Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p036870 Quercus lobata HOM05D004811 ORTHO05D006888 0.0e+00 1082.8 534 100.0
QL02p036407 Quercus lobata HOM05D004811 ORTHO05D006888 1.3e-307 1058.9 524 99.2
CiPaw.16G007200 Carya illinoinensis HOM05D004811 ORTHO05D006888 1.0e-288 996.1 526 91.4
Cfa018260 Carpinus fangiana HOM05D004811 ORTHO05D006888 3.0e-288 994.6 531 91.1
CSS0026504 Camellia sinensis var. sinensis HOM05D004811 ORTHO05D006888 1.6e-281 972.2 514 90.5
Dinv04542 Davidia involucrata HOM05D004811 ORTHO05D006888 6.0e-281 970.3 514 90.3
Manes.14G160925 Manihot esculenta HOM05D004811 ORTHO05D006888 1.7e-280 968.8 529 88.7
Prupe.1G353000 Prunus persica HOM05D004811 ORTHO05D006888 6.6e-280 966.8 522 89.1
MD09G1000100 Malus domestica HOM05D004811 ORTHO05D006888 1.1e-279 966.1 519 89.0
Atru.chr1.2074 Acer truncatum HOM05D004811 ORTHO05D006888 1.9e-279 965.3 522 88.3
GSVIVG01032296001 Vitis vinifera HOM05D004811 ORTHO05D006888 1.2e-276 956.1 522 87.5
TAR636G1158 Trochodendron aralioides HOM05D004811 ORTHO05D006888 2.0e-276 955.3 520 88.8
TWI18G0824 Tripterygium wilfordii HOM05D004811 ORTHO05D006888 2.6e-276 954.9 523 87.8
arahy.Tifrunner.gnm1.ann1.21VBB5 Arachis hypogaea HOM05D004811 ORTHO05D006888 1.7e-275 952.2 520 86.9
Phvul.004G051000 Phaseolus vulgaris HOM05D004811 ORTHO05D006888 4.9e-275 950.7 520 88.1
Nn4g25146 Nelumbo nucifera HOM05D004811 ORTHO05D006888 1.1e-274 949.5 522 88.3
Duzib106G1219 Durio zibethinus HOM05D004811 ORTHO05D006888 5.4e-274 947.2 514 88.3
Ca_04451_v3 Cicer arietinum L. HOM05D004811 ORTHO05D006888 7.1e-274 946.8 514 88.3
Rhsim11G0174100 Rhododendron simsii HOM05D004811 ORTHO05D006888 7.1e-274 946.8 514 87.9
Glyma.19G064500 Glycine max HOM05D004811 ORTHO05D006888 2.1e-273 945.3 514 87.9
VMungo0464G0703 Vigna mungo HOM05D004811 ORTHO05D006888 2.1e-273 945.3 514 88.5
RcHm_v2.0_Chr7g0218051 Rosa chinensis HOM05D004811 ORTHO05D006888 3.0e-272 941.4 522 86.8
Thecc.10G126600 Theobroma cacao HOM05D004811 ORTHO05D006888 5.1e-272 940.6 514 87.5
arahy.Tifrunner.gnm1.ann1.BVJW9Q Arachis hypogaea HOM05D004811 ORTHO05D006888 2.5e-271 938.3 539 84.0
Solyc10g050540.2 Solanum lycopersicum HOM05D004811 ORTHO05D006888 9.6e-271 936.4 510 86.9
Sopen10g022210 Solanum pennellii HOM05D004811 ORTHO05D006888 9.6e-271 936.4 510 86.9
MBI19_g06604_MAGBIO Magnolia biondii HOM05D004811 ORTHO05D006888 1.3e-270 936.0 523 86.0
COL.COLO4_04346 Corchorus olitorius HOM05D004811 ORTHO05D006888 2.1e-270 935.3 514 87.9
Lj5C205G23 Lonicera japonica HOM05D004811 ORTHO05D006888 2.8e-270 934.9 537 85.1
Ciclev10011123m.g Citrus clementina HOM05D004811 ORTHO05D006888 1.1e-269 932.9 516 86.6
FvH4_5g27050 Fragaria vesca HOM05D004811 ORTHO05D006888 1.4e-269 932.6 516 87.0
Cc02_g18400 Coffea canephora HOM05D004811 ORTHO05D006888 2.4e-269 931.8 514 85.6
Potri.003G106200 Populus trichocarpa HOM05D004811 ORTHO05D006888 5.3e-269 930.6 514 85.8
vmacro10447 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 9.0e-269 929.9 522 86.0
