Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p062309 Quercus lobata HOM05D006920 ORTHO05D005895 0.0e+00 1810.4 1023 100.0
Cfa003067 Carpinus fangiana HOM05D006920 ORTHO05D005895 1.8e-289 999.6 1035 62.8
Haze_25928 Corylus avellana HOM05D006920 ORTHO05D005895 8.5e-276 954.1 1035 61.3
CiPaw.03G213600 Carya illinoinensis HOM05D006920 ORTHO05D005895 1.7e-244 850.1 1034 56.2
Prupe.7G207100 Prunus persica HOM05D006920 ORTHO05D005895 3.4e-147 526.9 1008 42.7
Atru.chr7.1617 Acer truncatum HOM05D006920 ORTHO05D005895 4.6e-120 436.8 1045 39.2
RcHm_v2.0_Chr3g0459471 Rosa chinensis HOM05D006920 ORTHO05D005895 1.3e-119 435.3 1041 38.5
MD15G1209300 Malus domestica HOM05D006920 ORTHO05D005895 1.6e-109 401.7 817 39.5
TWI63G0676 Tripterygium wilfordii HOM05D006920 ORTHO05D005895 9.3e-105 386.0 1010 36.3
CANSAT56G3092 Cannabis sativa HOM05D006920 ORTHO05D005895 8.7e-103 379.4 1039 36.2
Ciclev10007413m.g Citrus clementina HOM05D006920 ORTHO05D005895 9.6e-102 375.9 994 36.8
RcHm_v2.0_Chr2g0093651 Rosa chinensis HOM05D006920 ORTHO05D005895 3.6e-101 374.0 1039 36.1
FvH4_1g07770 Fragaria vesca HOM05D006920 ORTHO05D005895 7.6e-99 366.3 1032 37.7
FAN28G2753 Fragaria x ananassa HOM05D006920 ORTHO05D005895 2.7e-96 357.8 1032 37.9
FAN26G1238 Fragaria x ananassa HOM05D006920 ORTHO05D005895 6.0e-96 356.7 1032 37.5
FAN23G0431 Fragaria x ananassa HOM05D006920 ORTHO05D005895 3.9e-95 354.0 1032 38.0
FAN26G3372 Fragaria x ananassa HOM05D006920 ORTHO05D005895 5.1e-95 353.6 1033 37.6
Potri.006G148400 Populus trichocarpa HOM05D006920 ORTHO05D005895 3.7e-93 347.4 1056 35.7
GSVIVG01015184001 Vitis vinifera HOM05D006920 ORTHO05D005895 9.9e-91 339.3 688 45.5
Thecc.09G086800 Theobroma cacao HOM05D006920 ORTHO05D005895 9.3e-89 332.8 1099 33.5
Sabra06G0117400 Salix brachista HOM05D006920 ORTHO05D005895 1.8e-84 318.5 960 36.2
TAR383G0297 Trochodendron aralioides HOM05D006920 ORTHO05D005895 4.5e-83 313.9 1035 34.3
Duzib150G1610 Durio zibethinus HOM05D006920 ORTHO05D005895 9.3e-81 306.2 1076 32.3
Manes.01G178200 Manihot esculenta HOM05D006920 ORTHO05D005895 1.3e-74 285.8 945 35.2
Dinv42334 Davidia involucrata HOM05D006920 ORTHO05D005895 7.9e-72 276.6 639 39.7
FAN19G0513 Fragaria x ananassa HOM05D006920 ORTHO05D005895 5.5e-65 253.8 792 33.3
ClCG11G016050 Citrullus lanatus HOM05D006920 ORTHO05D005895 9.4e-65 253.1 1058 31.1
Gorai.009G032200 Gossypium raimondii HOM05D006920 ORTHO05D005895 1.2e-64 252.7 1129 31.2
CsaV3_4G027920 Cucumis sativus L. HOM05D006920 ORTHO05D005895 1.5e-62 245.7 1021 31.5
Hma1.2p1_0169F.1_g074930 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 2.2e-61 241.9 1034 31.7
COL.COLO4_18185 Corchorus olitorius HOM05D006920 ORTHO05D005895 8.2e-61 240.0 1011 30.4
