Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p028402 Quercus lobata HOM05D003472 ORTHO05D004200 5.5e-110 401.0 201 100.0
QL02p028401 Quercus lobata HOM05D003472 ORTHO05D004200 5.9e-88 327.8 182 85.7
QL02p028420 Quercus lobata HOM05D003472 ORTHO05D004200 3.2e-78 295.4 183 79.8
CiPaw.11G115400 Carya illinoinensis HOM05D003472 ORTHO05D004200 1.5e-75 286.6 183 76.5
Cfa011959 Carpinus fangiana HOM05D003472 ORTHO05D004200 4.1e-73 278.5 183 74.3
Haze_09134 Corylus avellana HOM05D003472 ORTHO05D004200 1.2e-72 276.9 183 73.2
CiPaw.12G079900 Carya illinoinensis HOM05D003472 ORTHO05D004200 3.8e-71 271.9 183 71.0
COL.COLO4_10760 Corchorus olitorius HOM05D003472 ORTHO05D004200 5.0e-71 271.6 183 69.9
Haze_09126 Corylus avellana HOM05D003472 ORTHO05D004200 5.0e-71 271.6 183 71.6
Duzib205G0077 Durio zibethinus HOM05D003472 ORTHO05D004200 1.9e-70 269.6 186 71.5
TAR629G3421 Trochodendron aralioides HOM05D003472 ORTHO05D004200 3.2e-70 268.9 183 68.9
Prupe.5G126300 Prunus persica HOM05D003472 ORTHO05D004200 1.0e-68 263.8 183 69.9
Dinv06032 Davidia involucrata HOM05D003472 ORTHO05D004200 1.4e-68 263.5 176 71.6
Thecc.03G304700 Theobroma cacao HOM05D003472 ORTHO05D004200 3.0e-68 262.3 180 69.4
Thecc.03G305100 Theobroma cacao HOM05D003472 ORTHO05D004200 1.5e-67 260.0 172 71.5
Thecc.03G304400 Theobroma cacao HOM05D003472 ORTHO05D004200 2.0e-67 259.6 172 71.5
TWI60G0449 Tripterygium wilfordii HOM05D003472 ORTHO05D004200 5.7e-67 258.1 183 65.6
RcHm_v2.0_Chr7g0186361 Rosa chinensis HOM05D003472 ORTHO05D004200 7.5e-67 257.7 181 69.6
MD06G1113500 Malus domestica HOM05D003472 ORTHO05D004200 9.8e-67 257.3 171 70.8
FAN04G2329 Fragaria x ananassa HOM05D003472 ORTHO05D004200 2.2e-66 256.1 173 69.9
Potri.003G143900 Populus trichocarpa HOM05D003472 ORTHO05D004200 2.2e-66 256.1 185 70.8
TWI60G0599 Tripterygium wilfordii HOM05D003472 ORTHO05D004200 3.7e-66 255.4 183 67.2
Cc08_g16500 Coffea canephora HOM05D003472 ORTHO05D004200 4.8e-66 255.0 183 65.6
FAN08G2572 Fragaria x ananassa HOM05D003472 ORTHO05D004200 6.3e-66 254.6 173 69.4
Lj8C203G7 Lonicera japonica HOM05D003472 ORTHO05D004200 6.3e-66 254.6 172 68.6
Potri.003G144000 Populus trichocarpa HOM05D003472 ORTHO05D004200 1.4e-65 253.4 185 69.7
Dinv02502 Davidia involucrata HOM05D003472 ORTHO05D004200 2.4e-65 252.7 170 71.2
Nn1g00321 Nelumbo nucifera HOM05D003472 ORTHO05D004200 2.4e-65 252.7 183 65.6
FvH4_5g11460 Fragaria vesca HOM05D003472 ORTHO05D004200 3.1e-65 252.3 173 68.2
Sc01g0010480 Simmondsia chinensis HOM05D003472 ORTHO05D004200 3.1e-65 252.3 180 66.1
Ciclev10000621m.g Citrus clementina HOM05D003472 ORTHO05D004200 5.4e-65 251.5 170 70.6
Gorai.003G075200 Gossypium raimondii HOM05D003472 ORTHO05D004200 5.4e-65 251.5 185 68.1
Potri.001G087100 Populus trichocarpa HOM05D003472 ORTHO05D004200 7.0e-65 251.1 183 69.9
