Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p040023 Quercus lobata HOM05D006226 ORTHO05D007738 0.0e+00 1407.5 705 100.0
Cfa003249 Carpinus fangiana HOM05D006226 ORTHO05D007738 0.0e+00 1088.2 713 76.6
CiPaw.03G218400 Carya illinoinensis HOM05D006226 ORTHO05D007738 2.8e-302 1041.6 713 75.5
Ciclev10007624m.g Citrus clementina HOM05D006226 ORTHO05D007738 4.0e-264 914.8 718 65.9
GSVIVG01015381001 Vitis vinifera HOM05D006226 ORTHO05D007738 4.8e-254 881.3 704 64.2
Prupe.7G232400 Prunus persica HOM05D006226 ORTHO05D007738 1.1e-245 853.6 708 62.3
ClCG06G008620 Citrullus lanatus HOM05D006226 ORTHO05D007738 1.0e-243 847.0 649 65.2
CANSAT56G2062 Cannabis sativa HOM05D006226 ORTHO05D007738 3.8e-243 845.1 648 65.0
Manes.16G114900 Manihot esculenta HOM05D006226 ORTHO05D007738 1.1e-242 843.6 721 61.7
MD15G1183800 Malus domestica HOM05D006226 ORTHO05D007738 1.0e-240 837.0 708 60.9
RcHm_v2.0_Chr2g0090271 Rosa chinensis HOM05D006226 ORTHO05D007738 4.0e-240 835.1 701 61.3
TAR383G0867 Trochodendron aralioides HOM05D006226 ORTHO05D007738 4.0e-240 835.1 710 63.4
Dinv36642 Davidia involucrata HOM05D006226 ORTHO05D007738 8.3e-238 827.4 618 67.3
FAN26G0472 Fragaria x ananassa HOM05D006226 ORTHO05D007738 1.4e-237 826.6 702 60.7
MELO3C024624.2 Cucumis melo HOM05D006226 ORTHO05D007738 2.4e-237 825.9 713 60.4
FvH4_1g04570 Fragaria vesca HOM05D006226 ORTHO05D007738 3.2e-237 825.5 702 60.4
FAN19G1825 Fragaria x ananassa HOM05D006226 ORTHO05D007738 2.7e-236 822.4 702 60.3
FAN23G2910 Fragaria x ananassa HOM05D006226 ORTHO05D007738 2.7e-236 822.4 702 60.5
Rhsim01G0096900 Rhododendron simsii HOM05D006226 ORTHO05D007738 5.9e-236 821.2 717 61.4
Glyma.07G085400 Glycine max HOM05D006226 ORTHO05D007738 2.3e-235 819.3 713 61.0
arahy.Tifrunner.gnm1.ann1.ZKYF3I Arachis hypogaea HOM05D006226 ORTHO05D007738 2.5e-234 815.8 717 59.8
Phvul.004G164600 Phaseolus vulgaris HOM05D006226 ORTHO05D007738 9.5e-234 813.9 648 64.0
Medtr6g087530 Medicago truncatula HOM05D006226 ORTHO05D007738 1.2e-233 813.5 719 58.8
Psat1g043440 Pisum sativum HOM05D006226 ORTHO05D007738 1.2e-233 813.5 709 59.2
Sabra18G0068600 Salix brachista HOM05D006226 ORTHO05D007738 1.2e-233 813.5 715 61.0
arahy.Tifrunner.gnm1.ann1.9IQ1SY Arachis hypogaea HOM05D006226 ORTHO05D007738 1.6e-233 813.1 719 59.9
COL.COLO4_34848 Corchorus olitorius HOM05D006226 ORTHO05D007738 1.6e-233 813.1 650 63.5
Gorai.009G025300 Gossypium raimondii HOM05D006226 ORTHO05D007738 8.9e-232 807.4 715 59.6
Lj2g0027193 Lotus japonicus HOM05D006226 ORTHO05D007738 1.2e-231 807.0 714 59.4
Glyma.09G191500 Glycine max HOM05D006226 ORTHO05D007738 2.0e-231 806.2 718 60.3
Potri.018G081500 Populus trichocarpa HOM05D006226 ORTHO05D007738 3.7e-230 802.0 718 59.3
TPR.G10046 Trifolium pratense HOM05D006226 ORTHO05D007738 6.0e-228 794.7 649 61.3
Sed0016798 Sechium edule HOM05D006226 ORTHO05D007738 6.6e-227 791.2 650 62.0