Oeu013671.1 Olea europaea HOM05D004811 ORTHO05D006888 1.2e-268 929.5 514 85.6
Lalb_Chr06g0174221 Lupinus albus HOM05D004811 ORTHO05D006888 3.4e-268 927.9 516 86.8
Gorai.N006700 Gossypium raimondii HOM05D004811 ORTHO05D006888 9.9e-268 926.4 514 86.2
PSO339G3970 Papaver somniferum HOM05D004811 ORTHO05D006888 9.9e-268 926.4 519 86.1
CsaV3_4G031660 Cucumis sativus L. HOM05D004811 ORTHO05D006888 6.4e-267 923.7 522 84.9
Gohir.D06G178500 Gossypium hirsutum HOM05D004811 ORTHO05D006888 1.4e-266 922.5 514 86.0
Psat1g085480 Pisum sativum HOM05D004811 ORTHO05D006888 1.9e-266 922.2 514 85.4
FAN18G4560 Fragaria x ananassa HOM05D004811 ORTHO05D006888 2.7e-265 918.3 521 85.6
Ah.02g115100 Amaranthus hybridus HOM05D004811 ORTHO05D006888 8.7e-264 913.3 521 82.3
MSTRG.5372 Avicennia marina HOM05D004811 ORTHO05D006888 2.5e-263 911.8 514 83.1
ECA240G1163 Erigeron canadensis HOM05D004811 ORTHO05D006888 2.5e-263 911.8 528 82.6
Sed0008285 Sechium edule HOM05D004811 ORTHO05D006888 2.8e-262 908.3 522 82.8
Lj2g0018835 Lotus japonicus HOM05D004811 ORTHO05D006888 6.2e-262 907.1 532 82.9
ATR0307G027 Amborella trichopoda HOM05D004811 ORTHO05D006888 1.1e-261 906.4 514 85.0
FAN04G3268 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.8e-261 905.6 542 82.5
Medtr6g026900 Medicago truncatula HOM05D004811 ORTHO05D006888 4.0e-261 904.4 514 84.2
Eucgr.K03557 Eucalyptus grandis HOM05D004811 ORTHO05D006888 2.6e-260 901.7 520 82.5
PGR044G1247 Punica granatum HOM05D004811 ORTHO05D006888 1.7e-259 899.0 510 83.7
Migut.N01206 Erythranthe guttata HOM05D004811 ORTHO05D006888 2.2e-259 898.7 519 81.5
FAN08G1445 Fragaria x ananassa HOM05D004811 ORTHO05D006888 9.3e-258 893.3 556 80.2
Lsat_1_v5_gn_9_108940 Lactuca sativa HOM05D004811 ORTHO05D006888 4.6e-257 891.0 513 83.4
Gohir.A06G170700 Gossypium hirsutum HOM05D004811 ORTHO05D006888 3.9e-256 887.9 514 82.9
HanXRQChr03g0072161 Helianthus annuus HOM05D004811 ORTHO05D006888 8.7e-256 886.7 522 81.6
THA.LOC104812205 Tarenaya hassleriana HOM05D004811 ORTHO05D006888 3.7e-254 881.3 520 80.6
PSO384G3007 Papaver somniferum HOM05D004811 ORTHO05D006888 4.8e-254 880.9 519 82.3
MELO3C008873.2 Cucumis melo HOM05D004811 ORTHO05D006888 8.2e-254 880.2 522 81.6
EL10Ac5g11622 Beta vulgaris HOM05D004811 ORTHO05D006888 3.1e-253 878.2 512 81.8
Peaxi162Scf00003g01938 Petunia axillaris HOM05D004811 ORTHO05D006888 5.9e-252 874.0 510 82.5
Aqoxy1G00017 Aquilegia oxysepala HOM05D004811 ORTHO05D006888 8.5e-251 870.2 520 81.3
Haze_17837 Corylus avellana HOM05D004811 ORTHO05D006888 7.2e-250 867.1 516 83.9
Haze_17831 Corylus avellana HOM05D004811 ORTHO05D006888 2.7e-249 865.1 516 83.7
AL1G30120 Arabidopsis lyrata HOM05D004811 ORTHO05D006888 7.9e-249 863.6 514 78.4
Sp1g15840 Schrenkiella parvula HOM05D004811 ORTHO05D006888 4.3e-247 857.8 520 77.9
Carub.0001s1749 Capsella rubella HOM05D004811 ORTHO05D006888 5.7e-247 857.4 514 78.6
Thhalv10006915m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 2.2e-246 855.5 520 77.3
A08p30750 Brassica napus HOM05D004811 ORTHO05D006888 1.8e-245 852.4 520 76.7
