Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p056630 Quercus lobata HOM05D001195 ORTHO05D019475 1.7e-38 162.2 82 100.0
QL05p050035 Quercus lobata HOM05D001195 ORTHO05D001138 1.0e-22 109.8 66 84.8
Haze_05390 Corylus avellana HOM05D001195 ORTHO05D001138 4.2e-16 87.8 58 74.1
Cfa001104 Carpinus fangiana HOM05D001195 ORTHO05D001138 2.7e-15 85.1 58 74.1
CiPaw.09G136800 Carya illinoinensis HOM05D001195 ORTHO05D001138 2.3e-14 82.0 64 65.6
Nn6g34481 Nelumbo nucifera HOM05D001195 ORTHO05D001138 5.1e-14 80.9 64 65.6
Atru.chr10.1552 Acer truncatum HOM05D001195 ORTHO05D001138 2.5e-13 78.6 64 62.5
Actinidia35607 Actinidia chinensis HOM05D001195 ORTHO05D001138 2.5e-13 78.6 64 60.9
Manes.16G042500 Manihot esculenta HOM05D001195 ORTHO05D001138 2.5e-13 78.6 64 62.5
arahy.Tifrunner.gnm1.ann1.PY7Z8Y Arachis hypogaea HOM05D001195 ORTHO05D019475 7.4e-13 77.0 63 60.3
Dinv32331 Davidia involucrata HOM05D001195 ORTHO05D001138 7.4e-13 77.0 64 59.4
Dinv12743 Davidia involucrata HOM05D001195 ORTHO05D001138 1.3e-12 76.3 64 59.4
Nn3g21089 Nelumbo nucifera HOM05D001195 ORTHO05D001138 1.3e-12 76.3 64 59.4
Medtr2g017980 Medicago truncatula HOM05D001195 ORTHO05D001138 1.6e-12 75.9 64 62.5
Prupe.4G067700 Prunus persica HOM05D001195 ORTHO05D001138 2.1e-12 75.5 60 60.0
PGR031G3259 Punica granatum HOM05D001195 ORTHO05D001138 2.1e-12 75.5 63 60.3
TPR.G4468 Trifolium pratense HOM05D001195 ORTHO05D001138 2.1e-12 75.5 64 62.5
Actinidia39524 Actinidia chinensis HOM05D001195 ORTHO05D001138 2.8e-12 75.1 64 57.8
Lj6g0025795 Lotus japonicus HOM05D001195 ORTHO05D001138 2.8e-12 75.1 64 59.4
GSVIVG01021264001 Vitis vinifera HOM05D001195 ORTHO05D001138 3.7e-12 74.7 71 56.3
arahy.Tifrunner.gnm1.ann1.GAN3W4 Arachis hypogaea HOM05D001195 ORTHO05D001138 6.2e-12 73.9 63 58.7
Glyma.13G226500 Glycine max HOM05D001195 ORTHO05D001138 6.2e-12 73.9 63 61.9
Glyma.15G085900 Glycine max HOM05D001195 ORTHO05D001138 6.2e-12 73.9 63 61.9
Potri.004G061700 Populus trichocarpa HOM05D001195 ORTHO05D001138 6.2e-12 73.9 64 59.4
Eucgr.D00435 Eucalyptus grandis HOM05D001195 ORTHO05D001138 8.2e-12 73.6 63 55.6
TAR624G1016 Trochodendron aralioides HOM05D001195 ORTHO05D001138 8.2e-12 73.6 64 60.9
Actinidia07653 Actinidia chinensis HOM05D001195 ORTHO05D019475 1.1e-11 73.2 64 56.2
Potri.011G071300 Populus trichocarpa HOM05D001195 ORTHO05D001138 1.1e-11 73.2 65 56.9
AUR62039487 Chenopodium quinoa HOM05D001195 ORTHO05D001138 1.4e-11 72.8 64 57.8
