Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p028412 Quercus lobata HOM05D003472 ORTHO05D004200 1.3e-229 799.3 383 100.0
CiPaw.11G115400 Carya illinoinensis HOM05D003472 ORTHO05D004200 3.6e-195 684.9 383 83.8
Haze_09126 Corylus avellana HOM05D003472 ORTHO05D004200 2.9e-192 675.2 383 82.5
Haze_09134 Corylus avellana HOM05D003472 ORTHO05D004200 2.9e-192 675.2 383 82.5
CiPaw.12G079900 Carya illinoinensis HOM05D003472 ORTHO05D004200 1.0e-189 666.8 383 82.2
Cfa011959 Carpinus fangiana HOM05D003472 ORTHO05D004200 2.5e-188 662.1 383 81.2
Prupe.5G126300 Prunus persica HOM05D003472 ORTHO05D004200 2.1e-187 659.1 384 82.0
QL02p028420 Quercus lobata HOM05D003472 ORTHO05D004200 3.6e-187 658.3 383 80.9
RcHm_v2.0_Chr7g0186361 Rosa chinensis HOM05D003472 ORTHO05D004200 5.2e-186 654.4 384 79.7
FvH4_5g11460 Fragaria vesca HOM05D003472 ORTHO05D004200 1.6e-182 642.9 384 79.2
TAR629G3421 Trochodendron aralioides HOM05D003472 ORTHO05D004200 3.5e-182 641.7 384 77.9
Dinv02502 Davidia involucrata HOM05D003472 ORTHO05D004200 1.4e-178 629.8 384 76.8
CSS0044761 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 3.4e-177 625.2 383 76.5
Thecc.03G304700 Theobroma cacao HOM05D003472 ORTHO05D004200 3.4e-177 625.2 384 76.8
CSS0008297 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 5.8e-177 624.4 383 76.2
CSS0029461 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 6.4e-176 620.9 390 75.9
Sabra01G0063300 Salix brachista HOM05D003472 ORTHO05D004200 1.9e-175 619.4 384 75.5
Gohir.A02G096900 Gossypium hirsutum HOM05D003472 ORTHO05D004200 2.4e-175 619.0 384 74.7
Gorai.003G075200 Gossypium raimondii HOM05D003472 ORTHO05D004200 2.4e-175 619.0 384 74.7
Potri.001G087100 Populus trichocarpa HOM05D003472 ORTHO05D004200 4.2e-175 618.2 384 75.5
Potri.003G144000 Populus trichocarpa HOM05D003472 ORTHO05D004200 4.2e-175 618.2 384 75.8
Manes.01G053600 Manihot esculenta HOM05D003472 ORTHO05D004200 5.4e-175 617.8 384 75.3
Medtr8g099985 Medicago truncatula HOM05D003472 ORTHO05D004200 7.1e-175 617.5 383 74.2
Duzib205G0077 Durio zibethinus HOM05D003472 ORTHO05D004200 2.1e-174 615.9 384 75.8
Manes.02G005400 Manihot esculenta HOM05D003472 ORTHO05D004200 4.6e-174 614.8 384 75.8
Actinidia22188 Actinidia chinensis HOM05D003472 ORTHO05D004200 6.0e-174 614.4 384 74.5
Eucgr.E01027 Eucalyptus grandis HOM05D003472 ORTHO05D004200 6.0e-174 614.4 384 74.2
Glyma.05G219800 Glycine max HOM05D003472 ORTHO05D004200 1.3e-173 613.2 383 74.2
Dinv23367 Davidia involucrata HOM05D003472 ORTHO05D004200 5.1e-173 611.3 386 74.9
VMungo0251G0959 Vigna mungo HOM05D003472 ORTHO05D004200 2.5e-172 609.0 383 73.9
