Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p061767 Quercus lobata HOM05D006355 ORTHO05D008284 1.7e-177 625.9 323 100.0
QL02p061794 Quercus lobata HOM05D006355 ORTHO05D008284 8.3e-177 623.6 323 99.7
Haze_25952 Corylus avellana HOM05D006355 ORTHO05D008284 3.5e-135 485.3 322 78.9
Cfa003044 Carpinus fangiana HOM05D006355 ORTHO05D008284 4.8e-132 474.9 322 76.7
CiPaw.03G211000 Carya illinoinensis HOM05D006355 ORTHO05D008284 1.4e-128 463.4 323 74.9
Cpa.g.sc28.115 Carica papaya HOM05D006355 ORTHO05D008284 1.7e-105 386.7 330 64.8
TAR413G0001 Trochodendron aralioides HOM05D006355 ORTHO05D008284 6.5e-105 384.8 328 64.9
Thecc.09G082800 Theobroma cacao HOM05D006355 ORTHO05D008284 6.1e-103 378.3 330 62.7
RcHm_v2.0_Chr2g0094111 Rosa chinensis HOM05D006355 ORTHO05D008284 1.8e-102 376.7 323 64.4
GSVIVG01015151001 Vitis vinifera HOM05D006355 ORTHO05D008284 5.2e-102 375.2 326 64.4
Prupe.7G204300 Prunus persica HOM05D006355 ORTHO05D008284 1.2e-101 374.0 323 65.3
Rhsim05G0014000 Rhododendron simsii HOM05D006355 ORTHO05D008284 3.3e-101 372.5 333 61.6
CANSAT56G3969 Cannabis sativa HOM05D006355 ORTHO05D008284 4.4e-101 372.1 325 63.4
Gohir.D07G013200 Gossypium hirsutum HOM05D006355 ORTHO05D008284 1.7e-100 370.2 323 61.0
Hma1.2p1_0672F.1_g200900 Hydrangea macrophylla HOM05D006355 ORTHO05D008284 1.7e-100 370.2 329 62.0
CANSAT56G1278 Cannabis sativa HOM05D006355 ORTHO05D008284 2.2e-100 369.8 325 63.1
Gorai.001G013900 Gossypium raimondii HOM05D006355 ORTHO05D008284 6.3e-100 368.2 323 60.7
Atru.chr7.1648 Acer truncatum HOM05D006355 ORTHO05D008284 1.4e-99 367.1 330 62.7
Eucgr.C00847 Eucalyptus grandis HOM05D006355 ORTHO05D008284 2.4e-99 366.3 324 61.4
Lj4A288G20 Lonicera japonica HOM05D006355 ORTHO05D008284 2.4e-99 366.3 333 62.5
MELO3C004639.2 Cucumis melo HOM05D006355 ORTHO05D008284 7.0e-99 364.8 322 64.3
Gohir.A07G013400 Gossypium hirsutum HOM05D006355 ORTHO05D008284 7.0e-99 364.8 323 60.4
CsaV3_2G001300 Cucumis sativus L. HOM05D006355 ORTHO05D008284 3.5e-98 362.5 322 63.7
Manes.16G098900 Manihot esculenta HOM05D006355 ORTHO05D008284 5.9e-98 361.7 326 61.3
ClCG11G001610 Citrullus lanatus HOM05D006355 ORTHO05D008284 1.3e-97 360.5 325 63.4
Glyma.17G052200 Glycine max HOM05D006355 ORTHO05D008284 2.7e-95 352.8 324 60.5
Potri.006G146200 Populus trichocarpa HOM05D006355 ORTHO05D008284 4.7e-95 352.1 329 59.3
FAN28G1606 Fragaria x ananassa HOM05D006355 ORTHO05D008284 6.1e-95 351.7 323 61.6
Sed0027351 Sechium edule HOM05D006355 ORTHO05D008284 6.1e-95 351.7 322 62.4
Ciclev10008972m.g Citrus clementina HOM05D006355 ORTHO05D008284 3.0e-94 349.4 322 61.2
Glyma.13G107200 Glycine max HOM05D006355 ORTHO05D008284 6.8e-94 348.2 323 59.8
