Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p036851 Quercus lobata HOM05D004811 ORTHO05D006888 2.7e-211 738.4 378 100.0
QL02p036387 Quercus lobata HOM05D004811 ORTHO05D006888 4.0e-122 442.2 378 68.8
Haze_17831 Corylus avellana HOM05D004811 ORTHO05D006888 1.1e-100 370.9 249 81.9
Haze_17837 Corylus avellana HOM05D004811 ORTHO05D006888 1.1e-100 370.9 249 81.9
Cfa018260 Carpinus fangiana HOM05D004811 ORTHO05D006888 1.5e-100 370.5 249 81.5
CiPaw.16G007200 Carya illinoinensis HOM05D004811 ORTHO05D006888 2.7e-94 349.7 250 76.4
Manes.14G160925 Manihot esculenta HOM05D004811 ORTHO05D006888 1.1e-82 311.2 240 72.5
Atru.chr1.2074 Acer truncatum HOM05D004811 ORTHO05D006888 3.1e-82 309.7 241 70.1
GSVIVG01032296001 Vitis vinifera HOM05D004811 ORTHO05D006888 3.8e-80 302.8 242 67.8
Thecc.10G126600 Theobroma cacao HOM05D004811 ORTHO05D006888 3.6e-78 296.2 241 68.0
TWI18G0824 Tripterygium wilfordii HOM05D004811 ORTHO05D006888 4.7e-78 295.8 237 67.1
Dinv04542 Davidia involucrata HOM05D004811 ORTHO05D006888 3.9e-77 292.7 237 67.5
TAR636G1158 Trochodendron aralioides HOM05D004811 ORTHO05D006888 3.3e-76 289.7 248 67.7
Actinidia00514 Actinidia chinensis HOM05D004811 ORTHO05D006888 7.4e-76 288.5 236 65.7
Prupe.1G353000 Prunus persica HOM05D004811 ORTHO05D006888 7.4e-76 288.5 242 68.2
Rhsim11G0174100 Rhododendron simsii HOM05D004811 ORTHO05D006888 6.3e-75 285.4 241 66.4
Eucgr.K03557 Eucalyptus grandis HOM05D004811 ORTHO05D006888 1.1e-74 284.6 242 67.4
COL.COLO4_04346 Corchorus olitorius HOM05D004811 ORTHO05D006888 5.3e-74 282.3 240 65.4
PGR044G1247 Punica granatum HOM05D004811 ORTHO05D006888 5.3e-74 282.3 240 66.2
CsaV3_4G031660 Cucumis sativus L. HOM05D004811 ORTHO05D006888 7.0e-74 282.0 239 67.4
FvH4_5g27050 Fragaria vesca HOM05D004811 ORTHO05D006888 7.0e-74 282.0 241 68.0
Duzib106G1219 Durio zibethinus HOM05D004811 ORTHO05D006888 1.2e-73 281.2 255 62.7
FAN04G3268 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.6e-73 280.8 241 67.2
FAN18G4560 Fragaria x ananassa HOM05D004811 ORTHO05D006888 2.6e-73 280.0 242 67.4
FAN08G1445 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.3e-72 277.7 252 64.3
RcHm_v2.0_Chr7g0218051 Rosa chinensis HOM05D004811 ORTHO05D006888 1.3e-72 277.7 248 66.9
Ciclev10011123m.g Citrus clementina HOM05D004811 ORTHO05D006888 5.0e-72 275.8 243 64.2
FAN13G1880 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.9e-71 273.9 242 67.4
vmacro02132 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 1.8e-69 267.3 236 65.3
Lj5C205G23 Lonicera japonica HOM05D004811 ORTHO05D006888 2.3e-69 266.9 237 62.9
vmacro10447 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 4.0e-69 266.2 236 64.8
