Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 0.0e+00 1276.5 633 100.0
QL02p069122 Quercus lobata HOM05D007742 ORTHO05D004072 2.0e-254 882.5 499 91.2
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 9.5e-193 677.6 628 61.3
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 4.8e-176 622.1 638 55.8
Haze_14967 Corylus avellana HOM05D007742 ORTHO05D004072 1.4e-167 594.0 637 54.0
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 9.6e-161 571.2 624 51.9
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 2.9e-141 506.5 578 52.9
Prupe.3G314400 Prunus persica HOM05D007742 ORTHO05D004072 3.5e-110 403.3 640 41.6
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 7.8e-86 322.4 631 36.5
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 1.2e-81 308.5 661 34.2
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 3.6e-75 287.0 663 34.4
Manes.04G094400 Manihot esculenta HOM05D007742 ORTHO05D004072 6.2e-75 286.2 632 33.4
Ciclev10014788m.g Citrus clementina HOM05D007742 ORTHO05D004072 2.0e-73 281.2 564 35.5
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 1.7e-72 278.1 663 33.5
Duzib138G0881 Durio zibethinus HOM05D007742 ORTHO05D004072 6.6e-69 266.2 606 31.5
QL09p009056 Quercus lobata HOM05D004225 ORTHO05D004728 1.7e-64 251.5 262 59.2
Hma1.2p1_0868F.1_g230420 Hydrangea macrophylla HOM05D007742 ORTHO05D004072 6.4e-64 249.6 529 35.2
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 2.0e-57 228.0 651 29.6
VMungo0464G0864 Vigna mungo HOM05D007742 ORTHO05D004072 3.4e-57 227.3 637 31.6
PGR142G3827 Punica granatum HOM05D007742 ORTHO05D004072 7.1e-55 219.5 674 28.2
Phvul.001G079300 Phaseolus vulgaris HOM05D007742 ORTHO05D004072 4.6e-54 216.9 629 28.3
VMungo1383G1777 Vigna mungo HOM05D007742 ORTHO05D004072 6.0e-54 216.5 639 28.6
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.3e-53 215.3 637 29.5
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 1.8e-53 214.9 610 30.3
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 3.0e-53 214.2 637 29.4
Glyma.19G105400 Glycine max HOM05D007742 ORTHO05D004072 2.1e-51 208.0 636 28.1
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 5.3e-50 203.4 569 30.4
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 5.3e-50 203.4 628 29.6
QL04p036347 Quercus lobata HOM05D007742 ORTHO05D004072 3.4e-49 200.7 215 55.8
arahy.Tifrunner.gnm1.ann1.L07F2C Arachis hypogaea HOM05D007742 ORTHO05D004072 1.3e-48 198.7 603 29.0
QL04p088703 Quercus lobata HOM05D007742 ORTHO05D004072 1.3e-48 198.7 181 62.4
QL11p043352 Quercus lobata HOM05D007742 ORTHO05D004072 1.3e-48 198.7 181 61.9
Rhsim08G0038200 Rhododendron simsii HOM05D000001 ORTHO05D000003 9.3e-47 192.6 705 27.5
arahy.Tifrunner.gnm1.ann1.H02ZFL Arachis hypogaea HOM05D007742 ORTHO05D004072 5.1e-45 186.8 625 28.2
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 5.1e-45 186.8 636 28.5
Lalb_Chr22g0359781 Lupinus albus HOM05D007742 ORTHO05D004072 1.6e-43 181.8 653 26.6
Migut.A00628 Erythranthe guttata HOM05D007742 ORTHO05D004072 1.5e-41 175.3 573 28.3
CSS0036601 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 2.2e-40 171.4 507 32.3
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 3.2e-39 167.5 187 45.5
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 3.9e-37 160.6 164 46.3
CSS0018935 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 1.5e-36 158.7 480 31.0
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 5.7e-36 156.8 581 26.3
Psat3g092040 Pisum sativum HOM05D007742 ORTHO05D004072 1.8e-34 151.8 638 26.6
Gorai.001G196100 Gossypium raimondii HOM05D018961 ORTHO05D004072 7.6e-33 146.4 599 27.0
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 1.0e-32 146.0 147 42.2