C08p18170 Brassica napus HOM05D004811 ORTHO05D006888 9.1e-245 850.1 520 76.3
BolC8t49451H Brassica oleracea HOM05D004811 ORTHO05D006888 9.1e-245 850.1 520 76.3
Os12g0571900 Oryza sativa ssp. japonica HOM05D004811 ORTHO05D006888 1.2e-244 849.7 524 77.1
AT1G17760 Arabidopsis thaliana HOM05D004811 ORTHO05D006888 2.9e-243 845.1 514 76.7
Sc16g0003300 Simmondsia chinensis HOM05D004811 ORTHO05D006888 6.5e-243 844.0 531 77.6
vmacro02132 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 6.5e-243 844.0 471 86.2
CARHR018370 Cardamine hirsuta HOM05D004811 ORTHO05D006888 3.2e-242 841.6 520 76.0
PSO210G4088 Papaver somniferum HOM05D004811 ORTHO05D006888 3.2e-242 841.6 514 78.2
BraA08t35006Z Brassica rapa HOM05D004811 ORTHO05D006888 7.2e-242 840.5 544 73.5
Aa31LG10G8540 Aethionema arabicum HOM05D004811 ORTHO05D006888 2.1e-241 839.0 520 77.1
BcaC07g38890 Brassica carinata HOM05D004811 ORTHO05D006888 3.3e-239 831.6 520 75.0
PSO210G7430 Papaver somniferum HOM05D004811 ORTHO05D006888 5.7e-239 830.9 519 76.9
PSO210G5098 Papaver somniferum HOM05D004811 ORTHO05D006888 6.3e-238 827.4 514 77.0
Nitab4.5_0000876g0200 Nicotiana tabacum HOM05D004811 ORTHO05D006888 8.2e-238 827.0 510 79.8
Sabra03G0073000 Salix brachista HOM05D004811 ORTHO05D006888 3.2e-234 815.1 683 62.7
ClCG04G004820 Citrullus lanatus HOM05D004811 ORTHO05D006888 1.6e-228 796.2 440 86.8
CDE09G0881 Ceratophyllum demersum HOM05D004811 ORTHO05D006888 1.5e-226 789.6 516 74.4
SGA_v2.0_scaffold55G19835 Striga asiatica HOM05D004811 ORTHO05D006888 1.4e-224 783.1 527 71.9
Mapoly0001s0525 Marchantia polymorpha HOM05D004811 ORTHO05D006888 1.2e-220 770.0 511 70.1
DCAR_022066 Daucus carota HOM05D004811 ORTHO05D006888 1.1e-213 746.9 522 70.5
HPP92_012441 Vanilla planifolia HOM05D004811 ORTHO05D006888 3.8e-211 738.4 518 70.1
SEGI_25586 Sequoiadendron giganteum HOM05D004811 ORTHO05D006888 1.3e-206 723.4 517 67.9
FAN13G1880 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.7e-206 723.0 397 88.7
Pp3c3_19050 Physcomitrium patens HOM05D004811 ORTHO05D006888 2.2e-206 722.6 518 65.4
AUR62037093 Chenopodium quinoa HOM05D004811 ORTHO05D006888 1.4e-205 719.9 510 70.4
Psat2g043000 Pisum sativum HOM05D004811 ORTHO05D006888 1.3e-198 696.8 515 68.7
RcHm_v2.0_Chr2g0146051 Rosa chinensis HOM05D004811 ORTHO05D006888 2.2e-198 696.0 525 65.0
SMO356G0171 Selaginella moellendorffii HOM05D004811 ORTHO05D006888 5.4e-197 691.4 522 62.5
AUR62036481 Chenopodium quinoa HOM05D004811 ORTHO05D006888 2.3e-195 686.0 510 67.6
CBR_g19801 Chara braunii HOM05D004811 ORTHO05D006888 6.8e-192 674.5 524 61.5
FvH4_6g34990 Fragaria vesca HOM05D004811 ORTHO05D006888 5.4e-189 664.8 525 61.9
FAN05G0989 Fragaria x ananassa HOM05D004811 ORTHO05D006888 7.0e-189 664.5 525 61.9
FAN14G1986 Fragaria x ananassa HOM05D004811 ORTHO05D006888 4.3e-186 655.2 525 61.1
FAN09G3976 Fragaria x ananassa HOM05D004811 ORTHO05D006888 6.2e-185 651.4 525 61.1
AagrBONN_evm.TU.Sc2ySwM_362.2211 Anthoceros agrestis HOM05D004811 ORTHO05D006888 5.8e-183 644.8 472 63.8