VMungo0464G1421 Vigna mungo HOM05D006226 ORTHO05D007738 3.3e-226 788.9 711 58.6
Lj7C652G7 Lonicera japonica HOM05D006226 ORTHO05D007738 1.3e-222 776.9 653 61.4
vmacro20706 Vaccinium macrocarpon HOM05D006226 ORTHO05D007738 6.4e-222 774.6 801 53.8
Gohir.A05G023700 Gossypium hirsutum HOM05D006226 ORTHO05D007738 1.6e-220 770.0 715 56.6
Eucgr.C01033 Eucalyptus grandis HOM05D006226 ORTHO05D007738 1.9e-218 763.1 636 59.3
Aqoxy7G03848 Aquilegia oxysepala HOM05D006226 ORTHO05D007738 2.6e-215 752.7 698 57.9
Nitab4.5_0004070g0080 Nicotiana tabacum HOM05D006226 ORTHO05D007738 3.5e-212 742.3 672 56.4
Cpa.g.sc23.97 Carica papaya HOM05D006226 ORTHO05D007738 2.3e-211 739.6 618 62.8
AUR62010999 Chenopodium quinoa HOM05D006226 ORTHO05D007738 4.0e-208 728.8 719 55.2
Actinidia32679 Actinidia chinensis HOM05D006226 ORTHO05D007738 6.9e-208 728.0 626 60.7
AUR62021510 Chenopodium quinoa HOM05D006226 ORTHO05D007738 1.2e-207 727.2 721 55.1
Cc06_g09770 Coffea canephora HOM05D006226 ORTHO05D007738 3.4e-207 725.7 661 57.8
PGSC0003DMG400026545 Solanum tuberosum HOM05D006226 ORTHO05D007738 2.2e-206 723.0 648 57.7
Sc16g0007880 Simmondsia chinensis HOM05D006226 ORTHO05D007738 3.8e-206 722.2 713 54.8
Sopen11g026750 Solanum pennellii HOM05D006226 ORTHO05D007738 8.4e-206 721.1 670 55.8
CAN.G644.14 Capsicum annuum HOM05D006226 ORTHO05D007738 3.0e-203 712.6 651 56.2
PSO210G0226 Papaver somniferum HOM05D006226 ORTHO05D007738 6.6e-203 711.4 650 58.5
PSO210G1415 Papaver somniferum HOM05D006226 ORTHO05D007738 6.6e-203 711.4 650 58.6
FAN28G0796 Fragaria x ananassa HOM05D006226 ORTHO05D007738 6.2e-201 704.9 624 59.8
HanXRQChr12g0354991 Helianthus annuus HOM05D006226 ORTHO05D007738 2.4e-200 703.0 713 53.7
PGR142G1694 Punica granatum HOM05D006226 ORTHO05D007738 1.3e-198 697.2 651 58.5
AT3G24560 Arabidopsis thaliana HOM05D006226 ORTHO05D007738 9.3e-197 691.0 711 54.1
AL3G40100 Arabidopsis lyrata HOM05D006226 ORTHO05D007738 2.1e-196 689.9 636 58.8
CARHR100790 Cardamine hirsuta HOM05D006226 ORTHO05D007738 1.1e-194 684.1 651 57.1
Nitab4.5_0006735g0020 Nicotiana tabacum HOM05D006226 ORTHO05D007738 2.8e-193 679.5 681 52.3
THA.LOC104808766 Tarenaya hassleriana HOM05D006226 ORTHO05D007738 1.2e-191 674.1 688 53.9
ECA233G1203 Erigeron canadensis HOM05D006226 ORTHO05D007738 1.5e-191 673.7 637 57.8
Carub.0003s2495 Capsella rubella HOM05D006226 ORTHO05D007738 5.8e-191 671.8 713 52.7
Sp3g22350 Schrenkiella parvula HOM05D006226 ORTHO05D007738 2.9e-190 669.5 649 56.1
CsaV3_1G025440 Cucumis sativus L. HOM05D006226 ORTHO05D007738 8.4e-190 667.9 546 63.4
BraA07t28567Z Brassica rapa HOM05D006226 ORTHO05D007738 1.4e-189 667.2 648 54.9
Thhalv10002431m.g Eutrema salsugineum HOM05D006226 ORTHO05D007738 1.4e-189 667.2 649 55.2
BcaC06g35722 Brassica carinata HOM05D006226 ORTHO05D007738 5.5e-189 665.2 648 55.2