QL06p043010 Quercus lobata HOM05D000529 ORTHO05D000472 1.0e-32 146.0 143 59.4
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 5.0e-32 143.7 542 24.5
Duzib138G1433 Durio zibethinus HOM05D018961 ORTHO05D004072 3.2e-31 141.0 310 33.2
Gohir.A07G168700 Gossypium hirsutum HOM05D018961 ORTHO05D004072 1.2e-30 139.0 597 27.0
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 2.1e-30 138.3 157 42.0
AT5G13920 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 6.1e-30 136.7 161 41.6
arahy.Tifrunner.gnm1.ann1.T3P4RE Arachis hypogaea HOM05D007742 ORTHO05D004072 6.1e-30 136.7 645 26.0
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 7.9e-30 136.3 156 39.7
arahy.Tifrunner.gnm1.ann1.U642C8 Arachis hypogaea HOM05D007742 ORTHO05D004072 5.1e-29 133.7 641 26.2
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 5.1e-29 133.7 153 40.5
AL6G24570 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 1.1e-28 132.5 157 42.0
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.1e-28 132.5 235 34.0
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 1.5e-28 132.1 153 41.2
Aa31LG2G11790 Aethionema arabicum HOM05D009880 ORTHO05D004072 2.5e-28 131.3 576 24.5
Carub.0006s1211 Capsella rubella HOM05D009880 ORTHO05D004072 3.3e-28 131.0 154 40.3
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 3.3e-28 131.0 173 40.5
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 4.3e-28 130.6 149 41.6
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 5.7e-28 130.2 173 40.5
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 7.4e-28 129.8 148 41.2
BcaB07g31107 Brassica carinata HOM05D009880 ORTHO05D004072 3.7e-27 127.5 149 41.6
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 3.7e-27 127.5 148 41.9
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 3.7e-27 127.5 148 41.9
A03p06280 Brassica napus HOM05D009880 ORTHO05D004072 6.3e-27 126.7 157 39.5
Ah.03g136430 Amaranthus hybridus HOM05D007742 ORTHO05D004072 8.2e-27 126.3 142 43.0
BraA03t09959Z Brassica rapa HOM05D009880 ORTHO05D004072 8.2e-27 126.3 157 39.5
BcaB01g05328 Brassica carinata HOM05D009880 ORTHO05D004072 2.4e-26 124.8 157 39.5
C03p07260 Brassica napus HOM05D009880 ORTHO05D004072 2.4e-26 124.8 157 39.5
Sabra09G0085900 Salix brachista HOM05D007742 ORTHO05D004072 2.4e-26 124.8 530 27.2
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 3.1e-26 124.4 149 42.3
QL03p031079 Quercus lobata HOM05D003851 ORTHO05D004072 5.3e-26 123.6 125 55.2
QL03p031464 Quercus lobata HOM05D003851 ORTHO05D004072 5.3e-26 123.6 125 55.2
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 6.9e-26 123.2 148 41.2
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 1.5e-25 122.1 164 36.6
MSTRG.25687 Avicennia marina HOM05D007742 ORTHO05D004072 1.5e-25 122.1 497 26.6
CARHR199510 Cardamine hirsuta HOM05D009880 ORTHO05D004072 2.6e-25 121.3 148 40.5
Ca_08225_v3 Cicer arietinum L. HOM05D007742 ORTHO05D004072 7.7e-25 119.8 549 25.5
Lj7A618T68 Lonicera japonica HOM05D007742 ORTHO05D004072 7.7e-25 119.8 255 35.3
QL11p043358 Quercus lobata HOM05D007742 ORTHO05D004072 3.8e-24 117.5 130 52.3
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 3.8e-24 117.5 560 25.2
CANSAT64G0751 Cannabis sativa HOM05D007742 ORTHO05D004072 8.5e-24 116.3 549 25.5
Hund19588 Selenicereus undatus HOM05D007742 ORTHO05D004072 3.9e-21 107.5 550 25.3
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 1.5e-20 105.5 145 37.2
AT1G54930 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 2.0e-20 105.1 572 23.1
Medtr4g082160 Medicago truncatula HOM05D007742 ORTHO05D004072 2.0e-20 105.1 110 43.6
AUR62037803 Chenopodium quinoa HOM05D007742 ORTHO05D004072 3.3e-20 104.4 148 33.8
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 5.7e-20 103.6 147 36.1
