Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 1.1e-237 826.2 409 100.0
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 2.2e-142 509.6 578 52.9
QL02p069122 Quercus lobata HOM05D007742 ORTHO05D004072 5.4e-88 328.9 179 97.2
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 3.7e-65 253.1 615 32.7
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 5.4e-56 222.6 574 30.0
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 1.9e-53 214.2 629 29.7
Haze_14967 Corylus avellana HOM05D007742 ORTHO05D004072 1.5e-45 188.0 186 60.8
QL09p009056 Quercus lobata HOM05D004225 ORTHO05D004728 1.2e-39 168.3 175 57.1
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 7.9e-31 139.0 633 22.1
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 3.9e-30 136.7 560 25.2
Prupe.3G314400 Prunus persica HOM05D007742 ORTHO05D004072 8.2e-28 129.0 229 38.4
Manes.04G094400 Manihot esculenta HOM05D007742 ORTHO05D004072 4.1e-27 126.7 540 25.0
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 1.0e-25 122.1 166 42.2
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 2.2e-25 120.9 512 23.8
Hma1.2p1_0868F.1_g230420 Hydrangea macrophylla HOM05D007742 ORTHO05D004072 6.5e-25 119.4 215 38.1
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 6.5e-25 119.4 512 23.4
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 1.1e-24 118.6 375 26.1
Aa31LG2G11790 Aethionema arabicum HOM05D009880 ORTHO05D004072 1.4e-24 118.2 380 26.6
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 2.5e-24 117.5 368 28.3
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 3.2e-24 117.1 541 24.8
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 5.5e-24 116.3 422 25.1
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 5.5e-24 116.3 135 43.0
BcaB01g05328 Brassica carinata HOM05D009880 ORTHO05D004072 2.1e-23 114.4 356 25.6
A03p06280 Brassica napus HOM05D009880 ORTHO05D004072 3.5e-23 113.6 355 25.4
C03p07260 Brassica napus HOM05D009880 ORTHO05D004072 3.5e-23 113.6 355 25.1
BraA03t09959Z Brassica rapa HOM05D009880 ORTHO05D004072 3.5e-23 113.6 355 25.4
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 7.9e-23 112.5 380 25.8
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 1.8e-22 111.3 131 38.2
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 3.0e-22 110.5 341 27.0
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 3.0e-22 110.5 341 27.0
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 8.7e-22 109.0 420 23.6
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 1.5e-21 108.2 368 26.9
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 1.5e-21 108.2 138 39.1
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 1.9e-21 107.8 592 23.6
Carub.0006s1211 Capsella rubella HOM05D009880 ORTHO05D004072 5.7e-21 106.3 366 26.8
AL6G24570 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 7.4e-21 105.9 376 26.1
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 3.7e-20 103.6 163 36.2
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 8.2e-20 102.4 160 35.6
AT5G13920 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 1.1e-19 102.1 128 38.3
MSTRG.25687 Avicennia marina HOM05D007742 ORTHO05D004072 1.1e-19 102.1 361 25.2
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 1.4e-19 101.7 160 35.6
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 1.8e-19 101.3 172 37.8
AT1G54930 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 2.4e-19 100.9 377 27.1
CSS0018935 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 4.1e-19 100.1 170 41.8
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 4.1e-19 100.1 163 35.6
Ah.03g136430 Amaranthus hybridus HOM05D007742 ORTHO05D004072 5.3e-19 99.8 149 36.9
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 4.5e-18 96.7 139 36.7
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 1.0e-17 95.5 127 37.8
Ciclev10014788m.g Citrus clementina HOM05D007742 ORTHO05D004072 1.0e-17 95.5 132 36.4
CARHR199510 Cardamine hirsuta HOM05D009880 ORTHO05D004072 1.7e-17 94.7 370 25.7
PGR142G3827 Punica granatum HOM05D007742 ORTHO05D004072 2.2e-17 94.4 176 31.8
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 3.8e-17 93.6 136 36.0
Duzib138G1433 Durio zibethinus HOM05D018961 ORTHO05D004072 6.5e-17 92.8 133 42.9
