Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p074723 Quercus lobata HOM05D004871 ORTHO05D005755 4.4e-251 870.9 478 100.0
Haze_14739 Corylus avellana HOM05D004871 ORTHO05D005755 9.1e-204 713.8 475 83.8
Cfa007369 Carpinus fangiana HOM05D004871 ORTHO05D005755 4.2e-201 704.9 476 82.6
CiPaw.03G043700 Carya illinoinensis HOM05D004871 ORTHO05D005755 5.5e-201 704.5 478 78.0
Prupe.3G291600 Prunus persica HOM05D004871 ORTHO05D005755 5.7e-190 667.9 477 75.5
CiPaw.04G028400 Carya illinoinensis HOM05D004871 ORTHO05D005755 1.7e-189 666.4 478 77.0
RcHm_v2.0_Chr2g0172801 Rosa chinensis HOM05D004871 ORTHO05D005755 2.7e-176 622.5 478 70.3
MD17G1027100 Malus domestica HOM05D004871 ORTHO05D005755 1.0e-175 620.5 476 68.7
Potri.017G069800 Populus trichocarpa HOM05D004871 ORTHO05D005755 7.0e-172 607.8 486 68.1
MD09G1027100 Malus domestica HOM05D004871 ORTHO05D005755 2.7e-171 605.9 476 71.6
FAN14G1702 Fragaria x ananassa HOM05D004871 ORTHO05D005755 3.0e-167 592.4 478 70.9
FvH4_6g51200 Fragaria vesca HOM05D004871 ORTHO05D005755 5.2e-167 591.7 478 71.3
FAN02G2556 Fragaria x ananassa HOM05D004871 ORTHO05D005755 8.9e-167 590.9 478 71.3
CANSAT64G1143 Cannabis sativa HOM05D004871 ORTHO05D005755 2.0e-166 589.7 483 66.5
Ciclev10015079m.g Citrus clementina HOM05D004871 ORTHO05D005755 5.7e-166 588.2 483 65.8
Duzib147G1217 Durio zibethinus HOM05D004871 ORTHO05D005755 8.3e-165 584.3 480 65.8
Sabra17G0062100 Salix brachista HOM05D004871 ORTHO05D005755 1.8e-164 583.2 489 69.3
Manes.15G150700 Manihot esculenta HOM05D004871 ORTHO05D005755 1.9e-161 573.2 485 65.2
Lj1g0007322 Lotus japonicus HOM05D004871 ORTHO05D005755 2.5e-161 572.8 482 69.5
Thecc.04G017200 Theobroma cacao HOM05D004871 ORTHO05D005755 2.1e-160 569.7 468 66.5
Cpa.g.sc130.82 Carica papaya HOM05D004871 ORTHO05D005755 8.0e-160 567.8 479 64.5
TWI12G0316 Tripterygium wilfordii HOM05D004871 ORTHO05D005755 3.1e-159 565.8 479 63.7
Eucgr.J02242 Eucalyptus grandis HOM05D004871 ORTHO05D005755 4.0e-159 565.5 484 67.4
Atru.chr6.2393 Acer truncatum HOM05D004871 ORTHO05D005755 5.8e-158 561.6 482 63.1
Gorai.001G265000 Gossypium raimondii HOM05D004871 ORTHO05D005755 6.4e-157 558.1 476 62.4
Gorai.012G064200 Gossypium raimondii HOM05D004871 ORTHO05D005755 1.9e-156 556.6 480 61.7
Gohir.D07G229900 Gossypium hirsutum HOM05D004871 ORTHO05D005755 1.2e-155 553.9 477 61.8
Gohir.D04G057500 Gossypium hirsutum HOM05D004871 ORTHO05D005755 2.0e-155 553.1 480 61.2
Gohir.A05G355800 Gossypium hirsutum HOM05D004871 ORTHO05D005755 7.8e-155 551.2 480 61.9
COL.COLO4_29115 Corchorus olitorius HOM05D004871 ORTHO05D005755 1.3e-154 550.4 479 63.3
ClCG10G013890 Citrullus lanatus HOM05D004871 ORTHO05D005755 1.1e-148 530.8 478 60.0
Hma1.2p1_2120F.1_g314420 Hydrangea macrophylla HOM05D004871 ORTHO05D005755 1.3e-146 523.9 478 61.3
PGR083G0754 Punica granatum HOM05D004871 ORTHO05D005755 1.4e-143 513.8 482 60.8