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 9.7e-20 102.8 157 32.5
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 1.7e-19 102.1 145 36.6
TPR.G26439 Trifolium pratense HOM05D007742 ORTHO05D004072 2.2e-19 101.7 660 23.3
Gohir.A07G082400 Gossypium hirsutum HOM05D018961 ORTHO05D004072 2.8e-19 101.3 175 35.4
vmacro18397 Vaccinium macrocarpon HOM05D007742 ORTHO05D004072 2.8e-19 101.3 518 25.9
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 3.7e-19 100.9 159 32.7
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 4.8e-19 100.5 105 43.8
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 6.3e-19 100.1 166 33.7
Peaxi162Scf00420g00831 Petunia axillaris HOM05D007742 ORTHO05D004072 8.2e-19 99.8 510 26.3
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 1.1e-18 99.4 155 32.9
Carub.0002s0844 Capsella rubella HOM05D009880 ORTHO05D004072 1.1e-18 99.4 144 35.4
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 1.4e-18 99.0 176 30.7
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 1.4e-18 99.0 147 34.0
CSS0026315 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 1.8e-18 98.6 187 33.7
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 1.8e-18 98.6 131 38.9
Gorai.001G095300 Gossypium raimondii HOM05D018961 ORTHO05D004072 1.8e-18 98.6 147 36.7
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 2.4e-18 98.2 170 34.1
Gohir.D07G088900 Gossypium hirsutum HOM05D018961 ORTHO05D004072 4.1e-18 97.4 147 36.7
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 6.9e-18 96.7 130 36.9
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 9.1e-18 96.3 185 31.9
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 1.2e-17 95.9 131 39.7
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 1.2e-17 95.9 144 36.8
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 1.5e-17 95.5 205 29.8
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 1.5e-17 95.5 160 34.4
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 2.0e-17 95.1 131 39.7
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 3.4e-17 94.4 101 38.6
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 5.9e-17 93.6 155 34.2
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 1.3e-16 92.4 145 34.5
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 1.7e-16 92.0 151 33.8
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 1.7e-16 92.0 145 35.2
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 2.2e-16 91.7 116 38.8
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 2.2e-16 91.7 149 36.9
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 2.9e-16 91.3 113 40.7
EL10As2g23251 Beta vulgaris HOM05D007742 ORTHO05D004072 2.9e-16 91.3 167 32.3
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 2.9e-16 91.3 141 33.3
Aa31LG2G11730 Aethionema arabicum HOM05D009880 ORTHO05D004072 3.8e-16 90.9 85 47.1
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 3.8e-16 90.9 116 38.8
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 3.8e-16 90.9 159 30.8
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 5.0e-16 90.5 142 35.9
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 1.9e-15 88.6 162 29.6
SGA_v2.0_scaffold305G47989 Striga asiatica HOM05D007742 ORTHO05D004072 3.2e-15 87.8 111 39.6
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 9.4e-15 86.3 127 36.2
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 9.4e-15 86.3 127 36.2
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 9.4e-15 86.3 111 37.8
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 1.2e-14 85.9 86 46.5
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 1.6e-14 85.5 150 34.7
TWI60G0051 Tripterygium wilfordii HOM05D008124 ORTHO05D004072 2.1e-14 85.1 126 34.1