Gohir.D11G019200 Gossypium hirsutum HOM05D003472 ORTHO05D004200 3.3e-172 608.6 384 74.5
MBI12_g15036_MAGBIO Magnolia biondii HOM05D003472 ORTHO05D004200 3.3e-172 608.6 384 72.7
MD06G1113500 Malus domestica HOM05D003472 ORTHO05D004200 4.3e-172 608.2 384 74.2
Rhsim08G0015900 Rhododendron simsii HOM05D003472 ORTHO05D004200 5.6e-172 607.8 384 74.2
Gohir.A11G019500 Gossypium hirsutum HOM05D003472 ORTHO05D004200 1.3e-171 606.7 384 74.5
GSVIVG01019610001 Vitis vinifera HOM05D003472 ORTHO05D004200 3.6e-171 605.1 385 74.3
Ca_17451_v3 Cicer arietinum L. HOM05D003472 ORTHO05D004200 4.8e-171 604.7 383 73.6
Potri.003G143900 Populus trichocarpa HOM05D003472 ORTHO05D004200 6.2e-171 604.4 384 74.0
Phvul.002G301500 Phaseolus vulgaris HOM05D003472 ORTHO05D004200 8.1e-171 604.0 383 73.6
TPR.G3439 Trifolium pratense HOM05D003472 ORTHO05D004200 8.1e-171 604.0 383 72.3
Hma1.2p1_1835F.1_g304660 Hydrangea macrophylla HOM05D003472 ORTHO05D004200 1.1e-170 603.6 384 72.9
Ciclev10000621m.g Citrus clementina HOM05D003472 ORTHO05D004200 2.4e-170 602.4 384 73.7
Sabra03G0104400 Salix brachista HOM05D003472 ORTHO05D004200 5.3e-170 601.3 382 75.1
arahy.Tifrunner.gnm1.ann1.5YP9G9 Arachis hypogaea HOM05D003472 ORTHO05D004200 1.2e-169 600.1 383 72.1
Thecc.03G305100 Theobroma cacao HOM05D003472 ORTHO05D004200 1.2e-169 600.1 384 74.2
COL.COLO4_10760 Corchorus olitorius HOM05D003472 ORTHO05D004200 2.6e-169 599.0 384 73.2
arahy.Tifrunner.gnm1.ann1.69PAS2 Arachis hypogaea HOM05D003472 ORTHO05D004200 3.4e-169 598.6 383 71.8
TWI60G0599 Tripterygium wilfordii HOM05D003472 ORTHO05D004200 3.4e-169 598.6 384 74.7
Sabra03G0104300 Salix brachista HOM05D003472 ORTHO05D004200 5.8e-169 597.8 384 74.0
Gorai.007G020500 Gossypium raimondii HOM05D003472 ORTHO05D004200 9.9e-169 597.0 385 73.8
PSO170G3423 Papaver somniferum HOM05D003472 ORTHO05D004200 2.9e-168 595.5 383 72.8
vmacro22586 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 4.9e-168 594.7 413 69.5
Aqoxy5G04302 Aquilegia oxysepala HOM05D003472 ORTHO05D004200 2.4e-167 592.4 384 72.7
TWI60G0449 Tripterygium wilfordii HOM05D003472 ORTHO05D004200 3.2e-167 592.0 384 72.9
EL10Ac5g12473 Beta vulgaris HOM05D003472 ORTHO05D004200 2.1e-166 589.3 383 70.8
DCAR_010023 Daucus carota HOM05D003472 ORTHO05D004200 3.5e-166 588.6 384 71.4
Nn1g00321 Nelumbo nucifera HOM05D003472 ORTHO05D004200 4.6e-166 588.2 384 73.7
Cc08_g16500 Coffea canephora HOM05D003472 ORTHO05D004200 1.0e-165 587.0 384 70.8
vmacro11524 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 1.0e-165 587.0 384 71.1
Sc01g0010480 Simmondsia chinensis HOM05D003472 ORTHO05D004200 3.0e-165 585.5 384 70.6