Eucgr.H01852 Eucalyptus grandis HOM05D004871 ORTHO05D005755 8.9e-143 511.1 487 63.0
Nn3g16731 Nelumbo nucifera HOM05D004871 ORTHO05D005755 6.4e-141 505.0 492 57.9
Nn3g16736 Nelumbo nucifera HOM05D004871 ORTHO05D005755 6.4e-141 505.0 492 57.9
MELO3C026581.2 Cucumis melo HOM05D004871 ORTHO05D005755 1.4e-140 503.8 478 57.7
FAN05G1656 Fragaria x ananassa HOM05D004871 ORTHO05D005755 5.4e-140 501.9 362 73.2
CsaV3_3G042800 Cucumis sativus L. HOM05D004871 ORTHO05D005755 1.6e-139 500.4 478 57.5
Sc16g0004350 Simmondsia chinensis HOM05D004871 ORTHO05D005755 1.6e-136 490.3 478 63.2
Peaxi162Scf00129g00168 Petunia axillaris HOM05D004871 ORTHO05D005755 1.8e-135 486.9 477 57.9
Oeu054623.1 Olea europaea HOM05D004871 ORTHO05D005755 2.4e-135 486.5 482 58.3
Medtr7g033720 Medicago truncatula HOM05D004871 ORTHO05D005755 4.0e-135 485.7 481 61.3
PGSC0003DMG400012633 Solanum tuberosum HOM05D004871 ORTHO05D005755 6.8e-135 485.0 478 57.9
CSS0032397 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 2.0e-134 483.4 470 62.1
Phvul.008G154600 Phaseolus vulgaris HOM05D004871 ORTHO05D005755 1.3e-133 480.7 479 62.2
Glyma.19G068600 Glycine max HOM05D004871 ORTHO05D005755 3.8e-133 479.2 483 62.9
Sopen02g031150 Solanum pennellii HOM05D004871 ORTHO05D005755 1.6e-131 473.8 478 56.7
Ca_23007_v3 Cicer arietinum L. HOM05D004871 ORTHO05D005755 2.1e-131 473.4 485 60.4
Lalb_Chr24g0402861 Lupinus albus HOM05D004871 ORTHO05D005755 2.7e-131 473.0 489 58.9
DCAR_021722 Daucus carota HOM05D004871 ORTHO05D005755 1.7e-130 470.3 479 56.2
Lalb_Chr14g0362771 Lupinus albus HOM05D004871 ORTHO05D005755 1.7e-130 470.3 483 61.1
Eucgr.L00043 Eucalyptus grandis HOM05D004871 ORTHO05D005755 1.1e-129 467.6 487 57.9
CAN.G473.11 Capsicum annuum HOM05D004871 ORTHO05D005755 1.5e-129 467.2 481 56.1
Sed0007166 Sechium edule HOM05D004871 ORTHO05D005755 2.5e-129 466.5 478 54.8
TAR622G0125 Trochodendron aralioides HOM05D004871 ORTHO05D005755 3.3e-129 466.1 415 61.0
Dinv35106 Davidia involucrata HOM05D004871 ORTHO05D005755 5.6e-129 465.3 480 60.8
Cc07_g01680 Coffea canephora HOM05D004871 ORTHO05D005755 8.1e-128 461.5 477 57.7
Lju41C42T3 Lonicera japonica HOM05D004871 ORTHO05D005755 1.8e-127 460.3 417 61.4
THA.LOC104825322 Tarenaya hassleriana HOM05D004871 ORTHO05D005755 2.6e-126 456.4 480 58.8
Rhsim08G0050600 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.2e-125 453.4 495 58.2
Oeu018139.1 Olea europaea HOM05D004871 ORTHO05D005755 4.2e-124 449.1 482 54.4
PSO832G2649 Papaver somniferum HOM05D004871 ORTHO05D005755 1.3e-120 437.6 495 53.5
vmacro18283 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 9.0e-119 431.4 483 52.2
PSO063G1038 Papaver somniferum HOM05D004871 ORTHO05D005755 2.6e-118 429.9 488 53.5
vmacro23390 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 2.6e-118 429.9 483 52.0
vmacro23391 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 2.6e-118 429.9 480 57.7
Gohir.A07G223200 Gossypium hirsutum HOM05D004871 ORTHO05D005755 1.3e-117 427.6 477 52.0
