Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p013034 Quercus lobata HOM05D004078 ORTHO05D004823 2.0e-239 832.0 414 100.0
Cfa014016 Carpinus fangiana HOM05D004078 ORTHO05D004823 1.9e-210 735.7 412 85.4
Haze_22719 Corylus avellana HOM05D004078 ORTHO05D004823 2.1e-209 732.3 412 85.2
CiPaw.07G143000 Carya illinoinensis HOM05D004078 ORTHO05D004823 3.0e-203 711.8 415 82.9
Rhsim06G0011500 Rhododendron simsii HOM05D004078 ORTHO05D004823 1.1e-192 676.8 412 76.7
Manes.18G008900 Manihot esculenta HOM05D004078 ORTHO05D004823 1.4e-192 676.4 412 78.4
TAR376G0337 Trochodendron aralioides HOM05D004078 ORTHO05D004823 3.1e-192 675.2 412 77.9
Duzib116G0649 Durio zibethinus HOM05D004078 ORTHO05D004823 2.0e-191 672.5 414 77.8
TAR628G1171 Trochodendron aralioides HOM05D004078 ORTHO05D004823 3.2e-189 665.2 412 76.7
Dinv31900 Davidia involucrata HOM05D004078 ORTHO05D004823 9.3e-189 663.7 412 77.4
Thecc.08G052700 Theobroma cacao HOM05D004078 ORTHO05D004823 1.2e-188 663.3 414 77.3
Duzib093G0900 Durio zibethinus HOM05D004078 ORTHO05D004823 4.6e-188 661.4 414 76.8
Potri.005G246300 Populus trichocarpa HOM05D004078 ORTHO05D004823 1.3e-187 659.8 416 75.2
Aqoxy6G01920 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 2.3e-187 659.1 412 74.5
Sabra05G0190400 Salix brachista HOM05D004078 ORTHO05D004823 5.1e-187 657.9 416 75.0
CSS0030403 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 2.5e-186 655.6 411 76.2
COL.COLO4_26076 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.3e-185 653.3 410 76.3
Nn5g30856 Nelumbo nucifera HOM05D004078 ORTHO05D004823 4.8e-185 651.4 413 74.6
Atru.chr13.207 Acer truncatum HOM05D004078 ORTHO05D004823 1.7e-182 642.9 416 72.1
MBI05_g32275_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 1.6e-177 626.3 413 72.2
Hma1.2p1_0023F.1_g015860 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 8.2e-177 624.0 411 74.0
CANSAT25G3530 Cannabis sativa HOM05D004078 ORTHO05D004823 4.1e-176 621.7 420 71.9
MBI09_g17152_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 7.9e-172 607.4 413 69.0
TWI12G0461 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 2.4e-168 595.9 411 70.3
ATR0661G241 Amborella trichopoda HOM05D004078 ORTHO05D004823 4.5e-167 591.7 413 68.0
Hma1.2p1_0028F.1_g017320 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 1.1e-165 587.0 413 70.5
Actinidia16270 Actinidia chinensis HOM05D004078 ORTHO05D004823 9.4e-165 583.9 410 69.3
Dinv31901 Davidia involucrata HOM05D004078 ORTHO05D004823 4.7e-164 581.6 412 68.7
Thecc.08G052600 Theobroma cacao HOM05D004078 ORTHO05D004823 1.8e-163 579.7 414 69.3
Potri.002G015800 Populus trichocarpa HOM05D004078 ORTHO05D004823 3.9e-163 578.6 379 72.0
Hma1.2p1_0023F.1_g015830 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 5.1e-163 578.2 411 69.6
MELO3C011335.2 Cucumis melo HOM05D004078 ORTHO05D004823 1.7e-161 573.2 410 66.3
PSO675G8915 Papaver somniferum HOM05D004078 ORTHO05D004823 9.1e-160 567.4 416 66.1
ClCG08G013990 Citrullus lanatus HOM05D004078 ORTHO05D004823 1.2e-159 567.0 407 66.1
TWI56G1016 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 2.6e-159 565.8 412 68.0