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 4.7e-14 84.0 173 27.7
COL.COLO4_13391 Corchorus olitorius HOM05D018961 ORTHO05D004072 7.9e-14 83.2 166 30.1
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 1.4e-13 82.4 115 40.0
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 3.0e-13 81.3 113 37.2
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 3.0e-13 81.3 113 37.2
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 3.9e-13 80.9 106 41.5
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 3.9e-13 80.9 150 32.7
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 3.9e-13 80.9 126 35.7
CSS0000950 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 6.7e-13 80.1 142 34.5
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 6.7e-13 80.1 117 34.2
Rhsim04G0137500 Rhododendron simsii HOM05D007742 ORTHO05D010160 8.8e-13 79.7 219 33.3
Sabra16G0201300 Salix brachista HOM05D008124 ORTHO05D004072 1.5e-12 79.0 153 30.7
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 2.6e-12 78.2 138 31.2
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 2.6e-12 78.2 103 40.8
QL05p088131 Quercus lobata HOM05D000176 ORTHO05D000106 2.6e-12 78.2 77 58.4
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 4.4e-12 77.4 125 33.6
MBI02_g36352_MAGBIO Magnolia biondii HOM05D008124 ORTHO05D004072 4.4e-12 77.4 129 31.0
Potri.001G318100 Populus trichocarpa HOM05D008124 ORTHO05D004072 5.7e-12 77.0 114 35.1
Lj7P618T64 Lonicera japonica HOM05D007742 ORTHO05D004072 7.4e-12 76.6 167 33.5
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 6.3e-11 73.6 113 34.5
PGSC0003DMG400020234 Solanum tuberosum HOM05D007742 ORTHO05D004072 1.1e-10 72.8 158 34.8
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 1.8e-10 72.0 93 36.6
Ah.01g013150 Amaranthus hybridus HOM05D008124 ORTHO05D004072 4.1e-10 70.9 98 36.7
GSVIVG01032966001 Vitis vinifera HOM05D007742 ORTHO05D004072 5.3e-10 70.5 92 38.0
FAN02G4088 Fragaria x ananassa HOM05D008124 ORTHO05D004072 9.1e-10 69.7 123 30.1
AagrBONN_evm.TU.Sc2ySwM_228.5614 Anthoceros agrestis HOM05D008124 ORTHO05D004072 2.6e-09 68.2 125 30.4
CSS0006654 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 4.5e-09 67.4 66 42.4
CSS0017436 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 4.5e-09 67.4 66 42.4
Dinv27641 Davidia involucrata HOM05D007742 ORTHO05D004072 1.0e-08 66.2 117 32.5
ATR0582G234 Amborella trichopoda HOM05D007742 ORTHO05D004072 1.3e-08 65.9 96 37.5
THA.LOC104818422 Tarenaya hassleriana HOM05D002182 ORTHO05D004671 1.3e-08 65.9 171 26.3
TWI79G1433 Tripterygium wilfordii HOM05D002182 ORTHO05D004671 2.9e-08 64.7 162 28.4
Thhalv10003618m.g Eutrema salsugineum HOM05D002182 ORTHO05D004671 3.8e-08 64.3 92 35.9
Gohir.A06G110400 Gossypium hirsutum HOM05D008124 ORTHO05D004072 5.0e-08 63.9 144 31.2
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 1.1e-07 62.8 103 31.1
Cfa002178 Carpinus fangiana HOM05D002182 ORTHO05D004671 4.2e-07 60.8 156 27.6
Glyma.16G046800 Glycine max HOM05D007742 ORTHO05D004072 4.2e-07 60.8 106 34.9
Aqoxy5G02289 Aquilegia oxysepala HOM05D002182 ORTHO05D004671 1.2e-06 59.3 106 34.0
EL10Ac4g09621 Beta vulgaris HOM05D002182 ORTHO05D004671 1.6e-06 58.9 117 32.5
CiPaw.04G079900 Carya illinoinensis HOM05D002182 ORTHO05D004671 2.1e-06 58.5 156 25.6
CSS0044588 Camellia sinensis var. sinensis HOM05D001357 ORTHO05D001224 2.7e-06 58.2 58 46.6
CSS0039848 Camellia sinensis var. sinensis HOM05D001357 ORTHO05D001224 4.7e-06 57.4 58 46.6
C02p63020 Brassica napus HOM05D002182 ORTHO05D017531 6.1e-06 57.0 192 25.0
BraA02t09226Z Brassica rapa HOM05D002182 ORTHO05D004671 8.0e-06 56.6 92 31.5


User provided reference genes

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