Actinidia00514 Actinidia chinensis HOM05D004811 ORTHO05D006888 1.6e-180 636.7 510 64.7
Cpa.g.sc111.49 Carica papaya HOM05D004811 ORTHO05D006888 6.0e-180 634.8 334 90.1
unitig_8.g3575 Utricularia gibba HOM05D004811 ORTHO05D006888 2.0e-159 566.6 519 57.0
HPP92_028180 Vanilla planifolia HOM05D004811 ORTHO05D006888 3.8e-134 482.6 412 60.0
Hund15153 Selenicereus undatus HOM05D004811 ORTHO05D006888 2.3e-107 393.7 224 81.7
Nitab4.5_0016907g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 2.2e-105 387.1 212 89.2
CAN.G606.11 Capsicum annuum HOM05D004811 ORTHO05D006888 2.7e-103 380.2 238 77.3
CAN.G606.10 Capsicum annuum HOM05D004811 ORTHO05D006888 7.2e-93 345.5 182 91.2
MCO07G203 Micromonas commoda HOM05D004811 ORTHO05D006888 7.2e-93 345.5 578 34.3
PRCOL_00007255 Prasinoderma coloniale HOM05D004811 ORTHO05D006888 1.6e-92 344.4 520 37.7
Zm00001eb287160 Zea mays HOM05D004811 ORTHO05D006888 2.2e-89 334.0 208 77.4
Cre12.g506050 Chlamydomonas reinhardtii HOM05D004811 ORTHO05D006888 4.0e-83 313.2 522 35.8
Nitab4.5_0009440g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 6.2e-60 236.1 135 80.7
Actinidia09194 Actinidia chinensis HOM05D004811 ORTHO05D006888 1.1e-53 215.3 132 81.1
Sed0006977 Sechium edule HOM05D004811 ORTHO05D006888 2.2e-49 201.1 128 75.8
TPR.G33000 Trifolium pratense HOM05D004811 ORTHO05D006888 2.4e-48 197.6 107 85.0
HPP92_028179 Vanilla planifolia HOM05D004811 ORTHO05D006888 1.1e-43 182.2 112 78.6
Actinidia09197 Actinidia chinensis HOM05D004811 ORTHO05D006888 1.4e-32 145.2 148 53.4
CAN.G606.9 Capsicum annuum HOM05D004811 ORTHO05D006888 2.3e-30 137.9 78 82.1
Thhalv10029084m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 1.1e-19 102.4 66 75.8
Actinidia09195 Actinidia chinensis HOM05D004811 ORTHO05D006888 2.4e-19 101.3 55 81.8
Actinidia09206 Actinidia chinensis HOM05D004811 ORTHO05D009793 8.5e-17 92.8 148 42.6
SalBow3G0991 Salvia bowleyana HOM05D004811 ORTHO05D006888 1.9e-16 91.7 62 67.7
Mapoly0104s0010 Marchantia polymorpha HOM05D002279 ORTHO05D002644 2.5e-16 91.3 560 20.5
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 3.9e-14 84.0 494 22.3
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 1.3e-12 79.0 466 20.4
Cpa.g.sc111.48 Carica papaya HOM05D004811 ORTHO05D006888 1.4e-11 75.5 43 81.4
HPP92_021812 Vanilla planifolia HOM05D002279 ORTHO05D002644 5.9e-10 70.1 517 21.1
Sed0024483 Sechium edule HOM05D004811 ORTHO05D006888 2.9e-09 67.8 39 74.4
PSO541G4576 Papaver somniferum HOM05D000002 ORTHO05D000001 3.8e-09 67.4 59 52.5
ClCG04G004810 Citrullus lanatus HOM05D004811 ORTHO05D044609 4.2e-08 63.9 99 41.4
Os03g0210400 Oryza sativa ssp. japonica HOM05D002279 ORTHO05D002644 1.2e-07 62.4 345 21.2
Sed0000937 Sechium edule HOM05D004811 ORTHO05D044609 1.6e-07 62.0 48 62.5
Zm00001eb007090 Zea mays HOM05D002279 ORTHO05D002644 6.1e-07 60.1 346 20.8
Sed0023704 Sechium edule HOM05D002279 ORTHO05D002644 8.8e-06 56.2 365 20.3


User provided reference genes

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