Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p061794 Quercus lobata HOM05D006355 ORTHO05D008284 2.2e-177 625.5 323 100.0
QL02p061767 Quercus lobata HOM05D006355 ORTHO05D008284 8.3e-177 623.6 323 99.7
Haze_25952 Corylus avellana HOM05D006355 ORTHO05D008284 9.3e-136 487.3 322 79.2
Cfa003044 Carpinus fangiana HOM05D006355 ORTHO05D008284 1.3e-132 476.9 322 77.0
CiPaw.03G211000 Carya illinoinensis HOM05D006355 ORTHO05D008284 3.8e-129 465.3 323 75.2
Cpa.g.sc28.115 Carica papaya HOM05D006355 ORTHO05D008284 4.5e-106 388.7 330 65.2
TAR413G0001 Trochodendron aralioides HOM05D006355 ORTHO05D008284 1.7e-105 386.7 328 65.2
Thecc.09G082800 Theobroma cacao HOM05D006355 ORTHO05D008284 1.6e-103 380.2 330 63.0
RcHm_v2.0_Chr2g0094111 Rosa chinensis HOM05D006355 ORTHO05D008284 4.7e-103 378.6 323 64.7
GSVIVG01015151001 Vitis vinifera HOM05D006355 ORTHO05D008284 1.4e-102 377.1 326 64.7
Prupe.7G204300 Prunus persica HOM05D006355 ORTHO05D008284 3.0e-102 375.9 323 65.6
CANSAT56G3969 Cannabis sativa HOM05D006355 ORTHO05D008284 8.8e-102 374.4 325 63.7
Rhsim05G0014000 Rhododendron simsii HOM05D006355 ORTHO05D008284 8.8e-102 374.4 333 61.9
Gohir.D07G013200 Gossypium hirsutum HOM05D006355 ORTHO05D008284 3.3e-101 372.5 323 61.3
CANSAT56G1278 Cannabis sativa HOM05D006355 ORTHO05D008284 4.4e-101 372.1 325 63.4
Hma1.2p1_0672F.1_g200900 Hydrangea macrophylla HOM05D006355 ORTHO05D008284 4.4e-101 372.1 329 62.3
Gorai.001G013900 Gossypium raimondii HOM05D006355 ORTHO05D008284 1.3e-100 370.5 323 61.0
Atru.chr7.1648 Acer truncatum HOM05D006355 ORTHO05D008284 3.7e-100 369.0 330 63.0
Eucgr.C00847 Eucalyptus grandis HOM05D006355 ORTHO05D008284 6.3e-100 368.2 324 61.7
Lj4A288G20 Lonicera japonica HOM05D006355 ORTHO05D008284 6.3e-100 368.2 333 62.8
Gohir.A07G013400 Gossypium hirsutum HOM05D006355 ORTHO05D008284 1.4e-99 367.1 323 60.7
MELO3C004639.2 Cucumis melo HOM05D006355 ORTHO05D008284 2.4e-99 366.3 322 64.6
CsaV3_2G001300 Cucumis sativus L. HOM05D006355 ORTHO05D008284 1.2e-98 364.0 322 64.0
Manes.16G098900 Manihot esculenta HOM05D006355 ORTHO05D008284 1.6e-98 363.6 326 61.7
ClCG11G001610 Citrullus lanatus HOM05D006355 ORTHO05D008284 3.5e-98 362.5 325 63.7
Glyma.17G052200 Glycine max HOM05D006355 ORTHO05D008284 7.2e-96 354.8 324 60.8
Potri.006G146200 Populus trichocarpa HOM05D006355 ORTHO05D008284 1.2e-95 354.0 329 59.6
FAN28G1606 Fragaria x ananassa HOM05D006355 ORTHO05D008284 1.6e-95 353.6 323 61.9
Sed0027351 Sechium edule HOM05D006355 ORTHO05D008284 1.6e-95 353.6 322 62.7
Ciclev10008972m.g Citrus clementina HOM05D006355 ORTHO05D008284 8.0e-95 351.3 322 61.5
Glyma.13G107200 Glycine max HOM05D006355 ORTHO05D008284 1.8e-94 350.1 323 60.1
