Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p011816 Quercus lobata HOM05D006975 ORTHO05D008736 2.2e-186 655.6 352 100.0
CiPaw.08G066800 Carya illinoinensis HOM05D006975 ORTHO05D008736 1.4e-92 344.0 355 58.9
Haze_04763 Corylus avellana HOM05D006975 ORTHO05D008736 1.1e-84 317.8 356 55.3
Cfa006087 Carpinus fangiana HOM05D006975 ORTHO05D008736 8.4e-82 308.1 359 54.0
Dinv39526 Davidia involucrata HOM05D006975 ORTHO05D008736 1.8e-71 273.9 358 49.7
Potri.005G240800 Populus trichocarpa HOM05D006975 ORTHO05D008736 2.5e-70 270.0 355 45.6
CANSAT25G0709 Cannabis sativa HOM05D006975 ORTHO05D008736 2.4e-68 263.5 355 47.6
Sabra05G0186300 Salix brachista HOM05D006975 ORTHO05D008736 4.1e-68 262.7 355 45.4
GSVIVG01009926001 Vitis vinifera HOM05D006975 ORTHO05D008736 4.1e-68 262.7 355 47.6
CSS0040454 Camellia sinensis var. sinensis HOM05D006975 ORTHO05D008736 6.9e-68 261.9 341 49.0
CSS0026180 Camellia sinensis var. sinensis HOM05D006975 ORTHO05D008736 2.6e-67 260.0 338 49.4
Cpa.g.sc26.57 Carica papaya HOM05D006975 ORTHO05D008736 1.0e-66 258.1 359 46.0
Duzib093G1023 Durio zibethinus HOM05D006975 ORTHO05D008736 2.9e-66 256.5 360 46.4
TAR536G0001 Trochodendron aralioides HOM05D006975 ORTHO05D008736 8.5e-66 255.0 354 46.3
Manes.05G146300 Manihot esculenta HOM05D006975 ORTHO05D008736 1.2e-64 251.1 359 45.7
TWI12G0084 Tripterygium wilfordii HOM05D006975 ORTHO05D008736 2.3e-63 246.9 356 45.5
MD08G1012000 Malus domestica HOM05D006975 ORTHO05D008736 3.9e-63 246.1 348 46.8
Cc10_g01570 Coffea canephora HOM05D006975 ORTHO05D008736 2.0e-62 243.8 359 44.8
COL.COLO4_26134 Corchorus olitorius HOM05D006975 ORTHO05D008736 2.0e-62 243.8 359 45.1
Atru.chr13.277_Atru.chr13.278 Acer truncatum HOM05D006975 ORTHO05D008736 1.1e-60 238.0 356 46.6
Gohir.D01G097400 Gossypium hirsutum HOM05D006975 ORTHO05D008736 2.4e-60 236.9 362 45.0
ClCG05G018220 Citrullus lanatus HOM05D006975 ORTHO05D008736 4.1e-60 236.1 356 44.7
Gorai.002G123100 Gossypium raimondii HOM05D006975 ORTHO05D008736 4.1e-60 236.1 362 44.8
Gohir.A01G110800 Gossypium hirsutum HOM05D006975 ORTHO05D008736 5.3e-60 235.7 362 45.0
Nn1g05932 Nelumbo nucifera HOM05D006975 ORTHO05D008736 1.2e-59 234.6 307 47.2
Rhsim06G0020700 Rhododendron simsii HOM05D006975 ORTHO05D008736 2.6e-59 233.4 395 42.8
Thecc.08G046000 Theobroma cacao HOM05D006975 ORTHO05D008736 3.5e-59 233.0 254 55.5
Prupe.1G364300 Prunus persica HOM05D006975 ORTHO05D008736 4.5e-59 232.6 361 45.2
Actinidia15428 Actinidia chinensis HOM05D006975 ORTHO05D008736 5.0e-58 229.2 202 63.4
