Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p024705 Quercus lobata HOM05D003463 ORTHO05D004206 6.4e-210 733.8 362 100.0
QL08p034245 Quercus lobata HOM05D003463 ORTHO05D004206 8.7e-90 334.7 616 39.8
CiPaw.03G164300 Carya illinoinensis HOM05D003463 ORTHO05D004206 1.4e-84 317.4 586 39.8
Cfa014461 Carpinus fangiana HOM05D003463 ORTHO05D004206 9.6e-81 304.7 621 37.2
CiPaw.04G119100 Carya illinoinensis HOM05D003463 ORTHO05D004206 1.6e-80 303.9 612 37.4
RcHm_v2.0_Chr2g0160501 Rosa chinensis HOM05D003463 ORTHO05D004206 3.7e-80 302.8 450 43.8
Atru.chr6.3118 Acer truncatum HOM05D003463 ORTHO05D004206 4.0e-79 299.3 450 43.6
Manes.13G074400 Manihot esculenta HOM05D003463 ORTHO05D004206 7.6e-78 295.0 450 44.0
TWI36G1584 Tripterygium wilfordii HOM05D003463 ORTHO05D004206 1.3e-77 294.3 448 43.8
Ciclev10014009m.g Citrus clementina HOM05D003463 ORTHO05D004206 8.4e-77 291.6 450 44.0
Haze_12964 Corylus avellana HOM05D003463 ORTHO05D004206 1.1e-76 291.2 660 35.3
Potri.007G119300 Populus trichocarpa HOM05D003463 ORTHO05D004206 1.1e-76 291.2 450 42.9
MD09G1103200 Malus domestica HOM05D003463 ORTHO05D004206 1.9e-76 290.4 451 42.6
Gohir.A03G162950 Gossypium hirsutum HOM05D003463 ORTHO05D004206 3.2e-76 289.7 621 35.9
Gorai.005G208600 Gossypium raimondii HOM05D003463 ORTHO05D004206 3.2e-76 289.7 621 35.9
Prupe.3G222600 Prunus persica HOM05D003463 ORTHO05D004206 5.5e-76 288.9 622 35.9
Thecc.02G164300 Theobroma cacao HOM05D003463 ORTHO05D004206 7.1e-76 288.5 621 35.6
MELO3C018791.2 Cucumis melo HOM05D003463 ORTHO05D004206 9.3e-76 288.1 450 42.0
CsaV3_7G003880 Cucumis sativus L. HOM05D003463 ORTHO05D004206 1.2e-75 287.7 450 42.0
Duzib052G0139 Durio zibethinus HOM05D003463 ORTHO05D004206 1.2e-75 287.7 450 42.4
Sed0018482 Sechium edule HOM05D003463 ORTHO05D004206 1.6e-75 287.3 422 42.4
Sed0025509 Sechium edule HOM05D003463 ORTHO05D004206 2.1e-75 287.0 450 41.8
Glyma.13G305000 Glycine max HOM05D003463 ORTHO05D004206 4.6e-75 285.8 450 43.1
Gohir.D02G186400 Gossypium hirsutum HOM05D003463 ORTHO05D004206 4.6e-75 285.8 450 42.7
TAR629G1280 Trochodendron aralioides HOM05D003463 ORTHO05D004206 4.6e-75 285.8 450 42.0
GSVIVG01030649001 Vitis vinifera HOM05D003463 ORTHO05D004206 4.6e-75 285.8 444 42.3
Psat7g193080 Pisum sativum HOM05D003463 ORTHO05D004206 7.9e-75 285.0 422 43.8
FAN09G4547 Fragaria x ananassa HOM05D003463 ORTHO05D004206 1.8e-74 283.9 450 41.1
Aa31LG8G8660 Aethionema arabicum HOM05D003463 ORTHO05D004206 2.3e-74 283.5 450 42.4
Potri.017G041100 Populus trichocarpa HOM05D003463 ORTHO05D004206 2.3e-74 283.5 450 42.4
PGR042G2093 Punica granatum HOM05D003463 ORTHO05D004206 2.3e-74 283.5 450 42.4
Ca_20672_v3 Cicer arietinum L. HOM05D003463 ORTHO05D004206 3.0e-74 283.1 450 42.2
COL.COLO4_13026 Corchorus olitorius HOM05D003463 ORTHO05D004206 3.0e-74 283.1 621 35.4
MD17G1091000 Malus domestica HOM05D003463 ORTHO05D004206 3.9e-74 282.7 422 42.9
CANSAT64G0087 Cannabis sativa HOM05D003463 ORTHO05D004206 5.1e-74 282.3 449 42.3