PSO541G4079 Papaver somniferum HOM05D004078 ORTHO05D004823 1.3e-158 563.5 414 65.9
PGSC0003DMG400009959 Solanum tuberosum HOM05D004078 ORTHO05D004823 3.8e-158 562.0 393 67.9
Sed0013676 Sechium edule HOM05D004078 ORTHO05D004823 1.6e-156 556.6 399 65.4
CAN.G311.82 Capsicum annuum HOM05D004078 ORTHO05D004823 3.6e-156 555.4 405 66.2
Sopen04g035680 Solanum pennellii HOM05D004078 ORTHO05D004823 4.7e-156 555.1 396 66.7
Solyc04g082030.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 6.1e-156 554.7 396 66.7
Actinidia17020 Actinidia chinensis HOM05D004078 ORTHO05D004823 3.0e-155 552.4 413 65.9
Lalb_Chr08g0246321 Lupinus albus HOM05D004078 ORTHO05D004823 3.0e-155 552.4 409 64.8
Peaxi162Scf00174g00105 Petunia axillaris HOM05D004078 ORTHO05D004823 1.5e-154 550.1 395 66.8
SEGI_37656 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 4.4e-154 548.5 404 64.9
SEGI_03953 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 1.3e-153 547.0 400 65.0
Atru.chr13.206 Acer truncatum HOM05D004078 ORTHO05D004823 1.6e-151 540.0 410 63.7
Lalb_Chr23g0265921 Lupinus albus HOM05D004078 ORTHO05D004823 1.0e-150 537.3 411 62.8
TWI56G0120 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 1.0e-150 537.3 415 65.3
TWI56G0218 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 1.0e-150 537.3 415 65.3
Glyma.06G020300 Glycine max HOM05D004078 ORTHO05D004823 5.0e-150 535.0 415 63.1
Aqoxy5G01089 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 8.5e-150 534.3 412 63.6
Glyma.04G020200 Glycine max HOM05D004078 ORTHO05D004823 8.5e-150 534.3 415 62.9
PSO423G0267 Papaver somniferum HOM05D004078 ORTHO05D004823 4.2e-149 531.9 414 62.1
VMungo1309G0831 Vigna mungo HOM05D004078 ORTHO05D004823 4.2e-149 531.9 408 62.7
Nn5g27926 Nelumbo nucifera HOM05D004078 ORTHO05D004823 3.6e-148 528.9 412 62.9
TAR091G0003 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.2e-146 523.9 322 77.6
Nn5g27925 Nelumbo nucifera HOM05D004078 ORTHO05D004823 4.4e-146 521.9 414 61.8
Phvul.009G020400 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 4.4e-146 521.9 407 61.9
Phvul.009G020500 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 1.3e-145 520.4 407 60.4
Duzib177G0502 Durio zibethinus HOM05D004078 ORTHO05D004823 2.2e-145 519.6 405 63.5
arahy.Tifrunner.gnm1.ann1.GGEE3T Arachis hypogaea HOM05D004078 ORTHO05D004823 6.3e-145 518.1 390 64.1
Nitab4.5_0003280g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 9.1e-144 514.2 370 66.8
Thecc.05G287800 Theobroma cacao HOM05D004078 ORTHO05D004823 1.3e-142 510.4 404 63.1
TPR.G38148 Trifolium pratense HOM05D004078 ORTHO05D004823 5.0e-142 508.4 410 60.7
Duzib177G0280 Durio zibethinus HOM05D004078 ORTHO05D004823 6.5e-142 508.1 392 62.8
Medtr3g114870 Medicago truncatula HOM05D004078 ORTHO05D004823 2.1e-140 503.1 411 59.1
Sed0015343 Sechium edule HOM05D004078 ORTHO05D004823 2.1e-140 503.1 411 59.9
TPR.G38230 Trifolium pratense HOM05D004078 ORTHO05D004823 1.0e-139 500.7 409 59.2
Aqoxy2G02302 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 3.7e-137 492.3 376 61.7