BolC7t41639H Brassica oleracea HOM05D006226 ORTHO05D007738 5.5e-189 665.2 648 55.2
BcaB06g26659 Brassica carinata HOM05D006226 ORTHO05D007738 2.7e-188 662.9 648 55.6
C07p11670 Brassica napus HOM05D006226 ORTHO05D007738 2.7e-188 662.9 648 54.9
DCAR_002532 Daucus carota HOM05D006226 ORTHO05D007738 7.9e-188 661.4 642 53.9
A07p07760 Brassica napus HOM05D006226 ORTHO05D007738 6.7e-187 658.3 670 53.7
Migut.C00317 Erythranthe guttata HOM05D006226 ORTHO05D007738 4.6e-180 635.6 663 52.5
Lsat_1_v5_gn_8_3640 Lactuca sativa HOM05D006226 ORTHO05D007738 5.7e-178 628.6 693 51.1
SalBow6G3053 Salvia bowleyana HOM05D006226 ORTHO05D007738 9.6e-178 627.9 650 52.8
Migut.G00900 Erythranthe guttata HOM05D006226 ORTHO05D007738 2.1e-177 626.7 651 52.1
Atru.chr7.1363 Acer truncatum HOM05D006226 ORTHO05D007738 6.3e-177 625.2 480 67.5
Gohir.D05G025200 Gossypium hirsutum HOM05D006226 ORTHO05D007738 4.1e-176 622.5 532 61.1
Aa31sc29G50 Aethionema arabicum HOM05D006226 ORTHO05D007738 1.0e-174 617.8 727 49.1
CANSAT56G4481 Cannabis sativa HOM05D006226 ORTHO05D007738 2.2e-174 616.7 507 62.3
Migut.K01516 Erythranthe guttata HOM05D006226 ORTHO05D007738 7.2e-173 611.7 664 50.6
Thecc.09G109000 Theobroma cacao HOM05D006226 ORTHO05D007738 4.1e-168 595.9 451 65.2
Hund09200 Selenicereus undatus HOM05D006226 ORTHO05D007738 1.6e-164 583.9 715 48.8
CSS0010508 Camellia sinensis var. sinensis HOM05D006226 ORTHO05D007738 1.1e-162 577.8 614 53.6
SGA_v2.0_scaffold57G20229 Striga asiatica HOM05D006226 ORTHO05D007738 5.7e-162 575.5 717 46.3
Zm00001eb237720 Zea mays HOM05D006226 ORTHO05D007738 7.4e-162 575.1 688 46.1
EL10Ac8g18501 Beta vulgaris HOM05D006226 ORTHO05D007738 3.7e-161 572.8 699 50.2
CSS0044649 Camellia sinensis var. sinensis HOM05D006226 ORTHO05D007738 2.5e-157 560.1 614 52.9
Ah.14g081980 Amaranthus hybridus HOM05D006226 ORTHO05D007738 5.9e-151 538.9 531 53.9
Haze_25736 Corylus avellana HOM05D006226 ORTHO05D007738 1.2e-148 531.2 312 82.4
MBI04_g22018_MAGBIO Magnolia biondii HOM05D006226 ORTHO05D007738 4.4e-146 522.7 383 68.7
Oeu002240.1 Olea europaea HOM05D006226 ORTHO05D007738 3.1e-144 516.5 496 54.8
Nn8g39152 Nelumbo nucifera HOM05D006226 ORTHO05D007738 8.3e-137 491.9 360 68.1
Lalb_Chr06g0174391 Lupinus albus HOM05D006226 ORTHO05D007738 4.5e-127 459.5 296 74.0
unitig_748.g7367 Utricularia gibba HOM05D006226 ORTHO05D007738 3.6e-116 423.3 695 39.0
Hma1.2p1_1463F.1_g285100 Hydrangea macrophylla HOM05D006226 ORTHO05D007738 8.3e-113 412.1 410 57.6
ATR0315G013 Amborella trichopoda HOM05D006226 ORTHO05D007738 1.7e-105 387.9 307 63.8
AagrBONN_evm.TU.Sc2ySwM_368.2586 Anthoceros agrestis HOM05D006226 ORTHO05D007738 2.1e-103 380.9 663 36.3
Solyc11g067040.2 Solanum lycopersicum HOM05D006226 ORTHO05D007738 3.9e-102 376.7 343 57.4
Peaxi162Scf01284g00025 Petunia axillaris HOM05D006226 ORTHO05D007738 2.1e-100 370.9 336 57.7