CANSAT21G0971 Cannabis sativa HOM05D003472 ORTHO05D004200 5.1e-165 584.7 389 72.5
Aqoxy5G04304 Aquilegia oxysepala HOM05D003472 ORTHO05D004200 4.3e-164 581.6 384 71.4
CANSAT21G1016 Cannabis sativa HOM05D003472 ORTHO05D004200 9.6e-164 580.5 385 71.9
Hund11368 Selenicereus undatus HOM05D003472 ORTHO05D004200 1.3e-163 580.1 384 69.3
AUR62007025 Chenopodium quinoa HOM05D003472 ORTHO05D004200 3.6e-163 578.6 383 69.2
MELO3C005751.2 Cucumis melo HOM05D003472 ORTHO05D004200 4.8e-163 578.2 383 69.2
Sed0019208 Sechium edule HOM05D003472 ORTHO05D004200 3.1e-162 575.5 383 68.7
ECA246G2504 Erigeron canadensis HOM05D003472 ORTHO05D004200 4.0e-162 575.1 384 69.0
CsaV3_5G002020 Cucumis sativus L. HOM05D003472 ORTHO05D004200 5.3e-162 574.7 383 68.7
PGR042G1639 Punica granatum HOM05D003472 ORTHO05D004200 5.3e-162 574.7 408 66.7
PGR031G2218 Punica granatum HOM05D003472 ORTHO05D004200 9.0e-162 573.9 392 70.2
PGR031G0912 Punica granatum HOM05D003472 ORTHO05D004200 2.6e-161 572.4 381 71.4
PGR042G3552 Punica granatum HOM05D003472 ORTHO05D004200 3.4e-161 572.0 384 69.8
SalBow6G0547 Salvia bowleyana HOM05D003472 ORTHO05D004200 7.6e-161 570.9 383 70.5
Gohir.D03G086900 Gossypium hirsutum HOM05D003472 ORTHO05D004200 1.3e-160 570.1 383 70.2
CAN.G567.65 Capsicum annuum HOM05D003472 ORTHO05D004200 6.4e-160 567.8 384 67.2
Ciclev10033306m.g Citrus clementina HOM05D003472 ORTHO05D004200 3.2e-159 565.5 390 69.0
PGSC0003DMG400012252 Solanum tuberosum HOM05D003472 ORTHO05D004200 9.3e-159 563.9 385 67.5
Migut.I01165 Erythranthe guttata HOM05D003472 ORTHO05D004200 1.6e-158 563.1 384 69.8
CiPaw.11G115500 Carya illinoinensis HOM05D003472 ORTHO05D004200 1.0e-157 560.5 398 70.6
MSTRG.24856 Avicennia marina HOM05D003472 ORTHO05D004200 1.3e-157 560.1 384 69.0
Sopen08g031090 Solanum pennellii HOM05D003472 ORTHO05D004200 2.3e-157 559.3 385 66.8
Solyc08g082860.4 Solanum lycopersicum HOM05D003472 ORTHO05D004200 6.7e-157 557.8 385 66.8
ATR0757G010 Amborella trichopoda HOM05D003472 ORTHO05D004200 8.7e-157 557.4 383 67.4
MSTRG.24857 Avicennia marina HOM05D003472 ORTHO05D004200 1.9e-156 556.2 384 68.0
HanXRQChr06g0166301 Helianthus annuus HOM05D003472 ORTHO05D004200 1.9e-156 556.2 384 67.2
FAN04G2329 Fragaria x ananassa HOM05D003472 ORTHO05D004200 2.5e-156 555.8 397 70.0
Cpa.g.sc15.13 Carica papaya HOM05D003472 ORTHO05D004200 7.4e-156 554.3 385 70.1
Nitab4.5_0002439g0080 Nicotiana tabacum HOM05D003472 ORTHO05D004200 4.8e-155 551.6 384 66.9
THA.LOC104806447 Tarenaya hassleriana HOM05D003472 ORTHO05D004200 1.8e-154 549.7 378 66.7
Lsat_1_v5_gn_3_12621 Lactuca sativa HOM05D003472 ORTHO05D004200 5.3e-154 548.1 385 68.3