Oeu009994.1 Olea europaea HOM05D003472 ORTHO05D004200 9.1e-65 250.8 174 68.4
Sabra03G0104300 Salix brachista HOM05D003472 ORTHO05D004200 2.0e-64 249.6 185 69.2
Migut.I01165 Erythranthe guttata HOM05D003472 ORTHO05D004200 2.7e-64 249.2 178 65.2
Gohir.D03G086900 Gossypium hirsutum HOM05D003472 ORTHO05D004200 2.7e-64 249.2 185 68.1
Manes.01G053600 Manihot esculenta HOM05D003472 ORTHO05D004200 3.5e-64 248.8 170 67.1
Sabra03G0104400 Salix brachista HOM05D003472 ORTHO05D004200 5.9e-64 248.1 184 67.9
FAN13G1911 Fragaria x ananassa HOM05D003472 ORTHO05D004200 7.7e-64 247.7 173 68.2
FAN18G4027 Fragaria x ananassa HOM05D003472 ORTHO05D004200 7.7e-64 247.7 173 67.1
Oeu009991.1 Olea europaea HOM05D003472 ORTHO05D004200 7.7e-64 247.7 170 68.2
Gorai.007G020500 Gossypium raimondii HOM05D003472 ORTHO05D004200 1.0e-63 247.3 172 68.0
Hma1.2p1_1835F.1_g304660 Hydrangea macrophylla HOM05D003472 ORTHO05D004200 1.3e-63 246.9 181 64.6
Gohir.A11G019500 Gossypium hirsutum HOM05D003472 ORTHO05D004200 2.3e-63 246.1 170 68.2
Gohir.D11G019200 Gossypium hirsutum HOM05D003472 ORTHO05D004200 2.3e-63 246.1 172 68.0
Manes.02G005400 Manihot esculenta HOM05D003472 ORTHO05D004200 5.0e-63 245.0 172 68.0
Ciclev10033306m.g Citrus clementina HOM05D003472 ORTHO05D004200 1.5e-62 243.4 170 67.6
CSS0008297 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 1.9e-62 243.0 171 68.4
CSS0044761 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 1.9e-62 243.0 171 68.4
Gohir.A02G096900 Gossypium hirsutum HOM05D003472 ORTHO05D004200 2.5e-62 242.7 185 65.9
Rhsim08G0015900 Rhododendron simsii HOM05D003472 ORTHO05D004200 3.3e-62 242.3 174 66.1
CSS0032814 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 4.2e-62 241.9 178 66.3
MBI12_g15036_MAGBIO Magnolia biondii HOM05D003472 ORTHO05D004200 7.2e-62 241.1 170 67.6
Lsat_1_v5_gn_3_12621 Lactuca sativa HOM05D003472 ORTHO05D004200 2.8e-61 239.2 179 62.6
AUR62007025 Chenopodium quinoa HOM05D003472 ORTHO05D004200 3.6e-61 238.8 174 62.6
DCAR_010023 Daucus carota HOM05D003472 ORTHO05D004200 4.7e-61 238.4 181 60.8
EL10Ac5g12473 Beta vulgaris HOM05D003472 ORTHO05D004200 6.1e-61 238.0 175 63.4
CANSAT21G1016 Cannabis sativa HOM05D003472 ORTHO05D004200 8.0e-61 237.7 183 61.7
Ah.12g052970 Amaranthus hybridus HOM05D003472 ORTHO05D007906 1.8e-60 236.5 183 59.6
Peaxi162Scf00074g00435 Petunia axillaris HOM05D003472 ORTHO05D004200 2.3e-60 236.1 178 62.9
vmacro09227 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 3.0e-60 235.7 170 65.3
ClCG01G001880 Citrullus lanatus HOM05D003472 ORTHO05D004200 4.0e-60 235.3 171 64.3
Sabra01G0063300 Salix brachista HOM05D003472 ORTHO05D004200 4.0e-60 235.3 168 70.8
Actinidia22188 Actinidia chinensis HOM05D003472 ORTHO05D004200 6.8e-60 234.6 176 63.1