Gorai.007G284300 Gossypium raimondii HOM05D004078 ORTHO05D004823 4.9e-137 491.9 410 59.3
Gohir.A11G254600 Gossypium hirsutum HOM05D004078 ORTHO05D004823 1.8e-136 490.0 410 59.5
Gohir.D11G264300 Gossypium hirsutum HOM05D004078 ORTHO05D004823 4.1e-136 488.8 393 60.3
Aqoxy2G02303 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 7.0e-136 488.0 376 61.7
CsaV3_2G024480 Cucumis sativus L. HOM05D004078 ORTHO05D004823 4.5e-135 485.3 333 69.1
Lj1g0007451 Lotus japonicus HOM05D004078 ORTHO05D004823 1.0e-134 484.2 413 57.6
Psat0s1018g0040 Pisum sativum HOM05D004078 ORTHO05D004823 2.5e-133 479.6 412 58.0
COL.COLO4_15291 Corchorus olitorius HOM05D004078 ORTHO05D004823 4.3e-133 478.8 401 61.1
Gorai.007G284400 Gossypium raimondii HOM05D004078 ORTHO05D004823 2.1e-132 476.5 388 60.8
Gohir.A11G254700 Gossypium hirsutum HOM05D004078 ORTHO05D004823 4.7e-132 475.3 388 60.8
TPR.G27977 Trifolium pratense HOM05D004078 ORTHO05D004823 1.0e-131 474.2 412 57.3
COL.COLO4_15293 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.4e-131 473.8 396 61.6
Zm00001eb319850 Zea mays HOM05D004078 ORTHO05D004823 3.0e-131 472.6 413 56.7
Ciclev10031824m.g Citrus clementina HOM05D004078 ORTHO05D004823 5.2e-131 471.9 384 63.0
TPR.G30061 Trifolium pratense HOM05D004078 ORTHO05D004823 1.5e-130 470.3 412 56.3
Ciclev10020253m.g Citrus clementina HOM05D004078 ORTHO05D004823 1.3e-129 467.2 407 59.5
COL.COLO4_15294 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.7e-129 466.8 389 61.7
Ca_15452_v3 Cicer arietinum L. HOM05D004078 ORTHO05D004823 8.3e-129 464.5 353 62.3
Aqoxy5G01091 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.1e-128 464.2 413 56.2
Os09g0543400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 7.0e-128 461.5 411 56.4
FvH4_4g24730 Fragaria vesca HOM05D004078 ORTHO05D004823 4.6e-127 458.8 410 60.7
RcHm_v2.0_Chr3g0485831 Rosa chinensis HOM05D004078 ORTHO05D004823 5.9e-127 458.4 399 60.7
RcHm_v2.0_Chr4g0431831 Rosa chinensis HOM05D004078 ORTHO05D004823 5.9e-127 458.4 394 61.4
FvH4_4g27890 Fragaria vesca HOM05D004078 ORTHO05D004823 1.3e-126 457.2 408 60.0
FAN12G4190 Fragaria x ananassa HOM05D004078 ORTHO05D004823 5.0e-126 455.3 408 59.8
FvH4_4g24750 Fragaria vesca HOM05D004078 ORTHO05D004823 1.5e-125 453.8 421 58.0
RcHm_v2.0_Chr3g0485811 Rosa chinensis HOM05D004078 ORTHO05D004823 4.3e-125 452.2 390 61.3
RcHm_v2.0_Chr3g0485901 Rosa chinensis HOM05D004078 ORTHO05D004823 4.3e-125 452.2 418 58.4
FvH4_4g24751 Fragaria vesca HOM05D004078 ORTHO05D004823 7.3e-125 451.4 405 60.7
FAN07G1093 Fragaria x ananassa HOM05D004078 ORTHO05D004823 7.3e-125 451.4 423 58.2
Rhsim06G0011400 Rhododendron simsii HOM05D004078 ORTHO05D004823 7.3e-125 451.4 410 57.8
FAN12G0110 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.2e-124 450.7 405 60.7
FAN17G0799 Fragaria x ananassa HOM05D004078 ORTHO05D004823 8.0e-124 448.0 406 59.9
Nitab4.5_0001270g0090 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.0e-123 447.6 393 57.8
MSTRG.1142 Avicennia marina HOM05D004078 ORTHO05D004823 1.2e-122 444.1 351 64.7
CSS0003326 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 4.4e-122 442.2 413 54.7
