Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p074005 Quercus lobata HOM05D004929 ORTHO05D006492 1.2e-208 729.6 360 100.0
Haze_14758 Corylus avellana HOM05D004929 ORTHO05D006492 4.2e-177 624.8 358 84.4
Cfa007339 Carpinus fangiana HOM05D004929 ORTHO05D006492 5.4e-177 624.4 357 84.3
CiPaw.04G029600 Carya illinoinensis HOM05D004929 ORTHO05D006492 6.0e-176 620.9 348 86.5
CiPaw.03G045500 Carya illinoinensis HOM05D004929 ORTHO05D006492 1.3e-175 619.8 347 86.2
MELO3C021592.2 Cucumis melo HOM05D004929 ORTHO05D006492 1.3e-170 603.2 358 80.7
Dinv25726 Davidia involucrata HOM05D004929 ORTHO05D006492 1.3e-170 603.2 355 82.3
Nn8g40033 Nelumbo nucifera HOM05D004929 ORTHO05D006492 1.1e-169 600.1 346 82.9
vmacro05876 Vaccinium macrocarpon HOM05D004929 ORTHO05D006492 2.5e-169 599.0 347 81.8
Rhsim10G0014700 Rhododendron simsii HOM05D004929 ORTHO05D006492 4.2e-169 598.2 347 82.4
CsaV3_5G027030 Cucumis sativus L. HOM05D004929 ORTHO05D006492 9.3e-169 597.0 358 79.9
GSVIVG01032385001 Vitis vinifera HOM05D004929 ORTHO05D006492 2.7e-168 595.5 346 83.2
Actinidia05982 Actinidia chinensis HOM05D004929 ORTHO05D006492 7.9e-168 594.0 346 81.2
TAR633G2310 Trochodendron aralioides HOM05D004929 ORTHO05D006492 3.9e-167 591.7 357 80.7
ClCG09G019380 Citrullus lanatus HOM05D004929 ORTHO05D006492 5.1e-167 591.3 357 79.0
Duzib147G0164 Durio zibethinus HOM05D004929 ORTHO05D006492 8.7e-167 590.5 347 81.8
Thecc.04G019500 Theobroma cacao HOM05D004929 ORTHO05D006492 4.3e-166 588.2 349 81.1
Sed0027438 Sechium edule HOM05D004929 ORTHO05D006492 1.6e-165 586.3 351 79.8
Manes.15G151900 Manihot esculenta HOM05D004929 ORTHO05D006492 3.7e-165 585.1 348 80.7
Ciclev10015593m.g Citrus clementina HOM05D004929 ORTHO05D006492 8.2e-165 583.9 349 79.4
THA.LOC104821096 Tarenaya hassleriana HOM05D004929 ORTHO05D006492 8.2e-165 583.9 356 79.2
Sed0020215 Sechium edule HOM05D004929 ORTHO05D006492 1.4e-164 583.2 358 78.2
Gohir.D09G029800 Gossypium hirsutum HOM05D004929 ORTHO05D006492 1.8e-164 582.8 348 79.9
Gorai.006G034800 Gossypium raimondii HOM05D004929 ORTHO05D006492 1.8e-164 582.8 348 80.2
MD09G1023000 Malus domestica HOM05D004929 ORTHO05D006492 1.8e-164 582.8 359 78.8
Potri.001G343400 Populus trichocarpa HOM05D004929 ORTHO05D006492 6.9e-164 580.9 357 77.3
Prupe.3G293800 Prunus persica HOM05D004929 ORTHO05D006492 1.5e-163 579.7 357 80.1
AL3G10510 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 2.0e-163 579.3 346 79.2
Cc09_g04510 Coffea canephora HOM05D004929 ORTHO05D006492 2.0e-163 579.3 350 79.4
Aa31LG5G10780 Aethionema arabicum HOM05D004929 ORTHO05D006492 2.6e-163 578.9 348 80.7
Lju41A43T26 Lonicera japonica HOM05D004929 ORTHO05D006492 4.5e-163 578.2 355 78.3