Carub.0002s0844 Capsella rubella HOM05D009880 ORTHO05D004072 1.9e-16 91.3 387 25.6
QL06p043010 Quercus lobata HOM05D000529 ORTHO05D000472 1.9e-16 91.3 100 54.0
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 3.2e-16 90.5 149 32.2
Duzib138G0881 Durio zibethinus HOM05D007742 ORTHO05D004072 4.2e-16 90.1 167 33.5
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 1.2e-15 88.6 120 38.3
CSS0026315 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 2.7e-15 87.4 187 33.2
TPR.G26439 Trifolium pratense HOM05D007742 ORTHO05D004072 3.6e-15 87.0 149 36.9
Migut.A00628 Erythranthe guttata HOM05D007742 ORTHO05D004072 6.1e-15 86.3 176 32.4
Medtr4g082160 Medicago truncatula HOM05D007742 ORTHO05D004072 6.1e-15 86.3 109 39.4
Aa31LG2G11730 Aethionema arabicum HOM05D009880 ORTHO05D004072 7.9e-15 85.9 103 38.8
Rhsim08G0038200 Rhododendron simsii HOM05D000001 ORTHO05D000003 1.0e-14 85.5 179 35.2
arahy.Tifrunner.gnm1.ann1.T3P4RE Arachis hypogaea HOM05D007742 ORTHO05D004072 1.8e-14 84.7 126 38.9
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 1.8e-14 84.7 70 47.1
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 1.8e-14 84.7 130 36.9
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 3.0e-14 84.0 131 35.9
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 3.0e-14 84.0 130 36.9
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 3.0e-14 84.0 133 35.3
CSS0036601 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 3.9e-14 83.6 172 39.0
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 3.9e-14 83.6 135 31.1
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 3.9e-14 83.6 130 33.8
arahy.Tifrunner.gnm1.ann1.U642C8 Arachis hypogaea HOM05D007742 ORTHO05D004072 5.1e-14 83.2 126 38.1
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 1.1e-13 82.0 137 31.4
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 1.1e-13 82.0 130 33.1
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 1.1e-13 82.0 130 33.8
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 1.1e-13 82.0 129 34.1
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 1.5e-13 81.6 75 45.3
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 1.5e-13 81.6 138 34.1
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 1.5e-13 81.6 139 32.4
Gohir.A07G082400 Gossypium hirsutum HOM05D018961 ORTHO05D004072 2.0e-13 81.3 174 32.2
Gohir.A07G168700 Gossypium hirsutum HOM05D018961 ORTHO05D004072 2.0e-13 81.3 165 35.2
VMungo0464G0864 Vigna mungo HOM05D007742 ORTHO05D004072 2.0e-13 81.3 179 31.3
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 2.0e-13 81.3 152 33.6
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 2.5e-13 80.9 145 32.4
Gorai.001G196100 Gossypium raimondii HOM05D018961 ORTHO05D004072 4.3e-13 80.1 137 36.5
Lalb_Chr22g0359781 Lupinus albus HOM05D007742 ORTHO05D004072 4.3e-13 80.1 161 29.2
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 7.4e-13 79.3 140 31.4
Phvul.001G079300 Phaseolus vulgaris HOM05D007742 ORTHO05D004072 7.4e-13 79.3 163 29.4
VMungo1383G1777 Vigna mungo HOM05D007742 ORTHO05D004072 7.4e-13 79.3 179 31.8
Lj7A618T68 Lonicera japonica HOM05D007742 ORTHO05D004072 1.7e-12 78.2 136 40.4
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 1.7e-12 78.2 129 34.9
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 2.2e-12 77.8 115 36.5
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 2.2e-12 77.8 134 32.1
Sabra09G0085900 Salix brachista HOM05D007742 ORTHO05D004072 2.2e-12 77.8 170 34.7
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 3.7e-12 77.0 126 33.3
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 4.8e-12 76.6 131 30.5
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 8.2e-12 75.9 62 48.4
CSS0000950 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 8.2e-12 75.9 138 34.1
QL05p088131 Quercus lobata HOM05D000176 ORTHO05D000106 8.2e-12 75.9 77 55.8
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 8.2e-12 75.9 129 33.3
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 1.1e-11 75.5 133 33.8
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 1.1e-11 75.5 145 32.4
Gorai.001G095300 Gossypium raimondii HOM05D018961 ORTHO05D004072 1.4e-11 75.1 147 31.3
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 1.8e-11 74.7 146 34.9