Zm00001eb331690 Zea mays HOM05D004078 ORTHO05D004823 4.4e-122 442.2 419 53.5
CSS0037182 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 5.8e-122 441.8 391 57.0
MD05G1034000 Malus domestica HOM05D004078 ORTHO05D004823 1.7e-121 440.3 412 53.6
Prupe.8G044900 Prunus persica HOM05D004078 ORTHO05D004823 2.9e-121 439.5 413 53.3
FAN12G2492 Fragaria x ananassa HOM05D004078 ORTHO05D004823 5.6e-117 425.2 405 56.8
Thecc.06G067400 Theobroma cacao HOM05D004078 ORTHO05D004823 5.6e-117 425.2 316 67.1
CAN.G637.4 Capsicum annuum HOM05D004078 ORTHO05D004823 1.6e-116 423.7 401 53.4
Manes.13G003000 Manihot esculenta HOM05D004078 ORTHO05D004823 1.8e-115 420.2 417 50.8
Nitab4.5_0005973g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 6.4e-113 411.8 394 53.0
Peaxi162Scf00171g10044 Petunia axillaris HOM05D004078 ORTHO05D004823 8.3e-113 411.4 389 53.0
TPR.G27976 Trifolium pratense HOM05D004078 ORTHO05D004823 1.9e-112 410.2 412 51.0
Nitab4.5_0001180g0140 Nicotiana tabacum HOM05D004078 ORTHO05D004823 4.1e-112 409.1 394 52.8
Sopen03g029060 Solanum pennellii HOM05D004078 ORTHO05D004823 5.4e-112 408.7 395 52.2
Solyc03g098300.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 7.1e-112 408.3 394 50.8
Sopen03g029040 Solanum pennellii HOM05D004078 ORTHO05D004823 9.2e-112 407.9 394 50.8
Sopen03g029020 Solanum pennellii HOM05D004078 ORTHO05D004823 2.1e-111 406.8 394 50.5
Sopen03g029050 Solanum pennellii HOM05D004078 ORTHO05D004823 2.1e-111 406.8 394 50.5
Prupe.8G048200 Prunus persica HOM05D004078 ORTHO05D004823 4.6e-111 405.6 358 55.0
Solyc03g098310.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 1.0e-110 404.4 395 51.6
Sopen03g029030 Solanum pennellii HOM05D004078 ORTHO05D004823 1.5e-109 400.6 380 51.1
Medtr3g114890 Medicago truncatula HOM05D004078 ORTHO05D004823 4.3e-109 399.1 400 53.0
RcHm_v2.0_Chr7g0227121 Rosa chinensis HOM05D004078 ORTHO05D004823 1.6e-108 397.1 406 55.7
Gohir.D11G264400 Gossypium hirsutum HOM05D004078 ORTHO05D004823 4.7e-108 395.6 334 59.0
Zm00001eb114090 Zea mays HOM05D004078 ORTHO05D004823 5.2e-107 392.1 417 48.7
MBI18_g05694_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 6.8e-107 391.7 404 47.3
TAR627G0362 Trochodendron aralioides HOM05D004078 ORTHO05D004823 2.0e-106 390.2 401 47.6
Thecc.05G287700 Theobroma cacao HOM05D004078 ORTHO05D004823 5.1e-102 375.6 292 63.4
CSS0015589 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 4.0e-99 365.9 409 46.9
AagrBONN_evm.TU.Sc2ySwM_340.331 Anthoceros agrestis HOM05D004078 ORTHO05D004823 3.4e-98 362.8 375 49.3
Mapoly0001s0543 Marchantia polymorpha HOM05D004078 ORTHO05D000931 2.2e-97 360.1 377 49.1
MD05G1036600 Malus domestica HOM05D004078 ORTHO05D004823 2.4e-96 356.7 409 46.9
SMO171G0020 Selaginella moellendorffii HOM05D004078 ORTHO05D004823 2.4e-96 356.7 376 48.9
Peaxi162Scf00479g00072 Petunia axillaris HOM05D004078 ORTHO05D004823 2.1e-95 353.6 393 46.8
CAN.G637.1 Capsicum annuum HOM05D004078 ORTHO05D004823 1.7e-94 350.5 400 46.0
MCO05G310 Micromonas commoda HOM05D004078 ORTHO05D004823 2.3e-94 350.1 403 44.2
TAR627G0085 Trochodendron aralioides HOM05D004078 ORTHO05D004823 5.6e-93 345.5 372 45.7