Peaxi162Scf00129g01652 Petunia axillaris HOM05D004871 ORTHO05D005755 1.3e-114 417.5 403 58.8
TAR371G0422 Trochodendron aralioides HOM05D004871 ORTHO05D005755 3.9e-114 416.0 482 56.4
Rhsim08G0050100 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.1e-113 414.5 480 56.2
Thhalv10028043m.g Eutrema salsugineum HOM05D004871 ORTHO05D005755 5.6e-113 412.1 493 49.5
BraA04t17009Z Brassica rapa HOM05D004871 ORTHO05D005755 7.4e-113 411.8 487 49.7
Lsat_1_v5_gn_0_47681 Lactuca sativa HOM05D004871 ORTHO05D005755 2.8e-112 409.8 480 50.6
A04p13500 Brassica napus HOM05D004871 ORTHO05D005755 6.9e-111 405.2 482 51.7
Rhsim08G0049600 Rhododendron simsii HOM05D004871 ORTHO05D005755 6.9e-111 405.2 487 53.6
Rhsim08G0048900 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.5e-110 404.1 481 55.9
Migut.H00077 Erythranthe guttata HOM05D004871 ORTHO05D005755 2.6e-110 403.3 484 51.7
C04p47280 Brassica napus HOM05D004871 ORTHO05D005755 1.7e-109 400.6 488 53.3
BolC4t26328H Brassica oleracea HOM05D004871 ORTHO05D005755 1.7e-109 400.6 488 53.3
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 4.9e-109 399.1 328 64.0
SalBow2G2412 Salvia bowleyana HOM05D004871 ORTHO05D005755 6.5e-109 398.7 482 55.4
Aqoxy5G03783 Aquilegia oxysepala HOM05D004871 ORTHO05D005755 8.4e-109 398.3 492 51.2
Lj7C599T13 Lonicera japonica HOM05D004871 ORTHO05D005755 3.2e-108 396.4 495 48.9
MSTRG.24039 Avicennia marina HOM05D004871 ORTHO05D005755 2.7e-107 393.3 467 49.9
CARHR261520 Cardamine hirsuta HOM05D004871 ORTHO05D005755 3.5e-107 392.9 495 49.7
Atru.chr6.2392 Acer truncatum HOM05D004871 ORTHO05D005755 4.6e-107 392.5 309 62.8
SGA_v2.0_scaffold18G08277 Striga asiatica HOM05D004871 ORTHO05D005755 3.9e-106 389.4 481 48.9
Sp7g01440 Schrenkiella parvula HOM05D004871 ORTHO05D005755 8.7e-106 388.3 498 50.0
TAR371G0152 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.1e-105 387.9 476 54.4
Nitab4.5_0002468g0010 Nicotiana tabacum HOM05D004871 ORTHO05D005755 1.9e-105 387.1 338 62.4
Glyma.16G071200 Glycine max HOM05D004871 ORTHO05D005755 5.7e-105 385.6 480 53.8
TAR371G1027 Trochodendron aralioides HOM05D004871 ORTHO05D005755 3.7e-104 382.9 481 52.8
GSVIVG01032408001 Vitis vinifera HOM05D004871 ORTHO05D005755 3.7e-104 382.9 296 75.0
SalBow1G4779 Salvia bowleyana HOM05D004871 ORTHO05D005755 1.1e-103 381.3 481 48.0
ATR0686G244 Amborella trichopoda HOM05D004871 ORTHO05D005755 1.8e-103 380.6 474 53.2
HanXRQChr17g0548491 Helianthus annuus HOM05D004871 ORTHO05D005755 2.4e-103 380.2 480 47.9
Nitab4.5_0003318g0120 Nicotiana tabacum HOM05D004871 ORTHO05D005755 1.5e-102 377.5 337 61.7
Rhsim08G0049400 Rhododendron simsii HOM05D004871 ORTHO05D005755 5.9e-102 375.6 425 52.9
CDE08G0710 Ceratophyllum demersum HOM05D004871 ORTHO05D005755 1.0e-101 374.8 411 53.8
Rhsim08G0050200 Rhododendron simsii HOM05D004871 ORTHO05D005755 6.5e-101 372.1 479 53.2