FvH4_1g08060 Fragaria vesca HOM05D006355 ORTHO05D008284 3.0e-94 349.4 323 61.6
FAN19G0491 Fragaria x ananassa HOM05D006355 ORTHO05D008284 3.0e-94 349.4 323 61.6
Lj4g0004716 Lotus japonicus HOM05D006355 ORTHO05D008284 4.0e-94 349.0 323 60.4
FAN23G1962 Fragaria x ananassa HOM05D006355 ORTHO05D008284 5.2e-94 348.6 323 61.9
FAN26G2768 Fragaria x ananassa HOM05D006355 ORTHO05D008284 2.0e-93 346.7 335 60.3
FAN26G1509 Fragaria x ananassa HOM05D006355 ORTHO05D008284 3.4e-93 345.9 335 60.3
TWI34G0237 Tripterygium wilfordii HOM05D006355 ORTHO05D008284 5.7e-93 345.1 333 58.3
Phvul.003G133900 Phaseolus vulgaris HOM05D006355 ORTHO05D008284 8.3e-92 341.3 324 61.1
Oeu010827.1 Olea europaea HOM05D006355 ORTHO05D008284 1.8e-91 340.1 321 58.9
Peaxi162Scf00494g00027 Petunia axillaris HOM05D006355 ORTHO05D008284 2.4e-91 339.7 328 55.8
Nitab4.5_0002079g0060 Nicotiana tabacum HOM05D006355 ORTHO05D008284 4.1e-91 339.0 327 56.9
arahy.Tifrunner.gnm1.ann1.I94R61 Arachis hypogaea HOM05D006355 ORTHO05D008284 7.0e-91 338.2 324 59.3
CAN.G35.5 Capsicum annuum HOM05D006355 ORTHO05D008284 2.0e-90 336.7 327 56.3
Aqoxy7G01135 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 4.5e-90 335.5 322 58.4
Nn8g38760 Nelumbo nucifera HOM05D006355 ORTHO05D008284 4.5e-90 335.5 326 57.4
Nn8g41302 Nelumbo nucifera HOM05D006355 ORTHO05D008284 4.5e-90 335.5 326 57.4
vmacro17166 Vaccinium macrocarpon HOM05D006355 ORTHO05D008284 1.0e-89 334.3 322 57.5
Solyc07g041020.3 Solanum lycopersicum HOM05D006355 ORTHO05D008284 2.9e-89 332.8 327 56.3
Ca_21303_v3 Cicer arietinum L. HOM05D006355 ORTHO05D008284 2.5e-88 329.7 323 57.3
PGSC0003DMG400014101 Solanum tuberosum HOM05D006355 ORTHO05D008284 7.2e-88 328.2 327 56.3
ECA234G3558 Erigeron canadensis HOM05D006355 ORTHO05D008284 1.2e-87 327.4 322 56.5
Migut.L01533 Erythranthe guttata HOM05D006355 ORTHO05D008284 4.7e-87 325.5 326 55.8
Sabra06G0115400 Salix brachista HOM05D006355 ORTHO05D008284 4.7e-87 325.5 368 52.7
Cc06_g11800 Coffea canephora HOM05D006355 ORTHO05D008284 6.1e-87 325.1 331 55.3
Psat4g016280 Pisum sativum HOM05D006355 ORTHO05D008284 6.1e-87 325.1 325 58.2
MD02G1085300 Malus domestica HOM05D006355 ORTHO05D008284 1.0e-86 324.3 324 57.7
TPR.G9437 Trifolium pratense HOM05D006355 ORTHO05D008284 1.8e-86 323.6 323 57.9
Sopen07g020150 Solanum pennellii HOM05D006355 ORTHO05D008284 3.0e-86 322.8 330 55.2
Duzib168G2189 Durio zibethinus HOM05D006355 ORTHO05D008284 4.0e-86 322.4 323 57.3
DCAR_024718 Daucus carota HOM05D006355 ORTHO05D008284 6.8e-86 321.6 328 56.4
HanXRQChr12g0354551 Helianthus annuus HOM05D006355 ORTHO05D008284 8.9e-86 321.2 322 55.3
Medtr4g125720 Medicago truncatula HOM05D006355 ORTHO05D008284 1.2e-85 320.9 323 57.0
