HOM05D001104 ORTHO05D006624 3.7e-172 608.6 425 69.9
Thhalv10004293m.g Eutrema salsugineum HOM05D001104 ORTHO05D006624 2.4e-171 605.9 424 70.5
Ca_04192_v3 Cicer arietinum L. HOM05D001104 ORTHO05D006624 3.4e-170 602.1 427 67.7
DCAR_011201 Daucus carota HOM05D001104 ORTHO05D006624 1.0e-169 600.5 396 73.5
Lalb_Chr06g0176011 Lupinus albus HOM05D001104 ORTHO05D006624 2.2e-169 599.4 433 65.8
PSO017G6424 Papaver somniferum HOM05D001104 ORTHO05D006624 6.5e-169 597.8 428 68.9
Gohir.D07G227400 Gossypium hirsutum HOM05D001104 ORTHO05D006624 1.4e-168 596.7 395 71.4
Lj2g0012499 Lotus japonicus HOM05D001104 ORTHO05D006624 9.3e-168 594.0 428 67.3
AL5G17430 Arabidopsis lyrata HOM05D001104 ORTHO05D006624 5.1e-166 588.2 419 68.0
MBI16_g05636_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006624 1.5e-165 586.6 394 70.6
Lsat_1_v5_gn_4_182480 Lactuca sativa HOM05D001104 ORTHO05D006624 4.3e-165 585.1 417 69.3
Carub.0005s0650 Capsella rubella HOM05D001104 ORTHO05D006624 1.6e-164 583.2 419 67.3
ATR0730G148 Amborella trichopoda HOM05D001104 ORTHO05D006624 1.4e-163 580.1 428 64.7
AT3G27930 Arabidopsis thaliana HOM05D001104 ORTHO05D006624 1.4e-163 580.1 419 67.8
DCAR_015045 Daucus carota HOM05D001104 ORTHO05D006624 6.9e-163 577.8 472 62.1
CARHR149500 Cardamine hirsuta HOM05D001104 ORTHO05D006624 1.0e-161 573.9 428 65.2
FAN02G3192 Fragaria x ananassa HOM05D001104 ORTHO05D006624 5.0e-161 571.6 499 59.5
EL10Ac4g08579 Beta vulgaris HOM05D001104 ORTHO05D006624 5.5e-160 568.2 424 65.1
SGA_v2.0_scaffold135G34875 Striga asiatica HOM05D001104 ORTHO05D006624 1.0e-158 563.9 355 75.5
CSS0016338 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 2.0e-154 549.7 455 64.2
Aa31LG2G4840 Aethionema arabicum HOM05D001104 ORTHO05D006285 4.2e-152 542.0 382 69.1
Sc03g0007930 Simmondsia chinensis HOM05D001104 ORTHO05D006624 4.7e-151 538.5 338 75.1
Manes.17G117000 Manihot esculenta HOM05D001104 ORTHO05D006624 1.3e-148 530.4 418 64.4
Os05g0577800 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 1.1e-147 527.3 420 59.8
CDE06G1183 Ceratophyllum demersum HOM05D001104 ORTHO05D006624 3.8e-145 518.8 424 59.9
vmacro18250 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 4.1e-139 498.8 427 60.7
Oeu043054.1 Olea europaea HOM05D001104 ORTHO05D006285 5.3e-139 498.4 386 64.5
HPP92_024321 Vanilla planifolia HOM05D001104 ORTHO05D006285 4.5e-138 495.4 372 63.4
Nitab4.5_0001125g0070 Nicotiana tabacum HOM05D001104 ORTHO05D006624 2.9e-137 492.7 422 61.1
CSS0012459 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 1.2e-133 480.7 434 59.9
BcaC03g17495 Brassica carinata HOM05D001104 ORTHO05D006624 5.9e-130 468.4 405 59.8
Psat1g057160 Pisum sativum HOM05D001104 ORTHO05D006624 9.8e-125 451.1 303 71.0
unitig_899.g15491 Utricularia gibba HOM05D000928 ORTHO05D001186 5.0e-121 438.7 403 56.6
AUR62029365 Chenopodium quinoa HOM05D001104 ORTHO05D006624 3.4e-117 426.0 421 53.0
BolC7t44224H Brassica oleracea HOM05D001104 ORTHO05D006624 2.3e-113 413.3 288 70.1
Os05g0577900 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 2.3e-113 413.3 418 49.5