AL7G29240 Arabidopsis lyrata HOM05D003472 ORTHO05D004200 2.5e-151 539.3 381 65.6
Ciclev10023271m.g Citrus clementina HOM05D003472 ORTHO05D004200 2.5e-151 539.3 384 67.7
Carub.0007s1705 Capsella rubella HOM05D003472 ORTHO05D004200 5.5e-151 538.1 381 65.1
AT4G24040 Arabidopsis thaliana HOM05D003472 ORTHO05D004200 2.1e-150 536.2 381 65.1
CDE04G3265 Ceratophyllum demersum HOM05D003472 ORTHO05D004200 6.0e-150 534.6 382 62.8
BcaNung01109 Brassica carinata HOM05D003472 ORTHO05D004200 1.0e-149 533.9 381 63.8
Nitab4.5_0006889g0020 Nicotiana tabacum HOM05D003472 ORTHO05D004200 1.0e-149 533.9 384 64.1
BcaNung05698 Brassica carinata HOM05D003472 ORTHO05D004200 1.3e-149 533.5 381 64.8
Thecc.03G304400 Theobroma cacao HOM05D003472 ORTHO05D004200 6.7e-149 531.2 384 68.0
CARHR231440 Cardamine hirsuta HOM05D003472 ORTHO05D004200 1.1e-148 530.4 381 65.1
Ah.12g052970 Amaranthus hybridus HOM05D003472 ORTHO05D007906 5.7e-148 528.1 356 68.8
Thhalv10024684m.g Eutrema salsugineum HOM05D003472 ORTHO05D004200 5.7e-148 528.1 381 64.0
FAN18G4027 Fragaria x ananassa HOM05D003472 ORTHO05D004200 9.6e-148 527.3 419 64.2
Lalb_Chr05g0223881 Lupinus albus HOM05D003472 ORTHO05D004200 9.6e-148 527.3 342 69.9
BcaC09g50919 Brassica carinata HOM05D003472 ORTHO05D004200 2.8e-147 525.8 381 64.0
C01p19260 Brassica napus HOM05D003472 ORTHO05D004200 2.8e-147 525.8 381 64.0
A01p15310 Brassica napus HOM05D003472 ORTHO05D004200 3.7e-147 525.4 381 64.0
BraA01t01475Z Brassica rapa HOM05D003472 ORTHO05D004200 3.7e-147 525.4 381 64.0
Sp7g22010 Schrenkiella parvula HOM05D003472 ORTHO05D004200 3.7e-147 525.4 381 63.5
FAN13G1911 Fragaria x ananassa HOM05D003472 ORTHO05D004200 4.8e-147 525.0 419 64.0
HPP92_014452 Vanilla planifolia HOM05D003472 ORTHO05D004200 1.1e-146 523.9 389 62.2
BolC1t01851H Brassica oleracea HOM05D003472 ORTHO05D004200 6.9e-146 521.2 381 63.5
BolC7t45827H Brassica oleracea HOM05D003472 ORTHO05D004200 2.6e-145 519.2 381 63.3
Os10g0521000 Oryza sativa ssp. japonica HOM05D003472 ORTHO05D004200 4.5e-145 518.5 390 62.6
C07p53330 Brassica napus HOM05D003472 ORTHO05D004200 1.0e-144 517.3 381 63.0
CSS0021198 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 1.7e-144 516.5 416 64.7
A03p54940 Brassica napus HOM05D003472 ORTHO05D004200 2.2e-144 516.2 378 63.2
BraA03t14559Z Brassica rapa HOM05D003472 ORTHO05D004200 2.2e-144 516.2 378 63.2
BcaNung06470 Brassica carinata HOM05D003472 ORTHO05D004200 2.9e-144 515.8 381 63.0
FAN08G2572 Fragaria x ananassa HOM05D003472 ORTHO05D004200 6.5e-144 514.6 419 62.3
Rhsim08G0020400 Rhododendron simsii HOM05D003472 ORTHO05D004200 5.5e-143 511.5 391 66.0