Psat1g085480 Pisum sativum HOM05D004811 ORTHO05D006888 3.3e-68 263.1 236 63.1
Gohir.D06G178500 Gossypium hirsutum HOM05D004811 ORTHO05D006888 4.4e-68 262.7 254 59.1
Lj2g0018835 Lotus japonicus HOM05D004811 ORTHO05D006888 7.5e-68 261.9 236 61.9
Gohir.A06G170700 Gossypium hirsutum HOM05D004811 ORTHO05D006888 1.3e-67 261.2 254 58.7
Gorai.N006700 Gossypium raimondii HOM05D004811 ORTHO05D006888 1.3e-67 261.2 254 59.1
Sed0024483 Sechium edule HOM05D004811 ORTHO05D006888 2.2e-67 260.4 241 63.9
Sed0008285 Sechium edule HOM05D004811 ORTHO05D006888 2.8e-67 260.0 243 63.8
DCAR_022066 Daucus carota HOM05D004811 ORTHO05D006888 1.1e-66 258.1 238 59.7
Sabra03G0073000 Salix brachista HOM05D004811 ORTHO05D006888 1.8e-66 257.3 236 64.8
CSS0026504 Camellia sinensis var. sinensis HOM05D004811 ORTHO05D006888 1.2e-65 254.6 211 66.8
Ca_04451_v3 Cicer arietinum L. HOM05D004811 ORTHO05D006888 1.6e-65 254.2 238 62.6
Lalb_Chr06g0174221 Lupinus albus HOM05D004811 ORTHO05D006888 7.7e-65 251.9 240 60.4
VMungo0464G0703 Vigna mungo HOM05D004811 ORTHO05D006888 2.2e-64 250.4 246 59.3
Potri.003G106200 Populus trichocarpa HOM05D004811 ORTHO05D006888 5.0e-64 249.2 242 62.0
ClCG04G004820 Citrullus lanatus HOM05D004811 ORTHO05D006888 5.5e-63 245.7 239 63.2
Nn4g25146 Nelumbo nucifera HOM05D004811 ORTHO05D006888 9.4e-63 245.0 245 62.0
Phvul.004G051000 Phaseolus vulgaris HOM05D004811 ORTHO05D006888 1.2e-62 244.6 247 59.5
arahy.Tifrunner.gnm1.ann1.21VBB5 Arachis hypogaea HOM05D004811 ORTHO05D006888 6.1e-62 242.3 244 59.0
Aqoxy1G00017 Aquilegia oxysepala HOM05D004811 ORTHO05D006888 8.0e-62 241.9 247 59.5
Nitab4.5_0016907g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 8.0e-62 241.9 241 58.5
arahy.Tifrunner.gnm1.ann1.BVJW9Q Arachis hypogaea HOM05D004811 ORTHO05D006888 1.4e-61 241.1 244 58.6
Nitab4.5_0000876g0200 Nicotiana tabacum HOM05D004811 ORTHO05D006888 2.3e-61 240.4 240 59.2
Peaxi162Scf00003g01938 Petunia axillaris HOM05D004811 ORTHO05D006888 3.0e-61 240.0 240 57.9
Sc16g0003300 Simmondsia chinensis HOM05D004811 ORTHO05D006888 3.0e-61 240.0 236 59.7
TPR.G39924 Trifolium pratense HOM05D004811 ORTHO05D006888 3.0e-61 240.0 217 64.5
Glyma.19G064500 Glycine max HOM05D004811 ORTHO05D006888 5.2e-61 239.2 249 57.8
Medtr6g026900 Medicago truncatula HOM05D004811 ORTHO05D006888 6.8e-61 238.8 236 60.2
PSO339G3970 Papaver somniferum HOM05D004811 ORTHO05D006888 4.8e-59 232.6 248 57.3
EL10Ac5g11622 Beta vulgaris HOM05D004811 ORTHO05D006888 1.8e-58 230.7 237 56.1
Solyc10g050540.2 Solanum lycopersicum HOM05D004811 ORTHO05D006888 4.1e-58 229.6 242 57.4
PSO384G3007 Papaver somniferum HOM05D004811 ORTHO05D006888 1.2e-57 228.0 250 57.2