MD15G1212400 Malus domestica HOM05D006355 ORTHO05D008284 7.5e-85 318.2 326 57.7
Nitab4.5_0002842g0040 Nicotiana tabacum HOM05D006355 ORTHO05D008284 9.8e-85 317.8 336 54.5
Hund08706 Selenicereus undatus HOM05D006355 ORTHO05D008284 3.7e-84 315.8 336 57.4
COL.COLO4_18155 Corchorus olitorius HOM05D006355 ORTHO05D008284 7.0e-83 311.6 330 54.8
PGR142G1993 Punica granatum HOM05D006355 ORTHO05D008284 7.0e-83 311.6 325 56.6
Lsat_1_v5_gn_5_143521 Lactuca sativa HOM05D006355 ORTHO05D008284 9.2e-83 311.2 317 54.9
SalBow1G0189 Salvia bowleyana HOM05D006355 ORTHO05D008284 1.7e-81 307.0 325 53.8
SGA_v2.0_scaffold21G09447 Striga asiatica HOM05D006355 ORTHO05D008284 4.3e-80 302.4 322 53.7
Thhalv10022802m.g Eutrema salsugineum HOM05D006355 ORTHO05D008284 1.0e-78 297.7 323 52.9
Lalb_Chr12g0199961 Lupinus albus HOM05D006355 ORTHO05D008284 1.8e-78 297.0 321 54.5
CARHR109830 Cardamine hirsuta HOM05D006355 ORTHO05D008284 7.5e-77 291.6 323 51.7
Sp3g32760 Schrenkiella parvula HOM05D006355 ORTHO05D008284 7.5e-77 291.6 324 53.4
MBI11_g07532_MAGBIO Magnolia biondii HOM05D006355 ORTHO05D008284 2.9e-76 289.7 340 53.2
VMungo1215G0260 Vigna mungo HOM05D006355 ORTHO05D008284 4.9e-76 288.9 298 58.7
Gohir.A05G032100 Gossypium hirsutum HOM05D006355 ORTHO05D008284 7.8e-74 281.6 323 54.2
BcaB03g16724 Brassica carinata HOM05D006355 ORTHO05D008284 1.3e-73 280.8 323 50.8
Carub.0003s3364 Capsella rubella HOM05D006355 ORTHO05D008284 1.3e-73 280.8 323 52.0
arahy.Tifrunner.gnm1.ann1.2VE13Z Arachis hypogaea HOM05D006355 ORTHO05D008284 1.7e-73 280.4 324 54.0
Sc08g0008680 Simmondsia chinensis HOM05D006355 ORTHO05D008284 1.1e-72 277.7 337 50.4
Dinv36798 Davidia involucrata HOM05D006355 ORTHO05D008284 3.3e-72 276.2 273 56.8
C07p02840 Brassica napus HOM05D006355 ORTHO05D008284 1.2e-71 274.2 323 51.4
BolC7t40681H Brassica oleracea HOM05D006355 ORTHO05D008284 1.2e-71 274.2 323 51.4
CDE06G0893 Ceratophyllum demersum HOM05D006355 ORTHO05D008284 2.8e-71 273.1 323 51.1
BcaC06g36568 Brassica carinata HOM05D006355 ORTHO05D008284 3.6e-71 272.7 323 51.4
BraA07t27933Z Brassica rapa HOM05D006355 ORTHO05D008284 4.7e-71 272.3 327 49.5
A07p01380 Brassica napus HOM05D006355 ORTHO05D008284 6.2e-71 271.9 323 50.5
Aa31LG8G16390 Aethionema arabicum HOM05D006355 ORTHO05D008284 1.4e-70 270.8 322 50.3
AT2G19385 Arabidopsis thaliana HOM05D006355 ORTHO05D008284 1.4e-70 270.8 329 49.5
Os01g0583200 Oryza sativa ssp. japonica HOM05D006355 ORTHO05D008284 3.1e-70 269.6 324 47.5
AUR62025162 Chenopodium quinoa HOM05D006355 ORTHO05D008284 1.5e-69 267.3 327 51.1
ATR0051G027 Amborella trichopoda HOM05D006355 ORTHO05D008284 1.3e-68 264.2 327 48.6
Zm00001eb357030 Zea mays HOM05D006355 ORTHO05D008284 1.1e-67 261.2 323 49.5