PGSC0003DMG400020234 Solanum tuberosum HOM05D007742 ORTHO05D004072 2.4e-11 74.3 143 35.0
Gohir.D07G088900 Gossypium hirsutum HOM05D018961 ORTHO05D004072 3.1e-11 73.9 147 31.3
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 5.3e-11 73.2 126 34.1
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 6.9e-11 72.8 99 37.4
Psat3g092040 Pisum sativum HOM05D007742 ORTHO05D004072 6.9e-11 72.8 152 33.6
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 9.1e-11 72.4 97 38.1
CANSAT64G0751 Cannabis sativa HOM05D007742 ORTHO05D004072 1.5e-10 71.6 159 31.4
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 1.5e-10 71.6 144 27.8
QL04p036347 Quercus lobata HOM05D007742 ORTHO05D004072 1.5e-10 71.6 82 52.4
QL04p088703 Quercus lobata HOM05D007742 ORTHO05D004072 1.5e-10 71.6 82 52.4
QL11p043352 Quercus lobata HOM05D007742 ORTHO05D004072 1.5e-10 71.6 82 52.4
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 2.0e-10 71.2 100 37.0
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 2.0e-10 71.2 103 34.0
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 2.6e-10 70.9 108 35.2
Lj7P618T64 Lonicera japonica HOM05D007742 ORTHO05D004072 3.4e-10 70.5 161 32.3
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 5.9e-10 69.7 108 34.3
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 7.7e-10 69.3 95 36.8
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 7.7e-10 69.3 147 25.9
CSS0006654 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 1.3e-09 68.6 64 42.2
CSS0017436 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 1.3e-09 68.6 64 42.2
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 1.3e-09 68.6 90 36.7
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 1.7e-09 68.2 108 34.3
ATR0582G234 Amborella trichopoda HOM05D007742 ORTHO05D004072 3.8e-09 67.0 96 37.5
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 3.8e-09 67.0 96 33.3
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 6.5e-09 66.2 114 32.5
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 6.5e-09 66.2 114 32.5
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 6.5e-09 66.2 95 36.8
Peaxi162Scf00420g00831 Petunia axillaris HOM05D007742 ORTHO05D004072 8.5e-09 65.9 114 34.2
Glyma.19G105400 Glycine max HOM05D007742 ORTHO05D004072 1.4e-08 65.1 165 29.7
SGA_v2.0_scaffold305G47989 Striga asiatica HOM05D007742 ORTHO05D004072 1.4e-08 65.1 86 39.5
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 1.9e-08 64.7 100 34.0
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 1.9e-08 64.7 100 34.0
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 1.9e-08 64.7 158 24.1
Dinv27641 Davidia involucrata HOM05D007742 ORTHO05D004072 2.5e-08 64.3 117 31.6
Rhsim04G0137500 Rhododendron simsii HOM05D007742 ORTHO05D010160 2.5e-08 64.3 153 32.0
COL.COLO4_13391 Corchorus olitorius HOM05D018961 ORTHO05D004072 3.2e-08 63.9 97 35.1
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 4.2e-08 63.5 157 26.1
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 4.2e-08 63.5 129 31.0
Ah.01g013150 Amaranthus hybridus HOM05D008124 ORTHO05D004072 2.1e-07 61.2 74 37.8
Ca_08225_v3 Cicer arietinum L. HOM05D007742 ORTHO05D004072 2.7e-07 60.8 143 30.8
Thhalv10003618m.g Eutrema salsugineum HOM05D002182 ORTHO05D004671 2.7e-07 60.8 88 36.4
Glyma.16G046800 Glycine max HOM05D007742 ORTHO05D004072 2.7e-07 60.8 337 22.3
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 3.6e-07 60.5 111 31.5
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 4.7e-07 60.1 132 29.5
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 7.9e-07 59.3 127 28.3
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 7.9e-07 59.3 94 31.9
Aqoxy5G02289 Aquilegia oxysepala HOM05D002182 ORTHO05D004671 1.0e-06 58.9 78 34.6
RcHm_v2.0_Chr2g0122231 Rosa chinensis HOM05D002182 ORTHO05D004671 2.3e-06 57.8 152 25.7
MBI02_g36352_MAGBIO Magnolia biondii HOM05D008124 ORTHO05D004072 3.9e-06 57.0 92 33.7
arahy.Tifrunner.gnm1.ann1.H02ZFL Arachis hypogaea HOM05D007742 ORTHO05D004072 8.8e-06 55.8 160 30.0
arahy.Tifrunner.gnm1.ann1.L07F2C Arachis hypogaea HOM05D007742 ORTHO05D004072 8.8e-06 55.8 165 30.9
Cfa002178 Carpinus fangiana HOM05D002182 ORTHO05D004671 8.8e-06 55.8 152 28.9


User provided reference genes

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