Sopen10g022210 Solanum pennellii HOM05D004811 ORTHO05D006888 1.6e-57 227.6 242 57.0
Cc02_g18400 Coffea canephora HOM05D004811 ORTHO05D006888 5.0e-56 222.6 236 55.9
AUR62036481 Chenopodium quinoa HOM05D004811 ORTHO05D006888 6.5e-56 222.2 237 53.6
Oeu013671.1 Olea europaea HOM05D004811 ORTHO05D006888 1.1e-55 221.5 253 54.2
MBI19_g06604_MAGBIO Magnolia biondii HOM05D004811 ORTHO05D006888 1.5e-55 221.1 248 56.0
Ah.02g115100 Amaranthus hybridus HOM05D004811 ORTHO05D006888 1.6e-54 217.6 237 52.3
Psat2g043000 Pisum sativum HOM05D004811 ORTHO05D006888 1.0e-53 214.9 236 55.1
MSTRG.5372 Avicennia marina HOM05D004811 ORTHO05D006888 4.0e-53 213.0 236 53.8
THA.LOC104812205 Tarenaya hassleriana HOM05D004811 ORTHO05D006888 6.8e-53 212.2 243 54.7
AUR62037093 Chenopodium quinoa HOM05D004811 ORTHO05D006888 1.1e-50 204.9 248 49.6
Cpa.g.sc111.45 Carica papaya HOM05D004811 ORTHO05D006888 1.4e-50 204.5 174 67.2
CAN.G606.9 Capsicum annuum HOM05D004811 ORTHO05D006888 1.6e-49 201.1 282 47.9
A08p30750 Brassica napus HOM05D004811 ORTHO05D006888 1.9e-47 194.1 243 48.6
BraA08t35006Z Brassica rapa HOM05D004811 ORTHO05D006888 1.9e-47 194.1 243 48.6
Aa31LG10G8540 Aethionema arabicum HOM05D004811 ORTHO05D006888 3.3e-47 193.4 244 50.4
Carub.0001s1749 Capsella rubella HOM05D004811 ORTHO05D006888 7.3e-47 192.2 243 49.0
AL1G30120 Arabidopsis lyrata HOM05D004811 ORTHO05D006888 4.7e-46 189.5 241 50.6
C08p18170 Brassica napus HOM05D004811 ORTHO05D006888 4.7e-46 189.5 243 48.6
BolC8t49451H Brassica oleracea HOM05D004811 ORTHO05D006888 4.7e-46 189.5 243 48.6
Sp1g15840 Schrenkiella parvula HOM05D004811 ORTHO05D006888 8.0e-46 188.7 241 48.5
AT1G17760 Arabidopsis thaliana HOM05D004811 ORTHO05D006888 8.9e-45 185.3 241 49.0
ECA240G1163 Erigeron canadensis HOM05D004811 ORTHO05D006888 3.4e-44 183.3 248 50.8
HPP92_012441 Vanilla planifolia HOM05D004811 ORTHO05D006888 1.7e-43 181.0 236 50.8
HanXRQChr03g0072161 Helianthus annuus HOM05D004811 ORTHO05D006888 4.9e-43 179.5 249 48.6
Hund15156 Selenicereus undatus HOM05D004811 ORTHO05D006888 3.5e-41 173.3 163 61.3
PSO210G5098 Papaver somniferum HOM05D004811 ORTHO05D006888 1.0e-40 171.8 244 48.4
BcaC07g38890 Brassica carinata HOM05D004811 ORTHO05D006888 3.0e-40 170.2 215 46.5
CARHR018370 Cardamine hirsuta HOM05D004811 ORTHO05D006888 9.5e-39 165.2 244 47.5
MELO3C008873.2 Cucumis melo HOM05D004811 ORTHO05D006888 1.2e-38 164.9 239 46.9
ATR0307G027 Amborella trichopoda HOM05D004811 ORTHO05D006888 3.4e-36 156.8 262 43.1
Os12g0571900 Oryza sativa ssp. japonica HOM05D004811 ORTHO05D006888 7.5e-36 155.6 243 44.0
unitig_8.g3575 Utricularia gibba HOM05D004811 ORTHO05D006888 3.2e-34 150.2 238 45.8
Thhalv10006915m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 2.0e-33 147.5 241 41.5