Sopen08g031090 Solanum pennellii HOM05D003472 ORTHO05D004200 6.8e-60 234.6 174 64.4
arahy.Tifrunner.gnm1.ann1.69PAS2 Arachis hypogaea HOM05D003472 ORTHO05D004200 1.2e-59 233.8 167 67.1
Glyma.05G219800 Glycine max HOM05D003472 ORTHO05D004200 1.2e-59 233.8 166 66.3
Nitab4.5_0006889g0020 Nicotiana tabacum HOM05D003472 ORTHO05D004200 1.5e-59 233.4 174 64.9
Nitab4.5_0002439g0080 Nicotiana tabacum HOM05D003472 ORTHO05D004200 2.0e-59 233.0 174 63.8
Nitab4.5_0006889g0030 Nicotiana tabacum HOM05D003472 ORTHO05D004200 2.0e-59 233.0 174 63.2
arahy.Tifrunner.gnm1.ann1.5YP9G9 Arachis hypogaea HOM05D003472 ORTHO05D004200 2.6e-59 232.6 167 67.1
CANSAT21G0971 Cannabis sativa HOM05D003472 ORTHO05D004200 4.4e-59 231.9 173 66.5
Psat7g022760 Pisum sativum HOM05D003472 ORTHO05D004200 4.4e-59 231.9 173 64.7
MSTRG.24856 Avicennia marina HOM05D003472 ORTHO05D004200 5.7e-59 231.5 174 62.6
Solyc08g082860.4 Solanum lycopersicum HOM05D003472 ORTHO05D004200 5.7e-59 231.5 174 63.8
CAN.G567.65 Capsicum annuum HOM05D003472 ORTHO05D004200 7.5e-59 231.1 178 61.8
vmacro11524 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 9.8e-59 230.7 174 63.8
Ca_17451_v3 Cicer arietinum L. HOM05D003472 ORTHO05D004200 1.3e-58 230.3 165 66.7
Sed0019208 Sechium edule HOM05D003472 ORTHO05D004200 2.2e-58 229.6 171 63.7
Medtr8g099985 Medicago truncatula HOM05D003472 ORTHO05D004200 2.8e-58 229.2 183 60.1
MELO3C005751.2 Cucumis melo HOM05D003472 ORTHO05D004200 4.1e-57 225.3 171 60.8
TPR.G3439 Trifolium pratense HOM05D003472 ORTHO05D004200 4.1e-57 225.3 174 63.2
PGR042G1639 Punica granatum HOM05D003472 ORTHO05D004200 5.4e-57 224.9 173 61.8
MSTRG.24857 Avicennia marina HOM05D003472 ORTHO05D004200 7.0e-57 224.6 174 61.5
CsaV3_5G002020 Cucumis sativus L. HOM05D003472 ORTHO05D004200 7.0e-57 224.6 171 60.2
SalBow6G0547 Salvia bowleyana HOM05D003472 ORTHO05D004200 7.0e-57 224.6 182 58.2
Hund11368 Selenicereus undatus HOM05D003472 ORTHO05D004200 1.6e-56 223.4 176 60.8
Phvul.002G301500 Phaseolus vulgaris HOM05D003472 ORTHO05D004200 2.7e-56 222.6 166 61.4
ECA246G2504 Erigeron canadensis HOM05D003472 ORTHO05D004200 1.3e-55 220.3 174 59.2
Rhsim07G0079700 Rhododendron simsii HOM05D003472 ORTHO05D004200 1.7e-55 219.9 177 58.8
VMungo0251G0959 Vigna mungo HOM05D003472 ORTHO05D004200 2.3e-55 219.5 178 58.4
THA.LOC104806447 Tarenaya hassleriana HOM05D003472 ORTHO05D004200 3.8e-55 218.8 177 62.7
HPP92_014452 Vanilla planifolia HOM05D003472 ORTHO05D004200 6.6e-55 218.0 183 55.7
CiPaw.11G115500 Carya illinoinensis HOM05D003472 ORTHO05D004200 1.9e-54 216.5 132 78.0
PGR031G2218 Punica granatum HOM05D003472 ORTHO05D004200 4.3e-54 215.3 177 59.3
Lalb_Chr05g0223891 Lupinus albus HOM05D003472 ORTHO05D004200 5.6e-54 214.9 165 61.8