Peaxi162Scf01284g00019 Petunia axillaris HOM05D006226 ORTHO05D007738 7.1e-96 355.9 376 51.3
Lalb_Chr06g0174401 Lupinus albus HOM05D006226 ORTHO05D007738 8.7e-94 349.0 327 55.0
Solyc11g067030.2 Solanum lycopersicum HOM05D006226 ORTHO05D007738 2.8e-92 344.0 376 50.3
Mapoly0045s0077 Marchantia polymorpha HOM05D006226 ORTHO05D007738 1.7e-89 334.7 705 33.5
ECA234G2375 Erigeron canadensis HOM05D006226 ORTHO05D007738 3.6e-84 317.0 615 35.6
MBI04_g29967_MAGBIO Magnolia biondii HOM05D006226 ORTHO05D007738 5.1e-78 296.6 402 46.5
SMO170G0077 Selaginella moellendorffii HOM05D006226 ORTHO05D007738 1.3e-76 292.0 646 32.4
Hma1.2p1_1463F.1_g285110 Hydrangea macrophylla HOM05D006226 ORTHO05D007738 1.1e-75 288.9 319 54.2
Pp3c5_3840 Physcomitrium patens HOM05D006226 ORTHO05D007738 1.5e-69 268.5 561 32.6
ATR0315G018 Amborella trichopoda HOM05D006226 ORTHO05D007738 2.4e-59 234.6 333 42.3
CDE04G3650 Ceratophyllum demersum HOM05D001758 ORTHO05D005969 5.9e-50 203.4 146 66.4
CANSAT56G3567 Cannabis sativa HOM05D006226 ORTHO05D007738 1.6e-47 195.3 119 75.6
Nitab4.5_0004070g0110 Nicotiana tabacum HOM05D006226 ORTHO05D007738 6.7e-46 189.9 257 43.2
SGA_v2.0_scaffold88G27188 Striga asiatica HOM05D006226 ORTHO05D007738 1.1e-40 172.6 188 47.3
SGA_v2.0_scaffold3110G54276 Striga asiatica HOM05D006226 ORTHO05D007738 6.7e-38 163.3 120 63.3
CBR_g23439 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-37 162.2 244 41.0
Nitab4.5_0004070g0120 Nicotiana tabacum HOM05D006226 ORTHO05D007738 3.7e-36 157.5 194 44.3
Os02g0266500 Oryza sativa ssp. japonica HOM05D006226 ORTHO05D007738 3.7e-36 157.5 123 62.6
SEGI_09304 Sequoiadendron giganteum HOM05D006226 ORTHO05D007738 2.0e-29 135.2 144 45.1
HanXRQChr00c0062g0571541 Helianthus annuus HOM05D006226 ORTHO05D007738 1.3e-25 122.5 183 38.3
Lsat_1_v5_gn_4_168221 Lactuca sativa HOM05D006226 ORTHO05D007738 4.7e-23 114.0 129 47.3
Actinidia07412 Actinidia chinensis HOM05D006226 ORTHO05D007738 8.3e-20 103.2 299 30.8
HPP92_005262 Vanilla planifolia HOM05D006226 ORTHO05D007738 9.1e-19 99.8 77 63.6
SEGI_25817 Sequoiadendron giganteum HOM05D006226 ORTHO05D007738 4.5e-18 97.4 78 60.3
HanXRQChr00c0062g0571551 Helianthus annuus HOM05D006226 ORTHO05D007738 1.7e-17 95.5 115 47.0
CDE04G0435 Ceratophyllum demersum HOM05D006226 ORTHO05D007738 2.9e-17 94.7 184 34.2
Medtr6g087540 Medicago truncatula HOM05D006226 ORTHO05D007738 7.5e-13 80.1 136 36.8
Pp3c24_3750 Physcomitrium patens HOM05D028917 ORTHO05D023487 5.4e-11 73.9 298 24.8
MCO09G126 Micromonas commoda HOM05D006226 ORTHO05D007738 9.2e-11 73.2 212 27.8
HPP92_005261 Vanilla planifolia HOM05D006226 ORTHO05D007738 5.9e-10 70.5 72 47.2
PRCOL_00000419 Prasinoderma coloniale HOM05D006226 ORTHO05D023487 1.0e-09 69.7 219 24.7
Cre13.g572800 Chlamydomonas reinhardtii HOM05D028917 ORTHO05D023487 2.8e-07 61.6 146 29.5


User provided reference genes

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