Glyma.12G196800 Glycine max HOM05D003463 ORTHO05D004206 6.7e-74 282.0 450 42.4
Phvul.005G112000 Phaseolus vulgaris HOM05D003463 ORTHO05D004206 1.1e-73 281.2 450 42.7
TWI18G0507 Tripterygium wilfordii HOM05D003463 ORTHO05D004206 1.5e-73 280.8 449 42.5
FvH4_6g43760 Fragaria vesca HOM05D003463 ORTHO05D004206 2.5e-73 280.0 450 40.7
Lj3g0021154 Lotus japonicus HOM05D003463 ORTHO05D004206 2.5e-73 280.0 450 41.6
TPR.G19054 Trifolium pratense HOM05D003463 ORTHO05D004206 3.3e-73 279.6 450 42.0
Lalb_Chr14g0375591 Lupinus albus HOM05D003463 ORTHO05D004206 5.6e-73 278.9 450 42.2
Eucgr.A01739 Eucalyptus grandis HOM05D003463 ORTHO05D004206 9.6e-73 278.1 449 41.9
TAR627G0487 Trochodendron aralioides HOM05D003463 ORTHO05D004206 9.6e-73 278.1 450 41.3
Duzib248G0717 Durio zibethinus HOM05D003463 ORTHO05D004206 1.3e-72 277.7 540 36.7
Medtr4g045743 Medicago truncatula HOM05D003463 ORTHO05D004206 1.3e-72 277.7 422 42.9
VMungo1080G1634 Vigna mungo HOM05D003463 ORTHO05D004206 1.3e-72 277.7 450 42.4
Glyma.12G102400 Glycine max HOM05D003463 ORTHO05D004206 1.6e-72 277.3 450 42.2
Lj1C753T3 Lonicera japonica HOM05D003463 ORTHO05D004206 2.1e-72 276.9 464 41.2
Thhalv10024183m.g Eutrema salsugineum HOM05D003463 ORTHO05D004206 6.2e-72 275.4 450 41.3
FAN02G4525 Fragaria x ananassa HOM05D003463 ORTHO05D004206 6.2e-72 275.4 460 40.0
Glyma.06G301900 Glycine max HOM05D003463 ORTHO05D004206 6.2e-72 275.4 450 41.6
FAN14G1979 Fragaria x ananassa HOM05D003463 ORTHO05D004206 8.2e-72 275.0 460 39.8
Dinv18548 Davidia involucrata HOM05D003463 ORTHO05D004206 1.1e-71 274.6 461 41.6
unitig_8.g4614 Utricularia gibba HOM05D003463 ORTHO05D004206 1.8e-71 273.9 392 43.9
Lj3g0003812 Lotus japonicus HOM05D003463 ORTHO05D004206 2.4e-71 273.5 450 41.6
FAN05G2372 Fragaria x ananassa HOM05D003463 ORTHO05D004206 3.1e-71 273.1 450 40.9
THA.LOC104808502 Tarenaya hassleriana HOM05D003463 ORTHO05D004206 3.1e-71 273.1 444 41.7
TPR.G30794 Trifolium pratense HOM05D003463 ORTHO05D004206 4.0e-71 272.7 450 41.8
Ah.01g005040 Amaranthus hybridus HOM05D003463 ORTHO05D004206 6.9e-71 271.9 413 41.6
Peaxi162Scf00007g01417 Petunia axillaris HOM05D003463 ORTHO05D004206 9.0e-71 271.6 450 40.9
BcaB02g07835 Brassica carinata HOM05D003463 ORTHO05D004206 2.0e-70 270.4 450 41.3
Dinv10901 Davidia involucrata HOM05D003463 ORTHO05D004206 2.0e-70 270.4 450 41.6
AT4G15180 Arabidopsis thaliana HOM05D003463 ORTHO05D004206 2.6e-70 270.0 490 39.2
BcaC08g44245 Brassica carinata HOM05D003463 ORTHO05D004206 2.6e-70 270.0 450 41.3
C06p16490 Brassica napus HOM05D003463 ORTHO05D004206 2.6e-70 270.0 450 41.3
BolC6t36852H Brassica oleracea HOM05D003463 ORTHO05D004206 2.6e-70 270.0 450 41.3
Cc05_g05330 Coffea canephora HOM05D003463 ORTHO05D004206 2.6e-70 270.0 450 40.7
Ca_01564_v3 Cicer arietinum L. HOM05D003463 ORTHO05D004206 3.4e-70 269.6 465 41.3
Psat0s3330g0040 Pisum sativum HOM05D003463 ORTHO05D004206 3.4e-70 269.6 465 40.9