vmacro13868 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 5.6e-54 214.9 171 60.2
TPR.G40004 Trifolium pratense HOM05D003472 ORTHO05D004200 9.5e-54 214.2 166 61.4
Eucgr.E01027 Eucalyptus grandis HOM05D003472 ORTHO05D004200 2.8e-53 212.6 165 60.6
ATR0757G010 Amborella trichopoda HOM05D003472 ORTHO05D004200 3.6e-53 212.2 178 57.9
CDE04G3265 Ceratophyllum demersum HOM05D003472 ORTHO05D004200 6.1e-53 211.5 184 56.0
Thhalv10024684m.g Eutrema salsugineum HOM05D003472 ORTHO05D004200 6.1e-53 211.5 177 61.0
Ciclev10023271m.g Citrus clementina HOM05D003472 ORTHO05D004200 8.0e-53 211.1 154 65.6
Aqoxy5G04302 Aquilegia oxysepala HOM05D003472 ORTHO05D004200 1.0e-52 210.7 163 62.0
Lj4g0019041 Lotus japonicus HOM05D003472 ORTHO05D004200 8.9e-52 207.6 168 58.3
vmacro22586 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 2.0e-51 206.5 172 57.6
CARHR231440 Cardamine hirsuta HOM05D003472 ORTHO05D004200 4.4e-51 205.3 176 58.5
Nitab4.5_0002439g0130 Nicotiana tabacum HOM05D003472 ORTHO05D004200 4.4e-51 205.3 158 62.7
SGA_v2.0_scaffold198G41058 Striga asiatica HOM05D003472 ORTHO05D004200 2.2e-50 203.0 183 55.7
Sp7g22010 Schrenkiella parvula HOM05D003472 ORTHO05D004200 2.9e-50 202.6 175 58.9
Aa31LG6G7240 Aethionema arabicum HOM05D003472 ORTHO05D004200 6.4e-50 201.4 181 57.5
Aqoxy5G04304 Aquilegia oxysepala HOM05D003472 ORTHO05D004200 8.3e-50 201.1 174 56.3
BolC1t01851H Brassica oleracea HOM05D003472 ORTHO05D004200 1.4e-49 200.3 174 59.2
AT4G24040 Arabidopsis thaliana HOM05D003472 ORTHO05D004200 3.2e-49 199.1 174 57.5
BcaC09g50919 Brassica carinata HOM05D003472 ORTHO05D004200 4.1e-49 198.7 174 58.6
C01p19260 Brassica napus HOM05D003472 ORTHO05D004200 4.1e-49 198.7 174 58.6
A01p15310 Brassica napus HOM05D003472 ORTHO05D004200 1.6e-48 196.8 172 58.7
BraA01t01475Z Brassica rapa HOM05D003472 ORTHO05D004200 1.6e-48 196.8 172 58.7
BcaNung01109 Brassica carinata HOM05D003472 ORTHO05D004200 4.6e-48 195.3 172 58.7
GSVIVG01019610001 Vitis vinifera HOM05D003472 ORTHO05D004200 6.0e-48 194.9 183 55.7
AL7G29240 Arabidopsis lyrata HOM05D003472 ORTHO05D004200 1.0e-47 194.1 178 54.5
Carub.0007s1705 Capsella rubella HOM05D003472 ORTHO05D004200 1.0e-47 194.1 177 55.9
SHI06941 Sapria himalayana HOM05D003472 ORTHO05D004200 1.0e-47 194.1 164 57.3
PGR042G3552 Punica granatum HOM05D003472 ORTHO05D004200 8.6e-47 191.0 167 55.7
PGR031G0912 Punica granatum HOM05D003472 ORTHO05D004200 1.5e-46 190.3 177 56.5
unitig_747.g22055 Utricularia gibba HOM05D003472 ORTHO05D004200 4.3e-46 188.7 175 54.9
A03p54940 Brassica napus HOM05D003472 ORTHO05D004200 8.9e-44 181.0 175 54.9
BraA03t14559Z Brassica rapa HOM05D003472 ORTHO05D004200 8.9e-44 181.0 175 54.9
BcaNung05698 Brassica carinata HOM05D003472 ORTHO05D004200 1.5e-43 180.3 175 54.9
BcaNung06470 Brassica carinata HOM05D003472 ORTHO05D004200 1.5e-43 180.3 175 54.9