PRCOL_00001954 Prasinoderma coloniale HOM05D004078 ORTHO05D004823 7.1e-88 328.6 366 47.5
GSVIVG01015447001 Vitis vinifera HOM05D004078 ORTHO05D004823 1.6e-84 317.4 408 44.1
PGSC0003DMG400031047 Solanum tuberosum HOM05D004078 ORTHO05D004823 8.1e-84 315.1 421 42.0
CDE02G0789 Ceratophyllum demersum HOM05D004078 ORTHO05D004823 2.4e-83 313.5 289 55.4
Cre16.g683371 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 2.4e-83 313.5 381 45.1
Nn7g37243 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.5e-82 310.8 277 58.8
Cre03.g159500 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 1.3e-76 291.2 388 42.5
Sopen03g029010 Solanum pennellii HOM05D004078 ORTHO05D004823 3.2e-72 276.6 293 46.1
Cfa026818 Carpinus fangiana HOM05D004078 ORTHO05D004823 7.9e-71 271.9 400 38.5
COL.COLO4_24641 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.0e-70 271.6 295 51.9
Prupe.8G047700 Prunus persica HOM05D004078 ORTHO05D004823 1.4e-64 251.1 288 45.5
ClCG08G013980 Citrullus lanatus HOM05D004078 ORTHO05D150179 1.5e-61 241.1 358 40.2
CAN.G20.32 Capsicum annuum HOM05D004078 ORTHO05D004823 2.4e-59 233.8 181 59.1
Os02g0482400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 3.8e-57 226.5 231 50.2
PGSC0003DMG400025628 Solanum tuberosum HOM05D004078 ORTHO05D004823 2.3e-54 217.2 241 49.0
QL02p013060 Quercus lobata HOM05D004078 ORTHO05D004823 4.1e-51 206.5 127 79.5
Nn7g37247 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.1e-48 198.4 173 59.5
RcHm_v2.0_Chr3g0490331 Rosa chinensis HOM05D004078 ORTHO05D004823 6.1e-47 192.6 138 68.8
Hma1.2p1_0023F.1_g015870 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 1.3e-44 184.9 203 49.8
RcHm_v2.0_Chr3g0490321 Rosa chinensis HOM05D004078 ORTHO05D004823 3.7e-44 183.3 189 54.0
GSVIVG01015446001 Vitis vinifera HOM05D004078 ORTHO05D004823 8.2e-44 182.2 177 54.2
GSVIVG01008730001 Vitis vinifera HOM05D004078 ORTHO05D004823 3.8e-41 173.3 307 36.2
Prupe.8G048000 Prunus persica HOM05D004078 ORTHO05D004823 5.2e-38 162.9 137 57.7
RcHm_v2.0_Chr3g0485801 Rosa chinensis HOM05D004078 ORTHO05D004823 8.8e-38 162.2 350 35.1
PGSC0003DMG400024452 Solanum tuberosum HOM05D004078 ORTHO05D004823 1.2e-37 161.8 307 35.2
AagrBONN_evm.TU.Sc2ySwM_340.327 Anthoceros agrestis HOM05D004078 ORTHO05D004823 5.0e-33 146.4 151 49.0
TPR.G7712 Trifolium pratense HOM05D004078 ORTHO05D004823 1.2e-31 141.7 113 57.5
Sabra02G0012600 Salix brachista HOM05D004078 ORTHO05D004823 2.0e-21 107.8 62 79.0
Aqoxy6G01662 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 9.8e-21 105.5 72 66.7
Cre01.g050100 Chlamydomonas reinhardtii HOM05D003708 ORTHO05D004452 6.1e-15 86.3 378 23.8
Mapoly0005s0182 Marchantia polymorpha HOM05D003708 ORTHO05D004452 1.8e-14 84.7 397 24.4
FAN12G3541 Fragaria x ananassa HOM05D004078 ORTHO05D004823 3.0e-09 67.4 270 25.9
Cre16.g675900 Chlamydomonas reinhardtii HOM05D003708 ORTHO05D145447 4.0e-06 57.0 103 32.0
CBR_g46280 Chara braunii HOM05D003708 ORTHO05D004452 8.9e-06 55.8 217 26.7


User provided reference genes

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