A06p40770 Brassica napus HOM05D001104 ORTHO05D006624 2.9e-113 412.9 289 70.2
BraA06t26998Z Brassica rapa HOM05D001104 ORTHO05D006624 2.9e-113 412.9 288 70.5
Rhsim08G0054100 Rhododendron simsii HOM05D001104 ORTHO05D006285 2.0e-109 400.2 426 53.5
C02p54520 Brassica napus HOM05D001104 ORTHO05D006624 3.2e-107 392.9 432 50.5
AagrBONN_evm.TU.Sc2ySwM_340.221 Anthoceros agrestis HOM05D001104 ORTHO05D006624 7.8e-106 388.3 427 46.8
AUR62043218 Chenopodium quinoa HOM05D001104 ORTHO05D006624 2.5e-104 383.3 418 49.3
C02p54570 Brassica napus HOM05D001104 ORTHO05D006624 3.3e-104 382.9 453 48.1
Pp3c25_9610 Physcomitrium patens HOM05D001104 ORTHO05D006624 1.2e-95 354.4 430 45.6
BolC2t11515H Brassica oleracea HOM05D001104 ORTHO05D006624 2.4e-91 340.1 632 35.6
HanXRQChr06g0175561 Helianthus annuus HOM05D001104 ORTHO05D006624 4.7e-87 325.9 287 57.1
TPR.G2265 Trifolium pratense HOM05D001104 ORTHO05D006624 2.6e-85 320.1 206 72.8
Zm00001eb344500 Zea mays HOM05D001104 ORTHO05D006624 3.2e-83 313.2 268 57.5
Hund10304 Selenicereus undatus HOM05D001104 ORTHO05D006624 1.7e-81 307.4 264 58.0
A02p35680 Brassica napus HOM05D001104 ORTHO05D006624 2.4e-78 297.0 689 32.1
BolC2t11520H Brassica oleracea HOM05D001104 ORTHO05D006624 4.3e-56 223.0 324 42.9
Cfa008567 Carpinus fangiana HOM05D001104 ORTHO05D006624 9.6e-56 221.9 155 72.9
BraA02t08571Z Brassica rapa HOM05D001104 ORTHO05D006624 2.8e-55 220.3 541 31.2
Psat0s3401g0080 Pisum sativum HOM05D001104 ORTHO05D006624 5.3e-54 216.1 145 71.0
A06p40780 Brassica napus HOM05D001104 ORTHO05D006624 1.0e-44 185.3 121 71.9
SEGI_13753 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 2.3e-41 174.1 150 54.0
BraA02t08570Z Brassica rapa HOM05D001104 ORTHO05D006624 2.5e-40 170.6 107 74.8
Oeu043225.1 Olea europaea HOM05D003428 ORTHO05D006624 1.1e-35 155.2 289 34.9
Oeu051906.1 Olea europaea HOM05D003428 ORTHO05D006624 7.2e-35 152.5 289 34.6
Psat1g219520 Pisum sativum HOM05D001104 ORTHO05D006624 4.8e-31 139.8 90 71.1
Glyma.05G007402 Glycine max HOM05D001104 ORTHO05D006624 1.3e-28 131.7 88 69.3
Actinidia36089 Actinidia chinensis HOM05D001104 ORTHO05D006624 8.8e-25 119.0 69 81.2
Thecc.04G111800 Theobroma cacao HOM05D001104 ORTHO05D006624 1.8e-22 111.3 84 63.1
BcaB07g30139 Brassica carinata HOM05D001104 ORTHO05D006624 1.9e-19 101.3 65 75.4
Cfa008566 Carpinus fangiana HOM05D001104 ORTHO05D006624 2.5e-19 100.9 57 80.7
HanXRQChr16g0517041 Helianthus annuus HOM05D001104 ORTHO05D006624 8.8e-17 92.4 79 57.0
Cre08.g358552 Chlamydomonas reinhardtii HOM05D001104 ORTHO05D006624 9.1e-14 82.4 499 21.8
SEGI_37884 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 3.8e-12 77.0 55 60.0
TPR.G18830 Trifolium pratense HOM05D001104 ORTHO05D006624 1.4e-09 68.6 44 72.7
SEGI_12261 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 1.7e-07 61.6 54 55.6
Sopen07g006450 Solanum pennellii HOM05D001104 ORTHO05D006624 2.8e-07 60.8 43 62.8
Medtr6g007060 Medicago truncatula HOM05D001104 ORTHO05D006624 5.4e-06 56.6 42 52.4


User provided reference genes

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