Actinidia25244 Actinidia chinensis HOM05D006920 ORTHO05D005895 3.1e-60 238.0 1026 30.5
Dinv36779 Davidia involucrata HOM05D006920 ORTHO05D005895 1.4e-57 229.2 535 40.0
Oeu064585.1 Olea europaea HOM05D006920 ORTHO05D005895 4.7e-56 224.2 1031 29.7
Nn6g35509 Nelumbo nucifera HOM05D006920 ORTHO05D005895 1.8e-55 222.2 1075 30.5
TPR.G14423 Trifolium pratense HOM05D006920 ORTHO05D005895 3.9e-55 221.1 821 30.7
Gohir.D05G032000 Gossypium hirsutum HOM05D006920 ORTHO05D005895 6.7e-55 220.3 1015 31.5
Gohir.A05G030600 Gossypium hirsutum HOM05D006920 ORTHO05D005895 1.1e-54 219.5 1013 31.8
Cc06_g11560 Coffea canephora HOM05D006920 ORTHO05D005895 1.5e-49 202.6 992 28.8
DCAR_031337 Daucus carota HOM05D006920 ORTHO05D005895 3.2e-49 201.4 774 33.6
PGR142G4106 Punica granatum HOM05D006920 ORTHO05D005895 4.7e-48 197.6 1053 29.2
Medtr5g096500 Medicago truncatula HOM05D006920 ORTHO05D005895 3.0e-47 194.9 997 29.6
Sed0019505 Sechium edule HOM05D006920 ORTHO05D005895 2.6e-46 191.8 1021 29.6
DCAR_015050 Daucus carota HOM05D006920 ORTHO05D005895 3.3e-46 191.4 747 31.7
Rhsim05G0018400 Rhododendron simsii HOM05D006920 ORTHO05D005895 1.1e-44 186.4 1121 28.7
MELO3C010521.2 Cucumis melo HOM05D006920 ORTHO05D005895 4.5e-43 181.0 1056 27.9
Nitab4.5_0005104g0050 Nicotiana tabacum HOM05D006920 ORTHO05D005895 2.9e-42 178.3 1043 27.7
Hma1.2p1_0476F.1_g160830 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 6.5e-42 177.2 621 34.9
vmacro17256 Vaccinium macrocarpon HOM05D006920 ORTHO05D005895 3.2e-41 174.9 814 31.0
Nitab4.5_0008077g0010 Nicotiana tabacum HOM05D006920 ORTHO05D005895 4.2e-41 174.5 736 30.3
Lj6g0023447 Lotus japonicus HOM05D006920 ORTHO05D005895 1.2e-40 172.9 1002 30.6
Sed0003269 Sechium edule HOM05D006920 ORTHO05D005895 1.5e-38 166.0 1036 28.2
Eucgr.C01704 Eucalyptus grandis HOM05D006920 ORTHO05D005895 1.1e-36 159.8 469 38.2
Glyma.14G213000 Glycine max HOM05D006920 ORTHO05D005895 7.0e-36 157.1 633 34.0
Psat5g132560 Pisum sativum HOM05D006920 ORTHO05D005895 7.0e-36 157.1 700 32.9
Ca_12179_v3 Cicer arietinum L. HOM05D006920 ORTHO05D005895 3.8e-34 151.4 996 26.3
arahy.Tifrunner.gnm1.ann1.50MPSE Arachis hypogaea HOM05D006920 ORTHO05D005895 8.6e-34 150.2 991 28.8
MSTRG.19500 Avicennia marina HOM05D006920 ORTHO05D005895 4.2e-33 147.9 854 28.3
Peaxi162Scf00028g00415 Petunia axillaris HOM05D006920 ORTHO05D005895 2.8e-32 145.2 729 28.9
VMungo0331G1985 Vigna mungo HOM05D006920 ORTHO05D005895 1.0e-31 143.3 614 33.1
Oeu000320.3 Olea europaea HOM05D006920 ORTHO05D005895 1.4e-31 142.9 643 27.2
Lalb_Chr25g0278561 Lupinus albus HOM05D006920 ORTHO05D005895 3.0e-31 141.7 426 40.6
SalBow6G1737 Salvia bowleyana HOM05D006920 ORTHO05D005895 3.0e-31 141.7 666 31.2