AL3G48940 Arabidopsis lyrata HOM05D006355 ORTHO05D008284 2.4e-67 260.0 323 48.6
AUR62029015 Chenopodium quinoa HOM05D006355 ORTHO05D008284 9.2e-67 258.1 332 48.2
Actinidia25231 Actinidia chinensis HOM05D006355 ORTHO05D008284 5.0e-65 252.3 155 78.7
EL10Ac8g19156 Beta vulgaris HOM05D006355 ORTHO05D008284 6.6e-65 251.9 405 42.0
PSO063G0296 Papaver somniferum HOM05D006355 ORTHO05D008284 9.5e-64 248.1 341 44.9
PSO832G0549 Papaver somniferum HOM05D006355 ORTHO05D008284 6.8e-62 241.9 333 46.2
SEGI_15381 Sequoiadendron giganteum HOM05D006355 ORTHO05D008284 9.5e-56 221.5 324 43.2
HPP92_009733 Vanilla planifolia HOM05D006355 ORTHO05D008284 3.8e-52 209.5 335 42.1
SMO200G0211 Selaginella moellendorffii HOM05D006355 ORTHO05D008284 3.0e-41 173.3 326 35.3
Pp3c3_280 Physcomitrium patens HOM05D006355 ORTHO05D008284 8.7e-41 171.8 321 38.6
CBR_g39727 Chara braunii HOM05D006355 ORTHO05D008284 1.4e-38 164.5 181 51.4
AagrBONN_evm.TU.Sc2ySwM_228.3887 Anthoceros agrestis HOM05D006355 ORTHO05D008284 5.3e-38 162.5 143 55.9
Carub.0003s3362 Capsella rubella HOM05D006355 ORTHO05D008284 2.0e-37 160.6 194 45.4
unitig_8.g3528 Utricularia gibba HOM05D001583 ORTHO05D001900 7.6e-37 158.7 321 39.6
CSS0037261 Camellia sinensis var. sinensis HOM05D006355 ORTHO05D008284 8.4e-36 155.2 264 45.1
AL3G48950 Arabidopsis lyrata HOM05D006355 ORTHO05D008284 7.1e-35 152.1 144 56.2
Mapoly0108s0017 Marchantia polymorpha HOM05D006355 ORTHO05D008284 7.9e-34 148.7 261 40.2
SGA_v2.0_scaffold23G10049 Striga asiatica HOM05D006355 ORTHO05D008284 6.9e-30 135.6 355 30.4
AT2G19380 Arabidopsis thaliana HOM05D006355 ORTHO05D011679 1.7e-28 131.0 342 33.6
PRCOL_00003845 Prasinoderma coloniale HOM05D006355 ORTHO05D008284 4.9e-28 129.4 139 47.5
Cre17.g701050 Chlamydomonas reinhardtii HOM05D006355 ORTHO05D008284 3.2e-27 126.7 142 43.7
MCO07G733 Micromonas commoda HOM05D006355 ORTHO05D008284 9.6e-24 115.2 138 43.5
Aqoxy7G02122 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 1.7e-20 104.4 238 36.1
SHI23456 Sapria himalayana HOM05D006355 ORTHO05D008284 6.5e-20 102.4 57 73.7
SHI30666 Sapria himalayana HOM05D006355 ORTHO05D008284 8.4e-20 102.1 57 73.7
Aqoxy4G01928 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 7.1e-19 99.0 238 35.3
Migut.B00896 Erythranthe guttata HOM05D002142 ORTHO05D001189 2.1e-18 97.4 189 41.8
SHI30664 Sapria himalayana HOM05D006355 ORTHO05D008284 2.2e-15 87.4 189 39.2
Actinidia25232 Actinidia chinensis HOM05D006355 ORTHO05D008284 2.5e-11 73.9 112 42.9
Os01g0583300 Oryza sativa ssp. japonica HOM05D006355 ORTHO05D300111 3.7e-07 60.1 42 66.7
GSVIVG01008148001 Vitis vinifera HOM05D006355 ORTHO05D000948 2.4e-06 57.4 127 36.2


User provided reference genes

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