vmacro18285 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 4.2e-100 369.4 481 53.0
vmacro23392 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 4.2e-100 369.4 481 53.0
Rhsim08G0049300 Rhododendron simsii HOM05D004871 ORTHO05D005755 4.6e-99 365.9 488 46.9
Aa31LG9G1150 Aethionema arabicum HOM05D004871 ORTHO05D005755 1.3e-98 364.4 507 45.2
AT5G40470 Arabidopsis thaliana HOM05D004871 ORTHO05D005755 5.1e-98 362.5 502 46.0
Rhsim08G0049200 Rhododendron simsii HOM05D004871 ORTHO05D005755 5.7e-97 359.0 290 72.8
Carub.0007s3511 Capsella rubella HOM05D004871 ORTHO05D005755 4.8e-96 355.9 502 45.4
Psat3g166880 Pisum sativum HOM05D004871 ORTHO05D005755 3.4e-94 349.7 299 66.6
Rhsim08G0050500 Rhododendron simsii HOM05D004871 ORTHO05D005755 5.0e-93 345.9 488 52.7
AL7G49360 Arabidopsis lyrata HOM05D004871 ORTHO05D005755 2.5e-92 343.6 504 45.0
vmacro18284 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 2.5e-92 343.6 356 60.7
HPP92_009906 Vanilla planifolia HOM05D004871 ORTHO05D005755 1.2e-91 341.3 499 45.5
Rhsim08G0050400 Rhododendron simsii HOM05D004871 ORTHO05D005755 6.7e-90 335.5 473 53.3
VMungo1383G0924 Vigna mungo HOM05D004871 ORTHO05D005755 8.8e-90 335.1 288 68.8
Rhsim08G0049900 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.1e-87 326.6 481 49.3
Zm00001eb246170 Zea mays HOM05D004871 ORTHO05D005755 2.6e-86 323.6 484 43.0
TAR633G0371 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.7e-85 320.9 343 53.1
HanXRQChr15g0475301 Helianthus annuus HOM05D004871 ORTHO05D005755 6.5e-85 318.9 479 42.6
BcaB06g27513 Brassica carinata HOM05D004871 ORTHO05D005755 1.0e-82 311.6 488 46.5
Rhsim08G0050000 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.0e-82 310.1 483 47.8
unitig_899.g14805 Utricularia gibba HOM05D004871 ORTHO05D005755 4.4e-81 306.2 412 46.4
FAN09G0732 Fragaria x ananassa HOM05D000795 ORTHO05D005755 2.8e-80 303.5 240 75.4
Nn1g05920 Nelumbo nucifera HOM05D004871 ORTHO05D005755 6.5e-77 292.4 255 61.6
Actinidia35771 Actinidia chinensis HOM05D004871 ORTHO05D005755 5.2e-74 282.7 332 53.3
Rhsim08G0049500 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.4e-71 273.9 381 45.4
Peaxi162Scf00129g01633 Petunia axillaris HOM05D004871 ORTHO05D005755 1.7e-69 267.7 208 65.4
SMO298G0062 Selaginella moellendorffii HOM05D004871 ORTHO05D005755 2.7e-62 243.8 473 37.6
Cc00_g26710 Coffea canephora HOM05D004871 ORTHO05D005755 2.1e-59 234.2 301 50.8
Rhsim08G0050300 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.7e-56 224.6 263 49.8
TPR.G1076 Trifolium pratense HOM05D004871 ORTHO05D005755 3.5e-54 216.9 466 40.8
TAR374G1232 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.3e-50 204.1 156 68.6
CSS0034270 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 2.9e-48 197.2 168 80.4
TAR371G0343 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.9e-48 197.2 175 60.0
ATR0589G064 Amborella trichopoda HOM05D004871 ORTHO05D005755 1.3e-45 188.3 323 43.3