Phvul.010G094400 Phaseolus vulgaris HOM05D006920 ORTHO05D005895 1.1e-28 133.3 431 36.7
Lj3g0019860 Lotus japonicus HOM05D006920 ORTHO05D005895 3.1e-28 131.7 427 38.2
Medtr3g053340 Medicago truncatula HOM05D006920 ORTHO05D005895 1.3e-26 126.3 994 27.1
CSS0016721 Camellia sinensis var. sinensis HOM05D037884 ORTHO05D005895 2.5e-25 122.1 392 34.4
CSS0038644 Camellia sinensis var. sinensis HOM05D037884 ORTHO05D005895 2.5e-25 122.1 392 34.4
Lj4A292T33 Lonicera japonica HOM05D006920 ORTHO05D005895 4.3e-25 121.3 468 40.8
Migut.J00581 Erythranthe guttata HOM05D006920 ORTHO05D005895 4.0e-23 114.8 622 29.7
arahy.Tifrunner.gnm1.ann1.IGMF9F Arachis hypogaea HOM05D006920 ORTHO05D005895 1.5e-22 112.8 828 28.1
CAN.G610.81 Capsicum annuum HOM05D006920 ORTHO05D005895 4.9e-21 107.8 753 29.3
CSS0027095 Camellia sinensis var. sinensis HOM05D037884 ORTHO05D005895 6.4e-21 107.5 393 31.8
EL10Ac8g19187 Beta vulgaris HOM05D036879 ORTHO05D005895 9.2e-20 103.6 479 33.8
ECA233G4205 Erigeron canadensis HOM05D006920 ORTHO05D005895 9.2e-20 103.6 535 32.5
MBI04_g34755_MAGBIO Magnolia biondii HOM05D006920 ORTHO05D005895 1.2e-19 103.2 260 41.5
Sp6g18630 Schrenkiella parvula HOM05D010535 ORTHO05D005895 1.2e-19 103.2 895 25.9
Gohir.A10G064850 Gossypium hirsutum HOM05D006920 ORTHO05D005895 4.6e-19 101.3 517 28.4
Hund06669 Selenicereus undatus HOM05D006920 ORTHO05D005895 4.6e-19 101.3 373 34.3
PGSC0003DMG400014565 Solanum tuberosum HOM05D006920 ORTHO05D005895 1.0e-18 100.1 635 28.2
Sc08g0008560 Simmondsia chinensis HOM05D006920 ORTHO05D005895 2.3e-18 99.0 468 25.6
HanXRQChr05g0128971 Helianthus annuus HOM05D006920 ORTHO05D005895 1.9e-17 95.9 311 38.3
Eucgr.C01628 Eucalyptus grandis HOM05D006920 ORTHO05D005895 3.3e-17 95.1 365 30.4
SGA_v2.0_scaffold4G02308 Striga asiatica HOM05D006920 ORTHO05D005895 4.7e-16 91.3 773 26.1
HanXRQChr03g0060321 Helianthus annuus HOM05D006920 ORTHO05D005895 6.2e-16 90.9 311 37.9
AUR62033943 Chenopodium quinoa HOM05D036879 ORTHO05D005895 8.0e-16 90.5 438 29.0
Cpa.g.sc28.161 Carica papaya HOM05D006920 ORTHO05D005895 3.1e-15 88.6 397 28.0
PSO063G3291 Papaver somniferum HOM05D006920 ORTHO05D005895 2.0e-14 85.9 203 42.9
CARHR270670 Cardamine hirsuta HOM05D010535 ORTHO05D005895 2.6e-14 85.5 248 38.3
PSO832G2112 Papaver somniferum HOM05D006920 ORTHO05D005895 2.6e-14 85.5 203 45.3
AT5G56930 Arabidopsis thaliana HOM05D010535 ORTHO05D005895 5.8e-14 84.3 325 31.4
CSS0039023 Camellia sinensis var. sinensis HOM05D041308 ORTHO05D005895 5.8e-14 84.3 565 25.0
Sopen05g005130 Solanum pennellii HOM05D006920 ORTHO05D005895 5.8e-14 84.3 643 26.0
CSS0014816 Camellia sinensis var. sinensis HOM05D041308 ORTHO05D005895 1.3e-13 83.2 568 24.8