MD17G1022300 Malus domestica HOM05D004929 ORTHO05D006492 4.5e-163 578.2 349 80.5
Sabra16G0222700 Salix brachista HOM05D004929 ORTHO05D006492 1.0e-162 577.0 360 76.4
FvH4_6g51800 Fragaria vesca HOM05D004929 ORTHO05D006492 1.3e-162 576.6 359 78.6
RcHm_v2.0_Chr2g0173281 Rosa chinensis HOM05D004929 ORTHO05D006492 1.3e-162 576.6 358 78.2
Gohir.A09G030100 Gossypium hirsutum HOM05D004929 ORTHO05D006492 1.7e-162 576.2 348 79.0
BraA03t12414Z Brassica rapa HOM05D004929 ORTHO05D006492 2.2e-162 575.9 354 77.7
AT3G01640 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 3.8e-162 575.1 346 78.6
FAN09G2944 Fragaria x ananassa HOM05D004929 ORTHO05D006492 3.8e-162 575.1 359 78.6
FAN14G2766 Fragaria x ananassa HOM05D004929 ORTHO05D006492 4.9e-162 574.7 359 78.6
Thhalv10020980m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 6.5e-162 574.3 359 77.2
CARHR075280 Cardamine hirsuta HOM05D004929 ORTHO05D006492 1.9e-161 572.8 348 77.9
A03p32440 Brassica napus HOM05D004929 ORTHO05D006492 2.5e-161 572.4 354 77.4
BcaC01g04530 Brassica carinata HOM05D004929 ORTHO05D006492 3.2e-161 572.0 358 76.0
C03p39500 Brassica napus HOM05D004929 ORTHO05D006492 5.5e-161 571.2 358 76.3
Sp3g00410 Schrenkiella parvula HOM05D004929 ORTHO05D006492 7.1e-161 570.9 357 77.0
Nitab4.5_0001860g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 2.1e-160 569.3 352 77.8
PGR142G3088 Punica granatum HOM05D004929 ORTHO05D006492 2.7e-160 568.9 356 78.1
AL6G25200 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 3.5e-160 568.5 356 77.8
BolC3t16218H Brassica oleracea HOM05D004929 ORTHO05D006492 3.5e-160 568.5 358 75.7
Cpa.g.sc108.76 Carica papaya HOM05D003450 ORTHO05D004150 7.9e-160 567.4 356 74.7
PSO384G0906 Papaver somniferum HOM05D004929 ORTHO05D006492 7.9e-160 567.4 346 78.3
Carub.0003s0042 Capsella rubella HOM05D004929 ORTHO05D006492 1.3e-159 566.6 346 78.0
FAN05G4087 Fragaria x ananassa HOM05D004929 ORTHO05D006492 1.8e-159 566.2 348 79.0
BcaB08g36997 Brassica carinata HOM05D004929 ORTHO05D006492 2.3e-159 565.8 357 77.6
Peaxi162Scf03028g00012 Petunia axillaris HOM05D004929 ORTHO05D006492 2.3e-159 565.8 347 79.0
Solyc02g093440.4 Solanum lycopersicum HOM05D004929 ORTHO05D006492 2.3e-159 565.8 348 78.4
SalBow7G3047 Salvia bowleyana HOM05D004929 ORTHO05D006492 3.0e-159 565.5 347 77.5
BraA10t44472Z Brassica rapa HOM05D004929 ORTHO05D006492 3.9e-159 565.1 355 77.2
PSO699G0033 Papaver somniferum HOM05D004929 ORTHO05D006492 3.9e-159 565.1 345 78.3
Peaxi162Scf00129g01650 Petunia axillaris HOM05D004929 ORTHO05D006492 8.7e-159 563.9 347 78.7
Sopen02g038230 Solanum pennellii HOM05D004929 ORTHO05D006492 8.7e-159 563.9 348 78.4