FvH4_1g08060 Fragaria vesca HOM05D006355 ORTHO05D008284 1.2e-93 347.4 323 61.3
FAN19G0491 Fragaria x ananassa HOM05D006355 ORTHO05D008284 1.2e-93 347.4 323 61.3
Lj4g0004716 Lotus japonicus HOM05D006355 ORTHO05D008284 1.5e-93 347.1 323 60.1
FAN23G1962 Fragaria x ananassa HOM05D006355 ORTHO05D008284 2.0e-93 346.7 323 61.6
FAN26G2768 Fragaria x ananassa HOM05D006355 ORTHO05D008284 7.5e-93 344.7 335 60.0
FAN26G1509 Fragaria x ananassa HOM05D006355 ORTHO05D008284 1.3e-92 344.0 335 60.0
TWI34G0237 Tripterygium wilfordii HOM05D006355 ORTHO05D008284 1.7e-92 343.6 333 58.0
Phvul.003G133900 Phaseolus vulgaris HOM05D006355 ORTHO05D008284 3.1e-91 339.3 324 60.8
Oeu010827.1 Olea europaea HOM05D006355 ORTHO05D008284 9.1e-91 337.8 321 58.6
Peaxi162Scf00494g00027 Petunia axillaris HOM05D006355 ORTHO05D008284 9.1e-91 337.8 328 55.5
Nitab4.5_0002079g0060 Nicotiana tabacum HOM05D006355 ORTHO05D008284 1.6e-90 337.0 327 56.6
arahy.Tifrunner.gnm1.ann1.I94R61 Arachis hypogaea HOM05D006355 ORTHO05D008284 2.7e-90 336.3 324 59.0
CAN.G35.5 Capsicum annuum HOM05D006355 ORTHO05D008284 5.9e-90 335.1 327 56.0
Aqoxy7G01135 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 1.7e-89 333.6 322 58.1
Nn8g38760 Nelumbo nucifera HOM05D006355 ORTHO05D008284 1.7e-89 333.6 326 57.1
Nn8g41302 Nelumbo nucifera HOM05D006355 ORTHO05D008284 1.7e-89 333.6 326 57.1
vmacro17166 Vaccinium macrocarpon HOM05D006355 ORTHO05D008284 3.8e-89 332.4 322 57.1
Solyc07g041020.3 Solanum lycopersicum HOM05D006355 ORTHO05D008284 1.1e-88 330.9 327 56.0
Ca_21303_v3 Cicer arietinum L. HOM05D006355 ORTHO05D008284 3.2e-88 329.3 323 57.3
Migut.L01533 Erythranthe guttata HOM05D006355 ORTHO05D008284 9.5e-88 327.8 326 56.1
PGSC0003DMG400014101 Solanum tuberosum HOM05D006355 ORTHO05D008284 2.8e-87 326.2 327 56.0
ECA234G3558 Erigeron canadensis HOM05D006355 ORTHO05D008284 4.7e-87 325.5 322 56.2
Sabra06G0115400 Salix brachista HOM05D006355 ORTHO05D008284 1.8e-86 323.6 368 52.4
Cc06_g11800 Coffea canephora HOM05D006355 ORTHO05D008284 2.3e-86 323.2 331 55.0
Psat4g016280 Pisum sativum HOM05D006355 ORTHO05D008284 2.3e-86 323.2 325 57.8
MD02G1085300 Malus domestica HOM05D006355 ORTHO05D008284 4.0e-86 322.4 324 57.4
TPR.G9437 Trifolium pratense HOM05D006355 ORTHO05D008284 6.8e-86 321.6 323 57.6
Sopen07g020150 Solanum pennellii HOM05D006355 ORTHO05D008284 1.2e-85 320.9 330 54.8
Duzib168G2189 Durio zibethinus HOM05D006355 ORTHO05D008284 1.5e-85 320.5 323 57.0
DCAR_024718 Daucus carota HOM05D006355 ORTHO05D008284 2.6e-85 319.7 328 56.1
HanXRQChr12g0354551 Helianthus annuus HOM05D006355 ORTHO05D008284 3.4e-85 319.3 322 55.0
Medtr4g125720 Medicago truncatula HOM05D006355 ORTHO05D008284 4.4e-85 318.9 323 56.7