unitig_699.g19418 Utricularia gibba HOM05D006920 ORTHO05D005895 1.3e-13 83.2 297 31.3
HPP92_005499 Vanilla planifolia HOM05D006920 ORTHO05D005895 1.3e-13 83.2 614 24.3
AUR62029046 Chenopodium quinoa HOM05D036879 ORTHO05D005895 1.7e-13 82.8 375 28.0
Solyc05g009350.4 Solanum lycopersicum HOM05D006920 ORTHO05D005895 1.7e-13 82.8 363 34.7
AL8G32790 Arabidopsis lyrata HOM05D010535 ORTHO05D005895 2.2e-13 82.4 263 34.2
Carub.0008s1741 Capsella rubella HOM05D010535 ORTHO05D005895 3.7e-13 81.6 263 33.1
Thhalv10012834m.g Eutrema salsugineum HOM05D010535 ORTHO05D005895 4.9e-13 81.3 319 26.3
ECA240G4801 Erigeron canadensis HOM05D006920 ORTHO05D005895 2.4e-12 79.0 48 68.8
Aa31LG11G5970 Aethionema arabicum HOM05D010535 ORTHO05D005895 5.4e-12 77.8 54 64.8
Migut.J00579 Erythranthe guttata HOM05D006920 ORTHO05D005895 9.2e-12 77.0 53 62.3
ATR0178G033 Amborella trichopoda HOM05D006920 ORTHO05D005895 1.2e-11 76.6 195 36.9
Ah.12g064230 Amaranthus hybridus HOM05D006920 ORTHO05D005895 1.6e-11 76.3 52 65.4
PSO384G1468 Papaver somniferum HOM05D006920 ORTHO05D005895 1.6e-11 76.3 333 33.3
Aa31LG11G5930 Aethionema arabicum HOM05D010535 ORTHO05D005895 2.7e-11 75.5 281 29.5
A02p08870 Brassica napus HOM05D010535 ORTHO05D005895 1.0e-10 73.6 261 29.9
CDE04G1224 Ceratophyllum demersum HOM05D006920 ORTHO05D005895 1.0e-10 73.6 463 30.7
Dinv42333 Davidia involucrata HOM05D006920 ORTHO05D005895 1.0e-10 73.6 71 54.9
SEGI_28908 Sequoiadendron giganteum HOM05D006920 ORTHO05D005895 1.0e-10 73.6 52 59.6
Aqoxy7G02156 Aquilegia oxysepala HOM05D006920 ORTHO05D005895 3.0e-10 72.0 232 39.2
HanXRQChr10g0310341 Helianthus annuus HOM05D001214 ORTHO05D001029 1.1e-09 70.1 43 65.1
BcaB05g22299 Brassica carinata HOM05D010535 ORTHO05D005895 2.5e-09 68.9 235 33.2
BraA02t05956Z Brassica rapa HOM05D010535 ORTHO05D005895 1.2e-08 66.6 239 33.9
BcaC03g14196 Brassica carinata HOM05D010535 ORTHO05D005895 6.2e-08 64.3 517 26.7
C02p14780 Brassica napus HOM05D010535 ORTHO05D005895 6.2e-08 64.3 517 26.7
BolC2t07607H Brassica oleracea HOM05D010535 ORTHO05D005895 6.2e-08 64.3 517 26.7
CSS0019085 Camellia sinensis var. sinensis HOM05D041308 ORTHO05D005895 1.4e-07 63.2 549 23.9
Mapoly0131s0021 Marchantia polymorpha HOM05D006920 ORTHO05D005895 6.8e-07 60.8 54 50.0
CDE06G2477 Ceratophyllum demersum HOM05D002968 ORTHO05D005895 8.9e-07 60.5 618 24.8
Zm00001eb160100 Zea mays HOM05D006920 ORTHO05D005895 8.9e-07 60.5 55 58.2
Pp3c19_22680 Physcomitrium patens HOM05D006920 ORTHO05D005895 2.0e-06 59.3 55 52.7
A10p14250 Brassica napus HOM05D010535 ORTHO05D005895 3.4e-06 58.5 49 61.2
BraA10t43516Z Brassica rapa HOM05D010535 ORTHO05D005895 3.4e-06 58.5 49 61.2


User provided reference genes

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