PGR031G2234 Punica granatum HOM05D006975 ORTHO05D008736 5.0e-58 229.2 370 44.3
MELO3C003746.2 Cucumis melo HOM05D006975 ORTHO05D008736 8.5e-58 228.4 358 42.5
CsaV3_3G045930 Cucumis sativus L. HOM05D006975 ORTHO05D008736 8.5e-58 228.4 358 42.2
Solyc04g081540.3 Solanum lycopersicum HOM05D006975 ORTHO05D008736 1.5e-57 227.6 357 42.0
Oeu027521.1 Olea europaea HOM05D006975 ORTHO05D008736 2.5e-57 226.9 366 43.7
Phvul.007G020200 Phaseolus vulgaris HOM05D006975 ORTHO05D008736 2.5e-57 226.9 357 42.9
Sopen04g035150 Solanum pennellii HOM05D006975 ORTHO05D008736 2.5e-57 226.9 357 41.7
Sed0023128 Sechium edule HOM05D006975 ORTHO05D008736 2.7e-56 223.4 332 45.2
PGSC0003DMG401009870 Solanum tuberosum HOM05D006975 ORTHO05D008736 3.6e-56 223.0 357 43.1
Lj4A797T59 Lonicera japonica HOM05D006975 ORTHO05D008736 1.4e-55 221.1 359 42.9
MSTRG.1185 Avicennia marina HOM05D006975 ORTHO05D008736 1.8e-55 220.7 359 44.8
BolC1t01871H Brassica oleracea HOM05D006975 ORTHO05D008736 4.0e-55 219.5 361 41.6
C01p19420 Brassica napus HOM05D006975 ORTHO05D008736 1.1e-54 218.0 361 41.3
THA.LOC104798667 Tarenaya hassleriana HOM05D006975 ORTHO05D008736 1.5e-54 217.6 277 48.4
Lj5g0003318 Lotus japonicus HOM05D006975 ORTHO05D008736 5.7e-54 215.7 359 42.1
Lalb_Chr02g0143331 Lupinus albus HOM05D006975 ORTHO05D008736 5.7e-54 215.7 367 41.7
RcHm_v2.0_Chr6g0303031 Rosa chinensis HOM05D006975 ORTHO05D008736 5.7e-54 215.7 356 43.3
BcaC09g50900 Brassica carinata HOM05D006975 ORTHO05D008736 9.7e-54 214.9 363 40.5
Hma1.2p1_0023F.1_g015550 Hydrangea macrophylla HOM05D006975 ORTHO05D008736 9.7e-54 214.9 298 49.0
FvH4_2g38330 Fragaria vesca HOM05D006975 ORTHO05D008736 2.2e-53 213.8 353 42.8
AL7G29110 Arabidopsis lyrata HOM05D006975 ORTHO05D008736 4.8e-53 212.6 361 41.0
arahy.Tifrunner.gnm1.ann1.Z9XT7U Arachis hypogaea HOM05D006975 ORTHO05D008736 6.3e-53 212.2 304 44.7
VMungo0720G0770 Vigna mungo HOM05D006975 ORTHO05D008736 6.3e-53 212.2 357 44.0
Nitab4.5_0008000g0010 Nicotiana tabacum HOM05D006975 ORTHO05D008736 1.4e-52 211.1 360 40.8
Aqoxy6G02228 Aquilegia oxysepala HOM05D006975 ORTHO05D008736 1.8e-52 210.7 268 51.9
Hund05184 Selenicereus undatus HOM05D006975 ORTHO05D008736 1.8e-52 210.7 316 44.3
FAN20G0256 Fragaria x ananassa HOM05D006975 ORTHO05D008736 2.4e-52 210.3 360 42.5
BraA01t01489Z Brassica rapa HOM05D006975 ORTHO05D008736 3.1e-52 209.9 359 39.8
TPR.G2436 Trifolium pratense HOM05D006975 ORTHO05D008736 1.2e-51 208.0 352 43.2
Ca_11200_v3 Cicer arietinum L. HOM05D006975 ORTHO05D008736 2.7e-51 206.8 359 41.5