MBI05_g22077_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 1.1e-158 563.5 348 79.3
TWI56G0780 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 1.1e-158 563.5 349 77.1
Peaxi162Scf00080g01316 Petunia axillaris HOM05D004929 ORTHO05D005557 1.9e-158 562.8 347 78.7
TWI12G0632 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 3.3e-158 562.0 347 77.8
FAN02G0047 Fragaria x ananassa HOM05D004929 ORTHO05D006492 4.3e-158 561.6 371 75.5
PGSC0003DMG400012608 Solanum tuberosum HOM05D004929 ORTHO05D006492 5.7e-158 561.2 347 78.4
Aqoxy4G03095 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 7.4e-158 560.8 354 75.4
Carub.0006s1265 Capsella rubella HOM05D004929 ORTHO05D006492 9.7e-158 560.5 358 76.8
CAN.G473.20 Capsicum annuum HOM05D004929 ORTHO05D006492 1.3e-157 560.1 352 77.0
AT5G14470 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 2.2e-157 559.3 356 76.4
Migut.K01411 Erythranthe guttata HOM05D004929 ORTHO05D006492 2.2e-157 559.3 353 75.4
Aqoxy5G00914 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 2.8e-157 558.9 346 78.3
Thhalv10013912m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 3.7e-157 558.5 353 75.4
EL10Ac6g14097 Beta vulgaris HOM05D004929 ORTHO05D006492 6.3e-157 557.8 344 77.9
CANSAT64G1903 Cannabis sativa HOM05D004929 ORTHO05D006492 8.2e-157 557.4 350 76.3
Hund23289 Selenicereus undatus HOM05D004929 ORTHO05D006492 8.2e-157 557.4 344 77.9
CARHR198840 Cardamine hirsuta HOM05D004929 ORTHO05D006492 1.1e-156 557.0 350 76.6
arahy.Tifrunner.gnm1.ann1.NF5K9F Arachis hypogaea HOM05D004929 ORTHO05D006492 4.1e-156 555.1 347 78.4
arahy.Tifrunner.gnm1.ann1.FEY4ZS Arachis hypogaea HOM05D004929 ORTHO05D006492 6.9e-156 554.3 347 78.4
Glyma.05G002500 Glycine max HOM05D004929 ORTHO05D006492 1.5e-155 553.1 352 75.3
HPP92_015407 Vanilla planifolia HOM05D004929 ORTHO05D006492 1.0e-154 550.4 343 76.4
Ca_04143_v3 Cicer arietinum L. HOM05D004929 ORTHO05D006492 1.7e-154 549.7 347 77.8
DCAR_021732 Daucus carota HOM05D004929 ORTHO05D006492 3.8e-154 548.5 330 79.1
Medtr6g004430 Medicago truncatula HOM05D004929 ORTHO05D006492 3.8e-154 548.5 348 77.6
MSTRG.3138 Avicennia marina HOM05D004929 ORTHO05D006492 5.0e-154 548.1 351 74.6
VMungo0464G1388 Vigna mungo HOM05D004929 ORTHO05D006492 8.5e-154 547.4 350 76.0
Phvul.004G004700 Phaseolus vulgaris HOM05D004929 ORTHO05D006492 3.2e-153 545.4 349 75.6
Duzib264G0638 Durio zibethinus HOM05D004929 ORTHO05D006492 4.2e-153 545.0 381 71.9
ECA246G1179 Erigeron canadensis HOM05D004929 ORTHO05D006492 6.1e-152 541.2 356 75.0
TPR.G31950 Trifolium pratense HOM05D004929 ORTHO05D006492 6.1e-152 541.2 352 75.9
AUR62008872 Chenopodium quinoa HOM05D004929 ORTHO05D006492 2.3e-151 539.3 349 75.4