FAN05G3698 Fragaria x ananassa HOM05D004871 ORTHO05D005755 8.0e-43 179.1 166 72.3
TAR629G3424 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.3e-40 171.8 235 45.1
FAN27G1866 Fragaria x ananassa HOM05D004871 ORTHO05D005755 2.3e-37 161.0 158 56.3
ATR0762G040 Amborella trichopoda HOM05D004871 ORTHO05D005755 3.9e-37 160.2 273 43.2
FAN09G0037 Fragaria x ananassa HOM05D004871 ORTHO05D005755 3.6e-35 153.7 153 57.5
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 5.8e-33 146.4 150 54.7
CSS0039002 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.9e-31 141.4 87 82.8
Rhsim08G0180400 Rhododendron simsii HOM05D001576 ORTHO05D000401 1.9e-31 141.4 104 66.3
BcaB07g32983 Brassica carinata HOM05D004871 ORTHO05D005755 7.1e-31 139.4 123 56.1
Solyc02g086440.4 Solanum lycopersicum HOM05D004871 ORTHO05D005755 1.6e-30 138.3 206 46.1
CSS0033026 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 7.6e-25 119.4 72 83.3
HanXRQChr07g0188231 Helianthus annuus HOM05D004871 ORTHO05D005755 8.4e-24 115.9 149 43.0
Nitab4.5_0007441g0020 Nicotiana tabacum HOM05D004871 ORTHO05D005755 1.6e-22 111.7 79 69.6
TAR314G0001 Trochodendron aralioides HOM05D004871 ORTHO05D005755 6.0e-22 109.8 120 45.8
FAN14G0631 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.2e-19 102.1 90 61.1
TAR314G0006 Trochodendron aralioides HOM05D004871 ORTHO05D005755 5.6e-12 76.6 89 42.7
BraA03t09402Z Brassica rapa HOM05D002125 ORTHO05D002105 1.8e-10 71.6 192 33.3
ClCG02G019190 Citrullus lanatus HOM05D002125 ORTHO05D002105 1.5e-09 68.6 181 35.4
CsaV3_6G018970 Cucumis sativus L. HOM05D002125 ORTHO05D002105 2.6e-09 67.8 181 35.9
MELO3C025685.2 Cucumis melo HOM05D002125 ORTHO05D002105 1.3e-08 65.5 174 36.2
C03p00270 Brassica napus HOM05D002125 ORTHO05D002105 3.8e-08 63.9 192 31.8
Sc23g0005220 Simmondsia chinensis HOM05D002813 ORTHO05D003203 1.4e-07 62.0 309 26.2
BcaB01g06117 Brassica carinata HOM05D002125 ORTHO05D002105 3.2e-07 60.8 195 30.8
BolC3t12601H Brassica oleracea HOM05D002125 ORTHO05D002105 3.2e-07 60.8 195 30.8
EL10Ac7g16789 Beta vulgaris HOM05D002125 ORTHO05D002105 4.2e-07 60.5 395 28.1
Eucgr.J01853 Eucalyptus grandis HOM05D002125 ORTHO05D002105 5.4e-07 60.1 172 33.7
Cfa011788 Carpinus fangiana HOM05D002125 ORTHO05D002105 7.1e-07 59.7 185 33.0
QL01p025894 Quercus lobata HOM05D002125 ORTHO05D002105 7.1e-07 59.7 224 26.3
MSTRG.9106 Avicennia marina HOM05D002813 ORTHO05D003203 9.3e-07 59.3 240 30.8
CsaV3_3G033360 Cucumis sativus L. HOM05D002125 ORTHO05D002105 1.2e-06 58.9 232 28.0
VMungo0647G0746 Vigna mungo HOM05D002125 ORTHO05D002105 2.1e-06 58.2 227 28.6
Phvul.006G157700 Phaseolus vulgaris HOM05D002762 ORTHO05D004643 3.5e-06 57.4 290 27.2
Nitab4.5_0007441g0040 Nicotiana tabacum HOM05D004871 ORTHO05D005755 6.0e-06 56.6 40 62.5
SalBow5G0120 Salvia bowleyana HOM05D002503 ORTHO05D002810 6.0e-06 56.6 203 26.6


User provided reference genes

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