A05p17060 Brassica napus HOM05D003463 ORTHO05D004206 5.8e-70 268.9 450 41.1
BraA05t20607Z Brassica rapa HOM05D003463 ORTHO05D004206 5.8e-70 268.9 450 41.1
Medtr2g089080 Medicago truncatula HOM05D003463 ORTHO05D004206 5.8e-70 268.9 450 40.7
Nitab4.5_0001134g0130 Nicotiana tabacum HOM05D003463 ORTHO05D004206 7.6e-70 268.5 422 41.7
CARHR221910 Cardamine hirsuta HOM05D003463 ORTHO05D004206 1.0e-69 268.1 450 40.4
AL7G40500 Arabidopsis lyrata HOM05D003463 ORTHO05D004206 2.2e-69 266.9 450 40.4
CAN.G86.25 Capsicum annuum HOM05D003463 ORTHO05D004206 2.2e-69 266.9 450 40.7
Nn1g03744 Nelumbo nucifera HOM05D003463 ORTHO05D004206 2.2e-69 266.9 465 40.2
Sp7g13400 Schrenkiella parvula HOM05D003463 ORTHO05D004206 2.2e-69 266.9 450 40.4
SHI10282 Sapria himalayana HOM05D003463 ORTHO05D004206 2.9e-69 266.5 407 41.8
Sopen07g026490 Solanum pennellii HOM05D003463 ORTHO05D004206 2.9e-69 266.5 450 40.2
Nitab4.5_0003429g0030 Nicotiana tabacum HOM05D003463 ORTHO05D004206 3.8e-69 266.2 436 40.6
Solyc07g052940.4 Solanum lycopersicum HOM05D003463 ORTHO05D004206 3.8e-69 266.2 450 40.0
Lalb_Chr19g0135651 Lupinus albus HOM05D003463 ORTHO05D004206 4.9e-69 265.8 460 42.0
BcaC09g50202 Brassica carinata HOM05D003463 ORTHO05D004206 1.1e-68 264.6 450 40.2
BcaNung00300 Brassica carinata HOM05D003463 ORTHO05D004206 1.1e-68 264.6 450 40.0
A01p22340 Brassica napus HOM05D003463 ORTHO05D004206 1.1e-68 264.6 450 40.2
C01p27890 Brassica napus HOM05D003463 ORTHO05D004206 1.1e-68 264.6 450 40.2
BolC1t02722H Brassica oleracea HOM05D003463 ORTHO05D004206 1.1e-68 264.6 450 40.2
BraA01t02149Z Brassica rapa HOM05D003463 ORTHO05D004206 1.1e-68 264.6 450 40.2
PSO541G5151 Papaver somniferum HOM05D003463 ORTHO05D004206 1.4e-68 264.2 452 38.7
Oeu011067.1 Olea europaea HOM05D003463 ORTHO05D004206 1.9e-68 263.8 450 39.8
Sabra17G0027900 Salix brachista HOM05D003463 ORTHO05D004206 1.9e-68 263.8 512 37.3
SalBow7G2865 Salvia bowleyana HOM05D003463 ORTHO05D004206 1.9e-68 263.8 450 40.0
PSO675G4322 Papaver somniferum HOM05D003463 ORTHO05D004206 3.2e-68 263.1 452 38.7
Rhsim06G0155700 Rhododendron simsii HOM05D003463 ORTHO05D004206 4.2e-68 262.7 450 39.6
Migut.M00384 Erythranthe guttata HOM05D003463 ORTHO05D004206 1.2e-67 261.2 444 39.6
SGA_v2.0_scaffold34G13880 Striga asiatica HOM05D003463 ORTHO05D004206 2.7e-67 260.0 458 39.1
ECA233G2663 Erigeron canadensis HOM05D003463 ORTHO05D004206 3.5e-67 259.6 422 40.3
Hund08062 Selenicereus undatus HOM05D003463 ORTHO05D004206 4.6e-67 259.2 444 38.7
Nn1g06924 Nelumbo nucifera HOM05D003463 ORTHO05D004206 6.0e-67 258.8 465 39.8
HanXRQChr17g0563751 Helianthus annuus HOM05D003463 ORTHO05D004206 7.9e-67 258.5 422 40.8
Lsat_1_v5_gn_8_129901 Lactuca sativa HOM05D003463 ORTHO05D004206 8.7e-66 255.0 422 40.0
DCAR_021199 Daucus carota HOM05D003463 ORTHO05D004206 2.5e-65 253.4 440 39.5
Cpa.g.sc8.254 Carica papaya HOM05D003463 ORTHO05D004206 3.3e-65 253.1 493 37.5
vmacro12241 Vaccinium macrocarpon HOM05D003463 ORTHO05D004206 3.3e-65 253.1 359 43.2