HanXRQChr17g0548641 Helianthus annuus HOM05D004929 ORTHO05D006492 2.0e-150 536.2 347 74.9
Lsat_1_v5_gn_0_18301 Lactuca sativa HOM05D004929 ORTHO05D006492 3.3e-150 535.4 347 73.5
Lalb_Chr06g0176621 Lupinus albus HOM05D004929 ORTHO05D006492 3.3e-150 535.4 349 72.5
HanXRQChr17g0548651 Helianthus annuus HOM05D004929 ORTHO05D006492 7.4e-150 534.3 341 75.1
BcaC04g19032 Brassica carinata HOM05D004929 ORTHO05D006492 4.8e-149 531.6 359 74.1
Ah.03g137000 Amaranthus hybridus HOM05D004929 ORTHO05D006492 2.4e-148 529.3 345 73.9
Lj2g0024676 Lotus japonicus HOM05D004929 ORTHO05D006492 4.1e-148 528.5 347 74.9
BcaB08g36995 Brassica carinata HOM05D004929 ORTHO05D006492 2.0e-147 526.2 365 72.9
AUR62031837 Chenopodium quinoa HOM05D004929 ORTHO05D006492 3.4e-147 525.4 389 67.6
Zm00001eb025800 Zea mays HOM05D004929 ORTHO05D006492 4.5e-147 525.0 347 73.8
Os11g0217300 Oryza sativa ssp. japonica HOM05D004929 ORTHO05D006492 3.2e-145 518.8 340 74.1
ATR0827G043 Amborella trichopoda HOM05D004929 ORTHO05D006492 3.6e-144 515.4 366 69.7
arahy.Tifrunner.gnm1.ann1.BJ3QP1 Arachis hypogaea HOM05D004929 ORTHO05D006492 3.6e-144 515.4 314 80.6
Oeu018151.1 Olea europaea HOM05D004929 ORTHO05D006492 1.2e-139 500.4 358 69.3
SHI00354 Sapria himalayana HOM05D004929 ORTHO05D006492 3.6e-136 488.8 342 68.7
COL.COLO4_29172 Corchorus olitorius HOM05D004929 ORTHO05D006492 5.7e-134 481.5 358 68.4
Eucgr.I01731 Eucalyptus grandis HOM05D004929 ORTHO05D006492 4.8e-133 478.4 285 81.4
A10p24090 Brassica napus HOM05D004929 ORTHO05D006492 1.4e-132 476.9 358 67.0
Dinv33427 Davidia involucrata HOM05D004929 ORTHO05D006492 1.3e-130 470.3 279 81.7
Sc03g0007290 Simmondsia chinensis HOM05D004929 ORTHO05D006492 3.2e-129 465.7 269 83.3
SGA_v2.0_scaffold30G12409 Striga asiatica HOM05D004929 ORTHO05D006492 9.8e-126 454.1 269 80.7
SMO145G0043 Selaginella moellendorffii HOM05D004929 ORTHO05D006492 1.4e-124 450.3 328 65.5
Nitab4.5_0006683g0060 Nicotiana tabacum HOM05D004929 ORTHO05D006492 5.5e-121 438.3 352 63.6
HPP92_026990 Vanilla planifolia HOM05D004929 ORTHO05D006492 1.4e-119 433.7 265 79.2
Psat1g053480 Pisum sativum HOM05D004929 ORTHO05D006492 3.0e-119 432.6 269 78.4
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 4.4e-118 428.7 268 76.5
CBR_g3618 Chara braunii HOM05D004929 ORTHO05D006492 4.9e-109 398.7 341 58.1
AagrBONN_evm.TU.Sc2ySwM_228.449 Anthoceros agrestis HOM05D000718 ORTHO05D002712 8.3e-109 397.9 328 60.7
Atru.chr6.2430 Acer truncatum HOM05D004929 ORTHO05D006492 1.1e-108 397.5 237 79.7
Mapoly0023s0058 Marchantia polymorpha HOM05D004929 ORTHO05D006492 1.1e-108 397.5 341 60.7
ATR0681G379 Amborella trichopoda HOM05D004929 ORTHO05D006492 8.6e-106 387.9 251 76.5