MD15G1212400 Malus domestica HOM05D006355 ORTHO05D008284 2.8e-84 316.2 326 57.4
Nitab4.5_0002842g0040 Nicotiana tabacum HOM05D006355 ORTHO05D008284 3.7e-84 315.8 336 54.2
Hund08706 Selenicereus undatus HOM05D006355 ORTHO05D008284 1.4e-83 313.9 336 57.1
COL.COLO4_18155 Corchorus olitorius HOM05D006355 ORTHO05D008284 2.7e-82 309.7 330 54.5
PGR142G1993 Punica granatum HOM05D006355 ORTHO05D008284 2.7e-82 309.7 325 56.3
Lsat_1_v5_gn_5_143521 Lactuca sativa HOM05D006355 ORTHO05D008284 3.5e-82 309.3 317 54.6
SalBow1G0189 Salvia bowleyana HOM05D006355 ORTHO05D008284 6.6e-81 305.1 325 53.5
SGA_v2.0_scaffold21G09447 Striga asiatica HOM05D006355 ORTHO05D008284 1.6e-79 300.4 322 53.4
Thhalv10022802m.g Eutrema salsugineum HOM05D006355 ORTHO05D008284 4.0e-78 295.8 323 52.6
Lalb_Chr12g0199961 Lupinus albus HOM05D006355 ORTHO05D008284 6.8e-78 295.0 321 54.2
CARHR109830 Cardamine hirsuta HOM05D006355 ORTHO05D008284 2.9e-76 289.7 323 51.4
Sp3g32760 Schrenkiella parvula HOM05D006355 ORTHO05D008284 2.9e-76 289.7 324 53.1
MBI11_g07532_MAGBIO Magnolia biondii HOM05D006355 ORTHO05D008284 1.1e-75 287.7 340 52.9
VMungo1215G0260 Vigna mungo HOM05D006355 ORTHO05D008284 1.8e-75 287.0 298 58.4
Gohir.A05G032100 Gossypium hirsutum HOM05D006355 ORTHO05D008284 3.0e-73 279.6 323 53.9
BcaB03g16724 Brassica carinata HOM05D006355 ORTHO05D008284 5.0e-73 278.9 323 50.5
Carub.0003s3364 Capsella rubella HOM05D006355 ORTHO05D008284 5.0e-73 278.9 323 51.7
arahy.Tifrunner.gnm1.ann1.2VE13Z Arachis hypogaea HOM05D006355 ORTHO05D008284 6.6e-73 278.5 324 53.7
Dinv36798 Davidia involucrata HOM05D006355 ORTHO05D008284 3.3e-72 276.2 273 56.8
Sc08g0008680 Simmondsia chinensis HOM05D006355 ORTHO05D008284 3.3e-72 276.2 337 50.1
C07p02840 Brassica napus HOM05D006355 ORTHO05D008284 4.7e-71 272.3 323 51.1
BolC7t40681H Brassica oleracea HOM05D006355 ORTHO05D008284 4.7e-71 272.3 323 51.1
CDE06G0893 Ceratophyllum demersum HOM05D006355 ORTHO05D008284 1.1e-70 271.2 323 50.8
BcaC06g36568 Brassica carinata HOM05D006355 ORTHO05D008284 1.4e-70 270.8 323 51.1
BraA07t27933Z Brassica rapa HOM05D006355 ORTHO05D008284 1.8e-70 270.4 327 49.2
A07p01380 Brassica napus HOM05D006355 ORTHO05D008284 2.3e-70 270.0 323 50.2
Aa31LG8G16390 Aethionema arabicum HOM05D006355 ORTHO05D008284 5.2e-70 268.9 322 50.0
AT2G19385 Arabidopsis thaliana HOM05D006355 ORTHO05D008284 5.2e-70 268.9 329 49.2
Os01g0583200 Oryza sativa ssp. japonica HOM05D006355 ORTHO05D008284 1.2e-69 267.7 324 47.2
AUR62025162 Chenopodium quinoa HOM05D006355 ORTHO05D008284 5.8e-69 265.4 327 50.8
ATR0051G027 Amborella trichopoda HOM05D006355 ORTHO05D008284 4.9e-68 262.3 327 48.3
Zm00001eb357030 Zea mays HOM05D006355 ORTHO05D008284 5.4e-67 258.8 323 49.2