AUR62041813 Chenopodium quinoa HOM05D001195 ORTHO05D001138 1.4e-11 72.8 64 57.8
RcHm_v2.0_Chr5g0011921 Rosa chinensis HOM05D001195 ORTHO05D001138 1.8e-11 72.4 64 56.2
Gohir.D06G206500 Gossypium hirsutum HOM05D001195 ORTHO05D001138 2.4e-11 72.0 64 54.7
Gorai.010G240900 Gossypium raimondii HOM05D001195 ORTHO05D001138 2.4e-11 72.0 64 54.7
MD10G1274700 Malus domestica HOM05D001195 ORTHO05D001138 3.1e-11 71.6 60 58.3
vmacro04000 Vaccinium macrocarpon HOM05D001195 ORTHO05D001138 3.1e-11 71.6 64 56.2
AT4G18820 Arabidopsis thaliana HOM05D001195 ORTHO05D001138 5.3e-11 70.9 60 58.3
Phvul.006G172900 Phaseolus vulgaris HOM05D001195 ORTHO05D001138 5.3e-11 70.9 62 59.7
Sed0022889 Sechium edule HOM05D001195 ORTHO05D001138 5.3e-11 70.9 68 57.4
Thecc.06G164600 Theobroma cacao HOM05D001195 ORTHO05D001138 5.3e-11 70.9 55 65.5
TAR626G1395 Trochodendron aralioides HOM05D001195 ORTHO05D001138 5.3e-11 70.9 64 60.9
Ciclev10014075m.g Citrus clementina HOM05D001195 ORTHO05D001138 6.9e-11 70.5 64 56.2
ATR0012G006 Amborella trichopoda HOM05D001195 ORTHO05D001138 9.0e-11 70.1 78 51.3
Ca_00474_v3 Cicer arietinum L. HOM05D001195 ORTHO05D001138 9.0e-11 70.1 64 59.4
FvH4_3g07230 Fragaria vesca HOM05D001195 ORTHO05D001138 9.0e-11 70.1 64 57.8
FAN11G0143 Fragaria x ananassa HOM05D001195 ORTHO05D001138 9.0e-11 70.1 64 57.8
CiPaw.10G103700 Carya illinoinensis HOM05D001195 ORTHO05D001138 1.2e-10 69.7 51 68.6
Gohir.A06G199200 Gossypium hirsutum HOM05D001195 ORTHO05D001138 1.2e-10 69.7 64 53.1
MD00G1008200 Malus domestica HOM05D001195 ORTHO05D001138 1.2e-10 69.7 60 56.7
VMungo0540G0601 Vigna mungo HOM05D001195 ORTHO05D001138 1.2e-10 69.7 62 58.1
CSS0006950 Camellia sinensis var. sinensis HOM05D001195 ORTHO05D001138 1.5e-10 69.3 64 56.2
CSS0029612 Camellia sinensis var. sinensis HOM05D001195 ORTHO05D001138 1.5e-10 69.3 64 56.2
CARHR225680 Cardamine hirsuta HOM05D001195 ORTHO05D001138 1.5e-10 69.3 60 56.7
Duzib160G0611 Durio zibethinus HOM05D001195 ORTHO05D001138 1.5e-10 69.3 65 53.8
Manes.17G059900 Manihot esculenta HOM05D001195 ORTHO05D001138 1.5e-10 69.3 64 54.7
Psat1g194560 Pisum sativum HOM05D001195 ORTHO05D001138 1.5e-10 69.3 65 56.9
arahy.Tifrunner.gnm1.ann1.T4R6KE Arachis hypogaea HOM05D001195 ORTHO05D019475 2.0e-10 68.9 59 57.6
MSTRG.13236 Avicennia marina HOM05D001195 ORTHO05D001138 2.0e-10 68.9 58 60.3
CANSAT35G1100 Cannabis sativa HOM05D001195 ORTHO05D001138 2.0e-10 68.9 68 51.5