C07p53330 Brassica napus HOM05D003472 ORTHO05D004200 1.5e-43 180.3 175 54.9
BolC7t45827H Brassica oleracea HOM05D003472 ORTHO05D004200 1.5e-43 180.3 175 54.9
Cpa.g.sc15.13 Carica papaya HOM05D003472 ORTHO05D004200 2.4e-41 172.9 114 71.1
Mapoly0055s0045 Marchantia polymorpha HOM05D003472 ORTHO05D004200 2.3e-39 166.4 162 49.4
Os10g0521000 Oryza sativa ssp. japonica HOM05D003472 ORTHO05D004200 1.1e-38 164.1 169 50.3
Zm00001eb021270 Zea mays HOM05D003472 ORTHO05D004200 1.9e-38 163.3 176 48.3
unitig_1.g29357 Utricularia gibba HOM05D003472 ORTHO05D004200 4.3e-38 162.2 146 54.8
AagrBONN_evm.TU.Sc2ySwM_117.3367 Anthoceros agrestis HOM05D003472 ORTHO05D004200 5.6e-38 161.8 162 50.6
Pp3c5_16470 Physcomitrium patens HOM05D003472 ORTHO05D004200 1.6e-37 160.2 161 47.8
SMO165G0094 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 6.2e-37 158.3 165 47.3
Pp3c16_7830 Physcomitrium patens HOM05D003472 ORTHO05D004200 6.8e-36 154.8 186 43.0
SMO119G0122 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 1.2e-35 154.1 162 45.7
Pp3c23_11240 Physcomitrium patens HOM05D003472 ORTHO05D004200 2.0e-35 153.3 162 48.1
arahy.Tifrunner.gnm1.ann1.TJXZ67 Arachis hypogaea HOM05D003472 ORTHO05D004200 4.4e-35 152.1 177 46.3
Pp3c24_9748 Physcomitrium patens HOM05D003472 ORTHO05D004200 1.7e-34 150.2 162 46.3
Pp3c24_9750 Physcomitrium patens HOM05D003472 ORTHO05D004200 1.7e-34 150.2 162 46.3
SMO272G0034 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 2.9e-34 149.4 180 43.9
ClCG01G001870 Citrullus lanatus HOM05D003472 ORTHO05D004200 1.4e-33 147.1 165 46.1
SEGI_04080 Sequoiadendron giganteum HOM05D003472 ORTHO05D004200 3.2e-33 146.0 160 46.9
SMO165G0115 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 4.1e-33 145.6 196 42.3
HanXRQChr06g0166301 Helianthus annuus HOM05D003472 ORTHO05D004200 3.9e-31 139.0 93 66.7
Mapoly0014s0133 Marchantia polymorpha HOM05D003472 ORTHO05D004200 1.9e-30 136.7 165 44.2
PSO170G3423 Papaver somniferum HOM05D003472 ORTHO05D004200 3.3e-30 136.0 90 68.9
CBR_g24063 Chara braunii HOM05D003472 ORTHO05D004200 9.5e-30 134.4 140 46.4
CDE07G1940 Ceratophyllum demersum HOM05D003472 ORTHO05D004200 1.3e-26 124.0 90 63.3
Lj8C203T14 Lonicera japonica HOM05D003472 ORTHO05D004200 2.9e-26 122.9 89 62.9
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 3.2e-25 119.4 123 56.1
Dinv02499 Davidia involucrata HOM05D003472 ORTHO05D004200 1.2e-21 107.5 84 64.3
Cre03.g195600 Chlamydomonas reinhardtii HOM05D003472 ORTHO05D004200 1.5e-19 100.5 170 36.5
PRCOL_00003576 Prasinoderma coloniale HOM05D003472 ORTHO05D004200 9.0e-12 74.7 152 31.6
MCO05G351 Micromonas commoda HOM05D003472 ORTHO05D004200 8.4e-10 68.2 119 35.3


User provided reference genes

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