AL3G48940 Arabidopsis lyrata HOM05D006355 ORTHO05D008284 9.2e-67 258.1 323 48.3
AUR62029015 Chenopodium quinoa HOM05D006355 ORTHO05D008284 3.5e-66 256.1 332 47.9
Actinidia25231 Actinidia chinensis HOM05D006355 ORTHO05D008284 5.0e-65 252.3 155 78.7
EL10Ac8g19156 Beta vulgaris HOM05D006355 ORTHO05D008284 3.3e-64 249.6 405 41.7
PSO063G0296 Papaver somniferum HOM05D006355 ORTHO05D008284 1.2e-63 247.7 341 44.9
PSO832G0549 Papaver somniferum HOM05D006355 ORTHO05D008284 8.9e-62 241.5 333 46.2
SEGI_15381 Sequoiadendron giganteum HOM05D006355 ORTHO05D008284 9.5e-56 221.5 324 43.2
HPP92_009733 Vanilla planifolia HOM05D006355 ORTHO05D008284 1.4e-51 207.6 335 41.8
SMO200G0211 Selaginella moellendorffii HOM05D006355 ORTHO05D008284 3.0e-41 173.3 326 35.3
Pp3c3_280 Physcomitrium patens HOM05D006355 ORTHO05D008284 8.7e-41 171.8 321 38.6
CBR_g39727 Chara braunii HOM05D006355 ORTHO05D008284 1.4e-38 164.5 181 51.4
AagrBONN_evm.TU.Sc2ySwM_228.3887 Anthoceros agrestis HOM05D006355 ORTHO05D008284 5.3e-38 162.5 143 55.9
Carub.0003s3362 Capsella rubella HOM05D006355 ORTHO05D008284 2.0e-37 160.6 194 45.4
unitig_8.g3528 Utricularia gibba HOM05D001583 ORTHO05D001900 1.3e-36 157.9 321 39.9
CSS0037261 Camellia sinensis var. sinensis HOM05D006355 ORTHO05D008284 3.2e-35 153.3 264 44.7
AL3G48950 Arabidopsis lyrata HOM05D006355 ORTHO05D008284 7.1e-35 152.1 144 56.2
Mapoly0108s0017 Marchantia polymorpha HOM05D006355 ORTHO05D008284 7.9e-34 148.7 261 40.2
SGA_v2.0_scaffold23G10049 Striga asiatica HOM05D006355 ORTHO05D008284 2.6e-29 133.7 355 30.1
AT2G19380 Arabidopsis thaliana HOM05D006355 ORTHO05D011679 1.7e-28 131.0 342 33.6
PRCOL_00003845 Prasinoderma coloniale HOM05D006355 ORTHO05D008284 4.9e-28 129.4 139 47.5
Cre17.g701050 Chlamydomonas reinhardtii HOM05D006355 ORTHO05D008284 3.2e-27 126.7 142 43.7
MCO07G733 Micromonas commoda HOM05D006355 ORTHO05D008284 9.6e-24 115.2 138 43.5
Aqoxy7G02122 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 6.5e-20 102.4 238 35.7
SHI23456 Sapria himalayana HOM05D006355 ORTHO05D008284 6.5e-20 102.4 57 73.7
SHI30666 Sapria himalayana HOM05D006355 ORTHO05D008284 8.4e-20 102.1 57 73.7
Migut.B00896 Erythranthe guttata HOM05D002142 ORTHO05D001189 2.1e-18 97.4 189 41.8
Aqoxy4G01928 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 2.7e-18 97.1 238 34.9
SHI30664 Sapria himalayana HOM05D006355 ORTHO05D008284 2.2e-15 87.4 189 39.2
Actinidia25232 Actinidia chinensis HOM05D006355 ORTHO05D008284 9.4e-11 72.0 112 42.0
Os01g0583300 Oryza sativa ssp. japonica HOM05D006355 ORTHO05D300111 3.7e-07 60.1 42 66.7
GSVIVG01008148001 Vitis vinifera HOM05D006355 ORTHO05D000948 2.4e-06 57.4 127 36.2


User provided reference genes

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