DCAR_021031 Daucus carota HOM05D006975 ORTHO05D008736 2.7e-51 206.8 307 43.0
MBI05_g19267_MAGBIO Magnolia biondii HOM05D006975 ORTHO05D008736 2.7e-51 206.8 359 41.5
PSO675G8288 Papaver somniferum HOM05D006975 ORTHO05D008736 2.7e-51 206.8 306 44.1
BcaNung01123 Brassica carinata HOM05D006975 ORTHO05D008736 4.5e-51 206.1 265 46.0
ECA232G2413 Erigeron canadensis HOM05D006975 ORTHO05D008736 7.7e-51 205.3 322 42.2
Os04g0250700 Oryza sativa ssp. japonica HOM05D006975 ORTHO05D008736 7.7e-51 205.3 324 44.4
CARHR231580 Cardamine hirsuta HOM05D006975 ORTHO05D008736 1.3e-50 204.5 360 40.6
HanXRQChr05g0145201 Helianthus annuus HOM05D006975 ORTHO05D008736 1.7e-50 204.1 360 41.9
EL10Ac1g02185 Beta vulgaris HOM05D006975 ORTHO05D008736 3.8e-50 203.0 331 41.1
Thhalv10025797m.g Eutrema salsugineum HOM05D006975 ORTHO05D008736 6.5e-50 202.2 263 46.4
Psat6g231560 Pisum sativum HOM05D006975 ORTHO05D008736 1.1e-49 201.4 357 41.5
Migut.C00848 Erythranthe guttata HOM05D006975 ORTHO05D008736 2.5e-49 200.3 360 41.1
Medtr1g112320 Medicago truncatula HOM05D006975 ORTHO05D008736 2.5e-49 200.3 352 41.8
FAN15G2275 Fragaria x ananassa HOM05D006975 ORTHO05D008736 3.2e-49 199.9 360 41.1
Sp7g22140 Schrenkiella parvula HOM05D006975 ORTHO05D008736 3.2e-49 199.9 358 39.9
CDE04G0963 Ceratophyllum demersum HOM05D006975 ORTHO05D008736 9.4e-49 198.4 331 41.4
Ciclev10001912m.g Citrus clementina HOM05D006975 ORTHO05D008736 3.6e-48 196.4 363 41.9
PSO541G1271 Papaver somniferum HOM05D006975 ORTHO05D008736 3.6e-48 196.4 307 43.0
Sed0014296 Sechium edule HOM05D006975 ORTHO05D008736 4.7e-48 196.1 360 38.3
A01p15500 Brassica napus HOM05D006975 ORTHO05D008736 8.0e-48 195.3 386 37.0
AT4G24175 Arabidopsis thaliana HOM05D006975 ORTHO05D008736 2.3e-47 193.7 358 39.4
SGA_v2.0_scaffold11G05927 Striga asiatica HOM05D006975 ORTHO05D008736 8.8e-47 191.8 375 39.7
Aa31sc424G20 Aethionema arabicum HOM05D006975 ORTHO05D008736 1.5e-46 191.0 369 38.8
Glyma.20G108900 Glycine max HOM05D006975 ORTHO05D008736 2.6e-46 190.3 357 40.9
AUR62035015 Chenopodium quinoa HOM05D006975 ORTHO05D008736 5.7e-46 189.1 353 41.1
Atru.chr13.275 Acer truncatum HOM05D006975 ORTHO05D008736 7.5e-46 188.7 326 42.9
Zm00001eb086730 Zea mays HOM05D006975 ORTHO05D008736 3.7e-45 186.4 327 43.1
CAN.G311.39 Capsicum annuum HOM05D006975 ORTHO05D008736 2.4e-44 183.7 410 36.6
Carub.0007s1692 Capsella rubella HOM05D006975 ORTHO05D008736 5.4e-44 182.6 367 38.4
Lsat_1_v5_gn_0_34641 Lactuca sativa HOM05D006975 ORTHO05D008736 2.7e-43 180.3 220 50.5