Nitab4.5_0002439g0130 Nicotiana tabacum HOM05D003472 ORTHO05D004200 3.3e-140 502.3 352 66.2
unitig_747.g22055 Utricularia gibba HOM05D003472 ORTHO05D004200 7.4e-140 501.1 383 61.9
ClCG01G001880 Citrullus lanatus HOM05D003472 ORTHO05D004200 1.3e-139 500.4 345 67.8
vmacro13868 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 1.3e-139 500.4 385 64.2
Oeu009994.1 Olea europaea HOM05D003472 ORTHO05D004200 4.8e-139 498.4 457 55.1
vmacro09228 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 1.7e-136 490.0 313 73.5
Dinv06031 Davidia involucrata HOM05D003472 ORTHO05D004200 1.6e-134 483.4 290 77.2
CDE07G1940 Ceratophyllum demersum HOM05D003472 ORTHO05D004200 7.9e-134 481.1 349 61.9
Nitab4.5_0006889g0030 Nicotiana tabacum HOM05D003472 ORTHO05D004200 1.7e-131 473.4 385 59.5
SEGI_04080 Sequoiadendron giganteum HOM05D003472 ORTHO05D004200 4.8e-131 471.9 391 58.1
Rhsim07G0079700 Rhododendron simsii HOM05D003472 ORTHO05D004200 4.5e-129 465.3 385 60.8
SGA_v2.0_scaffold198G41058 Striga asiatica HOM05D003472 ORTHO05D004200 3.6e-126 455.7 357 61.6
Peaxi162Scf00074g00435 Petunia axillaris HOM05D003472 ORTHO05D004200 2.8e-123 446.0 385 56.6
Mapoly0014s0133 Marchantia polymorpha HOM05D003472 ORTHO05D004200 1.7e-120 436.8 396 51.3
unitig_1.g29358 Utricularia gibba HOM05D003472 ORTHO05D004200 1.0e-117 427.6 333 59.8
Pp3c23_11240 Physcomitrium patens HOM05D003472 ORTHO05D004200 2.6e-116 422.9 387 50.6
Rhsim02G0248900 Rhododendron simsii HOM05D003472 ORTHO05D004200 2.8e-115 419.5 342 61.4
Pp3c24_9748 Physcomitrium patens HOM05D003472 ORTHO05D004200 4.8e-115 418.7 385 50.6
Pp3c24_9750 Physcomitrium patens HOM05D003472 ORTHO05D004200 4.8e-115 418.7 385 50.6
SMO119G0122 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 7.0e-114 414.8 387 49.9
AagrBONN_evm.TU.Sc2ySwM_117.3367 Anthoceros agrestis HOM05D003472 ORTHO05D004200 2.7e-113 412.9 388 49.2
Oeu009993.1 Olea europaea HOM05D003472 ORTHO05D004200 8.8e-109 397.9 384 53.9
Pp3c16_7830 Physcomitrium patens HOM05D003472 ORTHO05D004200 8.8e-109 397.9 391 47.6
SMO165G0094 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 2.2e-107 393.3 394 48.5
SMO165G0115 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 9.1e-106 387.9 394 48.0
SMO272G0034 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 1.6e-105 387.1 394 48.0
Mapoly0055s0045 Marchantia polymorpha HOM05D003472 ORTHO05D004200 7.7e-105 384.8 379 49.6
Pp3c5_16470 Physcomitrium patens HOM05D003472 ORTHO05D004200 1.0e-104 384.4 391 46.0
Lj8C203G7 Lonicera japonica HOM05D003472 ORTHO05D004200 1.5e-103 380.6 385 51.9
Psat7g022760 Pisum sativum HOM05D003472 ORTHO05D004200 5.5e-103 378.6 251 68.1