Duzib192G1074 Durio zibethinus HOM05D001195 ORTHO05D001138 2.0e-10 68.9 67 55.2
Sabra11G0055900 Salix brachista HOM05D001195 ORTHO05D001138 2.0e-10 68.9 58 58.6
Sabra11G0059000 Salix brachista HOM05D001195 ORTHO05D001138 2.0e-10 68.9 58 58.6
ClCG01G023950 Citrullus lanatus HOM05D001195 ORTHO05D001138 2.6e-10 68.6 56 64.3
FAN16G0685 Fragaria x ananassa HOM05D001195 ORTHO05D001138 2.6e-10 68.6 63 57.1
SGA_v2.0_scaffold106G30604 Striga asiatica HOM05D001195 ORTHO05D001138 2.6e-10 68.6 57 61.4
AL7G35420 Arabidopsis lyrata HOM05D001195 ORTHO05D001138 3.4e-10 68.2 60 56.7
Duzib235G0195 Durio zibethinus HOM05D001195 ORTHO05D001138 3.4e-10 68.2 64 57.8
FAN21G1686 Fragaria x ananassa HOM05D001195 ORTHO05D001138 3.4e-10 68.2 64 56.2
MELO3C007194.2 Cucumis melo HOM05D001195 ORTHO05D001138 4.5e-10 67.8 56 62.5
Gohir.D10G034800 Gossypium hirsutum HOM05D001195 ORTHO05D001138 4.5e-10 67.8 53 64.2
Gorai.011G036600 Gossypium raimondii HOM05D001195 ORTHO05D001138 4.5e-10 67.8 53 64.2
Sp7g17530 Schrenkiella parvula HOM05D001195 ORTHO05D001138 4.5e-10 67.8 60 56.7
Gohir.A10G034100 Gossypium hirsutum HOM05D001195 ORTHO05D001138 5.8e-10 67.4 53 64.2
Rhsim13G0187200 Rhododendron simsii HOM05D001195 ORTHO05D001138 5.8e-10 67.4 62 56.5
Thhalv10024266m.g Eutrema salsugineum HOM05D001195 ORTHO05D001138 7.6e-10 67.0 54 61.1
SalBow7G4630 Salvia bowleyana HOM05D001195 ORTHO05D001138 7.6e-10 67.0 58 55.2
SalBow7G4755 Salvia bowleyana HOM05D001195 ORTHO05D001138 7.6e-10 67.0 58 55.2
BcaC09g51447 Brassica carinata HOM05D001195 ORTHO05D001138 1.0e-09 66.6 55 60.0
BcaNung04862 Brassica carinata HOM05D001195 ORTHO05D001138 1.0e-09 66.6 55 60.0
A01p10850 Brassica napus HOM05D001195 ORTHO05D001138 1.0e-09 66.6 55 60.0
C01p12860 Brassica napus HOM05D001195 ORTHO05D001138 1.0e-09 66.6 55 60.0
BolC1t01262H Brassica oleracea HOM05D001195 ORTHO05D001138 1.0e-09 66.6 55 60.0
BraA01t01032Z Brassica rapa HOM05D001195 ORTHO05D001138 1.0e-09 66.6 55 60.0
FAN25G2492 Fragaria x ananassa HOM05D001195 ORTHO05D001138 1.3e-09 66.2 64 56.2
Gohir.A09G074900 Gossypium hirsutum HOM05D001195 ORTHO05D001138 1.3e-09 66.2 53 64.2
Hund21450 Selenicereus undatus HOM05D001195 ORTHO05D001138 1.3e-09 66.2 60 58.3
Aa31LG6G1530 Aethionema arabicum HOM05D001195 ORTHO05D001138 1.7e-09 65.9 62 51.6
EL10Ac8g19988 Beta vulgaris HOM05D001195 ORTHO05D001138 1.7e-09 65.9 64 53.1