HPP92_004984 Vanilla planifolia HOM05D006975 ORTHO05D008736 1.7e-42 177.6 229 47.6
Eucgr.H00993 Eucalyptus grandis HOM05D006975 ORTHO05D008736 8.5e-42 175.3 248 46.8
Peaxi162Scf00553g00101 Petunia axillaris HOM05D006975 ORTHO05D008736 1.5e-38 164.5 249 41.8
unitig_748.g7725 Utricularia gibba HOM05D006975 ORTHO05D008736 1.5e-38 164.5 236 49.2
Hma1.2p1_0023F.1_g015540 Hydrangea macrophylla HOM05D006975 ORTHO05D008736 2.0e-38 164.1 345 38.3
arahy.Tifrunner.gnm1.ann1.Y91ZV9 Arachis hypogaea HOM05D006975 ORTHO05D008736 6.3e-37 159.1 275 40.4
MD08G1011800 Malus domestica HOM05D006975 ORTHO05D008736 2.0e-35 154.1 252 41.7
vmacro07578 Vaccinium macrocarpon HOM05D006975 ORTHO05D008736 5.9e-35 152.5 428 33.2
FAN27G0483 Fragaria x ananassa HOM05D006975 ORTHO05D008736 7.7e-35 152.1 265 39.2
AUR62041899 Chenopodium quinoa HOM05D006975 ORTHO05D008736 3.3e-33 146.7 235 42.6
Pp3c5_3830 Physcomitrium patens HOM05D006975 ORTHO05D008736 1.3e-26 124.8 157 47.8
TAR628G0560 Trochodendron aralioides HOM05D006975 ORTHO05D008736 8.9e-23 112.1 138 49.3
THA.LOC104798678 Tarenaya hassleriana HOM05D006975 ORTHO05D008736 2.6e-22 110.5 359 32.0
Mapoly0138s0045 Marchantia polymorpha HOM05D006975 ORTHO05D008736 3.7e-21 106.7 163 39.3
Cfa006091 Carpinus fangiana HOM05D006789 ORTHO05D008460 6.4e-21 105.9 127 53.5
Eucgr.H00979 Eucalyptus grandis HOM05D006975 ORTHO05D008736 1.4e-20 104.8 122 54.1
CDE02G4250 Ceratophyllum demersum HOM05D000565 ORTHO05D004389 3.5e-19 100.1 134 44.0
ATR0564G524 Amborella trichopoda HOM05D006975 ORTHO05D008736 6.0e-19 99.4 317 30.6
Eucgr.F00575 Eucalyptus grandis HOM05D006975 ORTHO05D008736 2.8e-16 90.5 76 65.8
SEGI_37599 Sequoiadendron giganteum HOM05D006975 ORTHO05D008736 1.1e-15 88.6 60 71.7
TAR381G1583 Trochodendron aralioides HOM05D006975 ORTHO05D008736 8.9e-15 85.5 206 33.0
Eucgr.F00573 Eucalyptus grandis HOM05D006975 ORTHO05D008736 4.4e-14 83.2 92 55.4
SEGI_16371 Sequoiadendron giganteum HOM05D006975 ORTHO05D008736 1.1e-12 78.6 96 45.8
CBR_g44391 Chara braunii HOM05D006975 ORTHO05D008736 1.4e-12 78.2 156 35.9
Pp3c24_16390 Physcomitrium patens HOM05D003148 ORTHO05D003894 1.9e-12 77.8 108 37.0
Pp3c8_21620 Physcomitrium patens HOM05D003148 ORTHO05D003894 1.6e-11 74.7 115 37.4
Eucgr.H00986 Eucalyptus grandis HOM05D006975 ORTHO05D008736 6.6e-10 69.3 42 78.6
arahy.Tifrunner.gnm1.ann1.1D0YR0 Arachis hypogaea HOM05D006975 ORTHO05D008736 2.6e-06 57.4 60 53.3
Sabra02G0016800 Salix brachista HOM05D006975 ORTHO05D008736 7.6e-06 55.8 146 34.2


User provided reference genes

Program Settings