EL10Ac9g22340 Beta vulgaris HOM05D003463 ORTHO05D004206 2.2e-64 250.4 450 36.9
Sc21g0001820 Simmondsia chinensis HOM05D003463 ORTHO05D004206 2.2e-64 250.4 450 38.2
ATR0804G005 Amborella trichopoda HOM05D003463 ORTHO05D004206 3.7e-64 249.6 453 38.6
QL04p077387 Quercus lobata HOM05D003463 ORTHO05D004206 6.9e-63 245.4 271 54.2
CDE11G1115 Ceratophyllum demersum HOM05D003463 ORTHO05D004206 1.1e-60 238.0 450 38.2
Aqoxy4G01913 Aquilegia oxysepala HOM05D003463 ORTHO05D004206 7.9e-59 231.9 452 37.2
DCAR_009696 Daucus carota HOM05D003463 ORTHO05D004206 1.1e-57 228.0 433 38.1
CDE05G3394 Ceratophyllum demersum HOM05D003463 ORTHO05D004206 2.4e-55 220.3 430 38.4
Zm00001eb413080 Zea mays HOM05D003463 ORTHO05D004206 1.6e-51 207.6 461 33.6
Oeu035823.1 Olea europaea HOM05D003463 ORTHO05D004206 1.8e-50 204.1 175 62.9
Zm00001eb171790 Zea mays HOM05D003463 ORTHO05D004206 1.8e-50 204.1 461 33.0
Actinidia12489 Actinidia chinensis HOM05D003463 ORTHO05D004206 2.8e-48 196.8 175 62.3
Eucgr.E02490 Eucalyptus grandis HOM05D003463 ORTHO05D004206 5.0e-45 186.0 393 35.4
HPP92_004145 Vanilla planifolia HOM05D003463 ORTHO05D004206 3.6e-43 179.9 157 59.9
Pp3c11_18840 Physcomitrium patens HOM05D003463 ORTHO05D004206 2.0e-38 164.1 448 29.5
CSS0031394 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 1.1e-36 158.3 168 54.8
Pp3c7_5920 Physcomitrium patens HOM05D003463 ORTHO05D004206 4.2e-36 156.4 446 29.1
Pp3c7_5929 Physcomitrium patens HOM05D003463 ORTHO05D004206 4.2e-36 156.4 446 29.1
SEGI_02831 Sequoiadendron giganteum HOM05D003463 ORTHO05D004206 9.4e-36 155.2 448 29.5
SMO365G0046 Selaginella moellendorffii HOM05D003463 ORTHO05D004206 6.1e-35 152.5 422 29.1
SMO135G0001 Selaginella moellendorffii HOM05D003463 ORTHO05D004206 1.8e-31 141.0 366 30.6
Mapoly0021s0105 Marchantia polymorpha HOM05D003463 ORTHO05D004206 3.1e-31 140.2 422 27.3
Hma1.2p1_2477F.1_g322850 Hydrangea macrophylla HOM05D003463 ORTHO05D004206 8.8e-26 122.1 241 39.4
Hma1.2p1_1378F.1_g279185 Hydrangea macrophylla HOM05D003463 ORTHO05D004206 5.7e-25 119.4 202 41.6
AagrBONN_evm.TU.Sc2ySwM_117.2770 Anthoceros agrestis HOM05D003463 ORTHO05D004206 1.7e-24 117.9 186 41.9
ClCG02G001610 Citrullus lanatus HOM05D003463 ORTHO05D004206 7.0e-23 112.5 147 46.3
Os08g0180100 Oryza sativa ssp. japonica HOM05D003463 ORTHO05D004206 3.3e-20 103.6 233 33.9
CBR_g54148 Chara braunii HOM05D003463 ORTHO05D004206 4.2e-20 103.2 444 25.2
Medtr5g037343 Medicago truncatula HOM05D003463 ORTHO05D004206 3.8e-13 80.1 124 43.5
Nn7g36849 Nelumbo nucifera HOM05D003463 ORTHO05D004206 8.6e-13 79.0 145 38.6
RcHm_v2.0_Chr2g0131041 Rosa chinensis HOM05D003463 ORTHO05D004206 4.0e-10 70.1 109 40.4
CSS0019318 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 1.5e-09 68.2 124 38.7
DCAR_017230 Daucus carota HOM05D003463 ORTHO05D004206 4.9e-08 63.2 67 41.8


User provided reference genes

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