PSO210G4088 Papaver somniferum HOM05D004811 ORTHO05D006888 1.0e-32 145.2 265 43.8
PSO210G7430 Papaver somniferum HOM05D004811 ORTHO05D006888 1.0e-32 145.2 240 45.4
Migut.N01206 Erythranthe guttata HOM05D004811 ORTHO05D006888 3.6e-30 136.7 240 43.3
SEGI_25586 Sequoiadendron giganteum HOM05D004811 ORTHO05D006888 4.7e-30 136.3 248 41.5
Zm00001eb287160 Zea mays HOM05D004811 ORTHO05D006888 8.1e-30 135.6 252 40.1
Lsat_1_v5_gn_9_108940 Lactuca sativa HOM05D004811 ORTHO05D006888 1.1e-29 135.2 257 42.0
CDE09G0881 Ceratophyllum demersum HOM05D004811 ORTHO05D006888 4.0e-29 133.3 175 50.9
SGA_v2.0_scaffold753G53552 Striga asiatica HOM05D004811 ORTHO05D006888 1.2e-22 111.7 130 57.7
Pp3c3_19050 Physcomitrium patens HOM05D004811 ORTHO05D006888 7.3e-15 85.9 296 32.1
Cpa.g.sc111.48 Carica papaya HOM05D004811 ORTHO05D006888 1.1e-13 82.0 57 64.9
SMO356G0171 Selaginella moellendorffii HOM05D004811 ORTHO05D006888 4.0e-13 80.1 231 30.7
FAN09G3976 Fragaria x ananassa HOM05D004811 ORTHO05D006888 2.9e-11 73.9 226 35.0
Mapoly0001s0525 Marchantia polymorpha HOM05D004811 ORTHO05D006888 3.8e-11 73.6 288 29.2
Gohir.A02G097201 Gossypium hirsutum HOM05D004811 ORTHO05D006888 6.4e-11 72.8 86 44.2
C03p50580 Brassica napus HOM05D004811 ORTHO05D017514 1.1e-10 72.0 109 37.6
BolC3t17347H Brassica oleracea HOM05D004811 ORTHO05D017514 1.9e-10 71.2 106 36.8
C09p52830 Brassica napus HOM05D004811 ORTHO05D017514 3.2e-10 70.5 113 38.1
BolC9t58149H Brassica oleracea HOM05D004811 ORTHO05D017514 3.2e-10 70.5 113 38.1
FvH4_6g34990 Fragaria vesca HOM05D004811 ORTHO05D006888 5.4e-10 69.7 235 34.9
FAN14G1986 Fragaria x ananassa HOM05D004811 ORTHO05D006888 3.5e-09 67.0 235 34.5
RcHm_v2.0_Chr2g0146051 Rosa chinensis HOM05D004811 ORTHO05D006888 7.8e-09 65.9 233 34.8
BcaC04g19678 Brassica carinata HOM05D004811 ORTHO05D017514 1.3e-08 65.1 77 44.2
FAN05G0989 Fragaria x ananassa HOM05D004811 ORTHO05D006888 2.3e-08 64.3 226 33.2
AagrBONN_evm.TU.Sc2ySwM_362.2211 Anthoceros agrestis HOM05D004811 ORTHO05D006888 6.6e-08 62.8 255 29.0
Gohir.D12G169001 Gossypium hirsutum HOM05D023568 ORTHO05D005062 4.3e-07 60.1 43 69.8
Gorai.008G093100 Gossypium raimondii HOM05D004577 ORTHO05D005062 4.3e-07 60.1 52 61.5
Gorai.008G148200 Gossypium raimondii HOM05D004577 ORTHO05D005062 4.3e-07 60.1 52 61.5
Gorai.009G401800 Gossypium raimondii HOM05D004577 ORTHO05D005062 4.3e-07 60.1 52 61.5
SEGI_06326 Sequoiadendron giganteum HOM05D004811 ORTHO05D386588 9.6e-07 58.9 214 28.5
Gohir.D01G069250 Gossypium hirsutum HOM05D004811 ORTHO05D006888 3.6e-06 57.0 57 49.1


User provided reference genes

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