SGA_v2.0_scaffold47G17516 Striga asiatica HOM05D004929 ORTHO05D006492 5.6e-105 385.2 332 61.1
C09p62710 Brassica napus HOM05D004929 ORTHO05D006492 2.0e-102 376.7 358 56.4
BolC9t59108H Brassica oleracea HOM05D004929 ORTHO05D006492 2.0e-102 376.7 367 55.9
Pp3c22_9380 Physcomitrium patens HOM05D004929 ORTHO05D006492 5.4e-100 368.6 275 64.4
SHI25478 Sapria himalayana HOM05D004929 ORTHO05D006492 9.2e-100 367.9 276 65.6
Nitab4.5_0000040g0670 Nicotiana tabacum HOM05D004929 ORTHO05D006492 1.2e-88 330.9 358 52.2
CDE07G0337 Ceratophyllum demersum HOM05D004929 ORTHO05D006492 5.2e-87 325.5 208 74.5
Cre02.g107600 Chlamydomonas reinhardtii HOM05D004929 ORTHO05D006492 8.4e-85 318.2 350 50.6
MCO09G795 Micromonas commoda HOM05D004929 ORTHO05D006492 1.1e-81 307.8 350 48.6
PRCOL_00005101 Prasinoderma coloniale HOM05D004929 ORTHO05D006492 8.9e-79 298.1 343 49.3
Nitab4.5_0001550g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 1.6e-75 287.3 233 65.7
Oeu033729.3 Olea europaea HOM05D004929 ORTHO05D006492 6.9e-71 271.9 210 66.7
BcaB08g36982 Brassica carinata HOM05D004929 ORTHO05D006492 1.5e-70 270.8 166 79.5
MBI05_g01825_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 1.5e-65 254.2 215 61.9
BolC9t59344H Brassica oleracea HOM05D004929 ORTHO05D006492 1.0e-58 231.5 196 62.8
MSTRG.3285 Avicennia marina HOM05D004929 ORTHO05D006492 6.7e-50 202.2 131 75.6
Atru.chr6.2429 Acer truncatum HOM05D004929 ORTHO05D006492 1.5e-49 201.1 115 80.0
CDE07G1161 Ceratophyllum demersum HOM05D004929 ORTHO05D043891 5.9e-38 162.5 113 69.9
A10p26090 Brassica napus HOM05D004929 ORTHO05D006492 6.9e-31 139.0 189 45.5
BcaNung06761 Brassica carinata HOM05D004929 ORTHO05D006492 2.0e-25 120.9 70 81.4
MD17G1022500 Malus domestica HOM05D004929 ORTHO05D006492 2.0e-22 110.9 77 70.1
Sopen02g038030 Solanum pennellii HOM05D004929 ORTHO05D006492 1.7e-21 107.8 62 74.2
Sp6g29550 Schrenkiella parvula HOM05D004929 ORTHO05D043891 4.2e-20 103.2 66 72.7
arahy.Tifrunner.gnm1.ann1.6CI6DX Arachis hypogaea HOM05D004929 ORTHO05D031499 2.3e-10 70.9 44 70.5
arahy.Tifrunner.gnm1.ann1.XQCE19 Arachis hypogaea HOM05D004929 ORTHO05D031499 1.3e-08 65.1 40 67.5
Glyma.19G002700 Glycine max HOM05D004929 ORTHO05D215243 1.4e-07 61.6 82 42.7
Ah.05g179300 Amaranthus hybridus HOM05D006425 ORTHO05D007312 2.0e-06 57.8 212 26.9
AUR62004524 Chenopodium quinoa HOM05D006425 ORTHO05D007312 2.7e-06 57.4 200 27.0
PSO782G0220 Papaver somniferum HOM05D006425 ORTHO05D007312 2.7e-06 57.4 256 26.6
GSVIVG01027188001 Vitis vinifera HOM05D006425 ORTHO05D007312 2.7e-06 57.4 232 25.0
AUR62022731 Chenopodium quinoa HOM05D006425 ORTHO05D007312 3.5e-06 57.0 200 27.5


User provided reference genes

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