Cpa.g.sc7.115 Carica papaya HOM05D001195 ORTHO05D001138 1.7e-09 65.9 58 58.6
Gohir.D09G074700 Gossypium hirsutum HOM05D001195 ORTHO05D001138 1.7e-09 65.9 53 62.3
Gorai.006G089800 Gossypium raimondii HOM05D001195 ORTHO05D001138 1.7e-09 65.9 53 62.3
Lj2A317G40 Lonicera japonica HOM05D001195 ORTHO05D001138 1.7e-09 65.9 63 55.6
Sed0001864 Sechium edule HOM05D001195 ORTHO05D001138 1.7e-09 65.9 68 54.4
Carub.0007s2241 Capsella rubella HOM05D001195 ORTHO05D001138 2.2e-09 65.5 54 61.1
COL.COLO4_31221 Corchorus olitorius HOM05D001195 ORTHO05D001138 2.2e-09 65.5 58 60.3
MBI07_g00451_MAGBIO Magnolia biondii HOM05D001195 ORTHO05D001138 2.2e-09 65.5 67 50.7
Nitab4.5_0006070g0030 Nicotiana tabacum HOM05D001195 ORTHO05D001138 2.2e-09 65.5 56 60.7
PGSC0003DMG400028463 Solanum tuberosum HOM05D001195 ORTHO05D001138 2.2e-09 65.5 54 61.1
Aqoxy4G00234 Aquilegia oxysepala HOM05D001195 ORTHO05D001138 2.9e-09 65.1 64 54.7
Oeu040926.1 Olea europaea HOM05D001195 ORTHO05D001138 2.9e-09 65.1 74 52.7
Sc05g0006830 Simmondsia chinensis HOM05D001195 ORTHO05D001138 2.9e-09 65.1 63 54.0
Solyc02g072090.2 Solanum lycopersicum HOM05D001195 ORTHO05D001138 2.9e-09 65.1 54 61.1
Sopen02g021050 Solanum pennellii HOM05D001195 ORTHO05D001138 2.9e-09 65.1 54 61.1
CAN.G411.42 Capsicum annuum HOM05D001195 ORTHO05D001138 6.5e-09 63.9 54 61.1
CsaV3_6G051090 Cucumis sativus L. HOM05D001195 ORTHO05D001138 8.4e-09 63.5 70 55.7
Lalb_Chr15g0086351 Lupinus albus HOM05D001195 ORTHO05D001138 8.4e-09 63.5 64 57.8
Nitab4.5_0000437g0030 Nicotiana tabacum HOM05D001195 ORTHO05D001138 8.4e-09 63.5 56 58.9
TWI53G0488 Tripterygium wilfordii HOM05D001195 ORTHO05D001138 8.4e-09 63.5 66 48.5
ECA234G3008 Erigeron canadensis HOM05D001195 ORTHO05D001138 1.1e-08 63.2 55 60.0
Zm00001eb293320 Zea mays HOM05D001195 ORTHO05D001138 1.1e-08 63.2 59 59.3
CSS0020747 Camellia sinensis var. sinensis HOM05D001195 ORTHO05D001138 1.4e-08 62.8 67 53.7
Migut.H01406 Erythranthe guttata HOM05D001195 ORTHO05D001138 1.4e-08 62.8 57 56.1
CSS0009860 Camellia sinensis var. sinensis HOM05D001195 ORTHO05D001138 1.9e-08 62.4 58 58.6
Lsat_1_v5_gn_4_48381 Lactuca sativa HOM05D001195 ORTHO05D001138 1.9e-08 62.4 49 63.3
Lj1A1176T61 Lonicera japonica HOM05D001195 ORTHO05D001138 1.9e-08 62.4 64 48.4
Lalb_Chr18g0054791 Lupinus albus HOM05D001195 ORTHO05D001138 1.9e-08 62.4 54 61.1
Cc02_g15690 Coffea canephora HOM05D001195 ORTHO05D001138 4.2e-08 61.2 58 55.2