Lj4g0019041 Lotus japonicus HOM05D003472 ORTHO05D004200 4.7e-102 375.6 251 68.9
SHI06939 Sapria himalayana HOM05D003472 ORTHO05D004200 4.0e-101 372.5 285 62.5
CAN.G567.64 Capsicum annuum HOM05D003472 ORTHO05D004200 3.4e-100 369.4 278 60.4
ClCG01G001870 Citrullus lanatus HOM05D003472 ORTHO05D004200 2.8e-99 366.3 403 50.6
CBR_g24063 Chara braunii HOM05D003472 ORTHO05D004200 5.6e-95 352.1 439 41.9
Zm00001eb021270 Zea mays HOM05D003472 ORTHO05D004200 9.5e-87 324.7 253 59.7
SEGI_01865 Sequoiadendron giganteum HOM05D003472 ORTHO05D004200 6.8e-77 292.0 240 55.8
MCO05G351 Micromonas commoda HOM05D003472 ORTHO05D004200 1.1e-71 274.6 427 35.4
MD14G1134600 Malus domestica HOM05D003472 ORTHO05D004200 2.0e-68 263.8 405 40.2
SEGI_13496 Sequoiadendron giganteum HOM05D003472 ORTHO05D004200 3.4e-68 263.1 240 52.1
PRCOL_00003576 Prasinoderma coloniale HOM05D003472 ORTHO05D004200 1.4e-66 257.7 402 37.8
Cre03.g195600 Chlamydomonas reinhardtii HOM05D003472 ORTHO05D004200 4.7e-62 242.7 475 33.5
C09p32980 Brassica napus HOM05D003472 ORTHO05D004200 2.6e-60 236.9 241 48.5
BcaC04g21340 Brassica carinata HOM05D003472 ORTHO05D004200 2.4e-58 230.3 243 46.9
Potri.006G068300 Populus trichocarpa HOM05D003472 ORTHO05D004200 6.0e-57 225.7 124 81.5
arahy.Tifrunner.gnm1.ann1.TJXZ67 Arachis hypogaea HOM05D003472 ORTHO05D004200 4.0e-53 213.0 214 51.4
Ca_29384_v3 Cicer arietinum L. HOM05D003472 ORTHO05D004200 6.9e-53 212.2 373 34.9
Thecc.03G304900 Theobroma cacao HOM05D003472 ORTHO05D004200 1.6e-49 201.1 191 56.5
BolC9t56133H Brassica oleracea HOM05D003472 ORTHO05D004200 2.1e-49 200.7 214 48.1
SEGI_06448 Sequoiadendron giganteum HOM05D003472 ORTHO05D004200 1.0e-48 198.4 143 62.2
PGR031G0091 Punica granatum HOM05D003472 ORTHO05D004200 3.4e-44 183.3 135 63.7
QL02p005551 Quercus lobata HOM05D000369 ORTHO05D004200 7.1e-42 175.6 106 84.0
Dinv06032 Davidia involucrata HOM05D003472 ORTHO05D004200 1.1e-31 141.7 83 80.7
Nn7g36715 Nelumbo nucifera HOM05D003472 ORTHO05D049298 1.1e-23 115.2 72 73.6
EL10Ac1g01459 Beta vulgaris HOM05D003472 ORTHO05D039007 1.5e-23 114.8 98 55.1
TPR.G36092 Trifolium pratense HOM05D003472 ORTHO05D004200 3.3e-23 113.6 55 87.3
SEGI_32363 Sequoiadendron giganteum HOM05D003472 ORTHO05D049298 6.9e-21 105.9 100 51.0
Cfa011954 Carpinus fangiana HOM05D003472 ORTHO05D016557 9.1e-21 105.5 81 66.7
RcHm_v2.0_Chr6g0261321 Rosa chinensis HOM05D003472 ORTHO05D039007 9.1e-21 105.5 62 75.8
QL04p070330 Quercus lobata HOM05D000064 ORTHO05D001902 5.3e-13 79.7 46 78.3
CAN.G715.3 Capsicum annuum HOM05D003472 ORTHO05D004200 4.2e-10 70.1 134 34.3


User provided reference genes

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