THA.LOC104798436 Tarenaya hassleriana HOM05D001195 ORTHO05D001138 4.2e-08 61.2 49 65.3
TWI09G0472 Tripterygium wilfordii HOM05D001195 ORTHO05D001138 4.2e-08 61.2 62 50.0
Os05g0529600 Oryza sativa ssp. japonica HOM05D001195 ORTHO05D001138 5.5e-08 60.8 58 56.9
MBI06_g18694_MAGBIO Magnolia biondii HOM05D000215 ORTHO05D002239 9.3e-08 60.1 64 48.4
Carub.0008s0227 Capsella rubella HOM05D001195 ORTHO05D001138 1.2e-07 59.7 48 62.5
SalBow8G2953 Salvia bowleyana HOM05D001195 ORTHO05D001138 1.6e-07 59.3 52 55.8
AT5G45720 Arabidopsis thaliana HOM05D001195 ORTHO05D001138 2.1e-07 58.9 50 60.0
Peaxi162Scf00112g00048 Petunia axillaris HOM05D001195 ORTHO05D001138 2.1e-07 58.9 50 62.0
Thhalv10000763m.g Eutrema salsugineum HOM05D001195 ORTHO05D001138 4.6e-07 57.8 49 59.2
Aa31LG9G7340 Aethionema arabicum HOM05D001195 ORTHO05D001138 7.9e-07 57.0 51 52.9
BraA09t37792Z Brassica rapa HOM05D001195 ORTHO05D001138 7.9e-07 57.0 48 58.3
CARHR176250 Cardamine hirsuta HOM05D001195 ORTHO05D001138 7.9e-07 57.0 66 45.5
Zm00001eb361980 Zea mays HOM05D001195 ORTHO05D001138 7.9e-07 57.0 55 58.2
BcaC04g21747 Brassica carinata HOM05D001195 ORTHO05D001138 1.3e-06 56.2 48 58.3
A09p21890 Brassica napus HOM05D001195 ORTHO05D001138 1.3e-06 56.2 48 58.3
C09p28060 Brassica napus HOM05D001195 ORTHO05D001138 1.3e-06 56.2 48 58.3
BolC9t55673H Brassica oleracea HOM05D001195 ORTHO05D001138 1.3e-06 56.2 48 58.3
BcaC06g34409 Brassica carinata HOM05D001195 ORTHO05D001138 1.8e-06 55.8 48 58.3
A06p46420 Brassica napus HOM05D001195 ORTHO05D001138 1.8e-06 55.8 48 58.3
C07p29000 Brassica napus HOM05D001195 ORTHO05D001138 1.8e-06 55.8 48 58.3
BolC7t43439H Brassica oleracea HOM05D001195 ORTHO05D001138 1.8e-06 55.8 48 58.3
BraA06t27506Z Brassica rapa HOM05D001195 ORTHO05D001138 1.8e-06 55.8 48 58.3
DCAR_027972 Daucus carota HOM05D001195 ORTHO05D001138 1.8e-06 55.8 64 45.3
HPP92_022985 Vanilla planifolia HOM05D001195 ORTHO05D001138 1.8e-06 55.8 57 52.6
HanXRQChr17g0556931 Helianthus annuus HOM05D001195 ORTHO05D001138 2.3e-06 55.5 51 56.9
AL8G12920 Arabidopsis lyrata HOM05D001195 ORTHO05D001138 5.1e-06 54.3 47 57.4
Zm00001eb154140 Zea mays HOM05D001195 ORTHO05D001138 5.1e-06 54.3 54 57.4
PSO170G2433 Papaver somniferum HOM05D001195 ORTHO05D001138 6.7e-06 53.9 54 50.0
DCAR_005162 Daucus carota HOM05D001195 ORTHO05D001138 8.7e-06 53.5 66 40.9


User provided reference genes

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